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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR416 IGR413 IGR415 IGR417 SMu0477 SMu0474 SMu0468 SMu0470 SMu0473 SMu0471 SMu0475 SMu0477 SMu0474 SMu0468 SMu0470 SMu0473 SMu0471 SMu0475 SMu0477 SMu0474 SMu0470 SMu0473 SMu0471 SMu0475 kdtB,coaD, - SMu0469 SMu0472 SMu0476 SMu0472 SMu0476 SMu0468 kdtB,coaD, - SMu0469


LANL Gene ID: SMu0474

GenBank Locus Tag: SMU.523

DNA Molecule Name:
1  

GenBank ID:
24379005

Gene Name:


Definition:
conserved hypothetical protein, VanZ-like family

Cellular Location:
Membrane, Cytoplasm [Evidence]

Gene Start:
489714

Gene Stop:
490250

Gene Length:
537

Molecular Weight*:
20671

pI*:
9.40

Net Charge*:
7.66

EC:
 

Functional Class:
Unknown  

Gene Ontology:

Pathway: pathway table

Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Limited hits in gapped BLAST to S.pneumoniae sequences. Residues 27-166 are 45% similar to gi15900663; residues 23-166 are 43% similar to gi15902721.





The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG0459 (5e-33).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24379005|ref|NP_720960.1|  hypothetical protein SMU.523 [...   323   2e-87
 gi|77408381|ref|ZP_00785121.1|  VanZF domain protein [Strept...   162   1e-38
 gi|25010576|ref|NP_734971.1|  hypothetical protein gbs0506 [...   160   4e-38
 gi|148989850|ref|ZP_01821144.1|  VanZF-related protein [Stre...   160   4e-38
 gi|149007649|ref|ZP_01831266.1|  VanZF-related protein [Stre...   159   5e-38
 gi|76787256|ref|YP_329192.1|  VanZ family protein [Streptoco...   159   5e-38
 gi|22536638|ref|NP_687489.1|  VanZF domain protein [Streptoc...   159   7e-38
 gi|148985882|ref|ZP_01818976.1|  VanZF-related protein [Stre...   159   1e-37
 gi|149003388|ref|ZP_01828277.1|  VanZF-related protein [Stre...   157   3e-37
 gi|15900663|ref|NP_345267.1|  VanZF-related protein [Strepto...   156   4e-37


InterPro Summary:  InterProScan

InterPro
IPR006976
Family
VanZ like protein
PF04892 [17-167]T 1.89999859865843E-24 PF04892 VanZ VanZ


COGS Summary:  COGS Search
No hits to the COGs database.
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hits to the ProDom database.

Paralogs:  Local Blast Search
SMu0474 has no significant similarity (blastp p-value < 1e-3) to any other gene in this genome.


Pfam Summary:  Pfam Search
Residues 17 to 167 (E-value = 1.7e-27) place SMu0474 in the VanZ family which is described as VanZ like family (PF04892)

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable  
1  
31
transmembrane  
20  
36
transmembrane  
85  
101
transmembrane  
111  
127

Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MTAFFDETAELKPIGRKLSWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQ
HFGRLVILPVPFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLL
LFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFEIDDLWTNSLG
GLLAFYCHLFIQKKIRAYYQQKSQSGKA

Gene Nucleotide Sequence:  Sequence Viewer
ATGACTGCTTTTTTTGATGAAACAGCTGAGTTAAAACCAATCGGCCGCAA
GTTATCTTGGCTTTTGCTGGTTTTATATTTTATCGCTATTTGCTATATGT
GTTTTTGTCCTCAGCATACAATAAGGGGTGTTCAAACCCCGAACATTCAG
CATTTTGGTCGGCTTGTTATACTGCCTGTGCCTTTCAATTCACTATTTAG
TTTAGGGCACTTGTCCAATCTTTTGAAACTTATCTGGGTGTTTGGTCAAA
ATGTTGTTAATATCTTTTTGCTTTTTCCCTTGGTTTTGCAAGTTCTGTTA
CTCTTTCCAAACTTGAGAAATAAGAAAAAAATCTTGTTATTTAGTTTTTG
TCTAAGTCTAAGTATTGAATGCACACAACTGCTTCTTGATTTCTTTTTTG
ATGTTAATCGTGTTTTTGAAATTGATGATTTATGGACCAATAGTTTAGGT
GGTTTATTAGCCTTTTATTGTCACCTTTTTATTCAAAAGAAAATAAGAGC
ATATTATCAACAGAAATCTCAAAGTGGTAAGGCTTGA

Los Alamos National Laboratory • Est 1943

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