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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap tRNA-Ser-5 IGR333 IGR335 IGR338 IGR339 IGR337 IGR334 IGR340 IGR336 IGR342 IGR341 SMu0384 SMu0381 rbfA, - SMu0383 copY, - SMu0385 SMu0378 trmB, - SMu0377 SMu0374 SMu0376 SMu0375 nusA, - SMu0379 infB, - SMu0382 SMu0384 SMu0381 rbfA, - SMu0383 copY, - SMu0385 SMu0378 trmB, - SMu0377 SMu0374 SMu0376 SMu0375 nusA, - SMu0379 infB, - SMu0382 Type: tandem, Name: SMu-TR-6 - 6 SMu0384 rbfA, - SMu0383 copY, - SMu0385 SMu0378 trmB, - SMu0377 SMu0376 SMu0375 nusA, - SMu0379 infB, - SMu0382 SMu0380 SMu0381 SMu0374 SMu0380


LANL Gene ID: SMu0381

GenBank Locus Tag: SMU.420

DNA Molecule Name:
1  

GenBank ID:
24378913

Gene Name:


Definition:
ribosomal protein L7A family

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
392389

Gene Stop:
392691

Gene Length:
303

Molecular Weight*:
10916

pI*:
10.80

Net Charge*:
6.98

EC:
 

Functional Class:
Protein synthesis; Ribosomal proteins: synthesis and modification  

Gene Ontology:

Pathway: pathway table

Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Matches in gapped BLAST to ribosomal proteins, some said to be of the L7a family. Residues 12-100 are 73% similar to >gi15900467 from S.pneumoniae and are 76% similar to gi15675572 from S.pyogenes.





The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG0380 (4e-33).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24378913|ref|NP_720868.1|  hypothetical protein SMU.420 [...   164   1e-39
 gi|55820436|ref|YP_138878.1|  hypothetical protein stu0343 [...   141   1e-32
 gi|15900467|ref|NP_345071.1|  hypothetical protein SP_0555 [...   134   1e-30
 gi|149005665|ref|ZP_01829404.1|  hypothetical protein CGSSp1...   133   4e-30
 gi|15902524|ref|NP_358074.1|  hypothetical protein spr0480 [...   132   7e-30
 gi|22536563|ref|NP_687414.1|  hypothetical protein SAG0380 [...   129   4e-29
 gi|19746624|ref|NP_607760.1|  hypothetical protein spyM18_17...   129   7e-29
 gi|71904115|ref|YP_280918.1|  hypothetical protein M28_Spy14...   128   1e-28
 gi|15675572|ref|NP_269746.1|  hypothetical protein SPy_1722 ...   128   1e-28
 gi|157075295|gb|ABV09978.1|  ribosomal protein L7A family [S...   126   4e-28


InterPro Summary:  InterProScan

InterPro
IPR004038
Family
Ribosomal protein L7Ae/L30e/S12e/Gadd45
PD004495 [16-76]T 0.003 PD004495 RXL7_BACST_Q9EV99; RXL7_BACST_Q9EV99;
PF01248 [5-96]T 1.3e-17 PF01248 Ribosomal_L7Ae Ribosomal_L7Ae


COGS Summary:  COGS Search
BeTs to 3 clades of COG1358
COG name: Ribosomal protein HS6-type (S12/L30/L7a)
Functional Class: J
The phylogenetic pattern of COG1358 is amtkY-v--B-----------
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hits to the ProDom database.

Paralogs:  Local Blast Search
SMu0381 has no significant similarity (blastp p-value < 1e-3) to any other gene in this genome.


Pfam Summary:  Pfam Search
Residues 5 to 96 (E-value = 2.5e-15) place SMu0381 in the Ribosomal_L7Ae family which is described as Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (PF01248)

 Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MNNSKKLSNLLGLAQRAGRVISGEELVVKAIQTGQAQLIFLAKDAGSNLT
KKVTDKSNYYNIEVSTVFSALELSIAIGRNRKVLAIVDTGFSKKMRTFME


Gene Nucleotide Sequence:  Sequence Viewer
TTGAATAATTCAAAAAAGTTATCAAACTTATTAGGTTTGGCCCAGAGAGC
AGGACGTGTTATTTCAGGTGAAGAATTAGTTGTTAAAGCTATTCAAACTG
GACAGGCACAGCTCATCTTTTTAGCCAAAGATGCTGGTTCTAATCTAACT
AAAAAAGTAACGGATAAAAGTAACTATTATAATATAGAAGTCTCCACAGT
GTTTTCAGCACTGGAATTAAGTATCGCTATTGGCAGAAACAGAAAAGTTC
TTGCTATTGTGGATACTGGATTTTCAAAGAAAATGAGGACCTTTATGGAA
TAA

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