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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap tRNA-Leu-5 tRNA-Ser-4 IGR286 IGR285 IGR283 IGR289 IGR287 IGR290 IGR288 IGR291 IGR284 SMu0315 rpsL,str, - SMu0322 rpsG, - SMu0323 rpe, - SMu0317 purR,xpt, - SMu0321 SMu0316 ksgA, - SMu0314 SMu0319 fus,EFG,tetO, - SMu0324 SMu0315 rpsL,str, - SMu0322 rpsG, - SMu0323 rpe, - SMu0317 purR,xpt, - SMu0321 SMu0316 ksgA, - SMu0314 SMu0319 fus,EFG,tetO, - SMu0324 rpsL,str, - SMu0322 rpsG, - SMu0323 rpe, - SMu0317 purR,xpt, - SMu0321 SMu0316 ksgA, - SMu0314 SMu0319 fus,EFG,tetO, - SMu0324 SMu0318 yhaM,cbf1, - SMu0320 SMu0318 yhaM,cbf1, - SMu0320 SMu0315


LANL Gene ID: SMu0320

GenBank Locus Tag: SMU.355

DNA Molecule Name:
1  

GenBank ID:
24378852

Gene Name:
yhaM  cbf1  

Definition:
CMP-binding factor 1

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
331984

Gene Stop:
332952

Gene Length:
969

Molecular Weight*:
37081

pI*:
5.50

Net Charge*:
-9.32

EC:
 

Functional Class:
Unassigned  

Gene Ontology:
Molecular function
  GO:0003676    nucleic acid binding
  GO:0003824    catalytic activity


Pathway: pathway table

Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Matches in gapped BLAST to CMP-binding factors. Residues 1-310 are 87% similar to gi15674447, the predicted factor from S.pyogenes and 78% similar to the protein from S.pneumoniae (gi15903836).





The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG1773 (1e-161).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24378852|ref|NP_720807.1|  putative CMP-binding factor [S...   640   0.0  
 gi|21909731|ref|NP_663999.1|  putative CMP-binding factor [S...   560   e-158
 gi|139473085|ref|YP_001127800.1|  putative 3'-5' exoribonucl...   559   e-158
 gi|15674447|ref|NP_268621.1|  putative CMP-binding factor [S...   559   e-158
 gi|19745399|ref|NP_606535.1|  putative CMP-binding factor [S...   556   e-157
 gi|50913605|ref|YP_059577.1|  CMP-binding factor [Streptococ...   556   e-157
 gi|22537912|ref|NP_688763.1|  HD domain protein [Streptococc...   552   e-156
 gi|76787767|ref|YP_330392.1|  HD domain protein [Streptococc...   551   e-155
 gi|25011855|ref|NP_736250.1|  hypothetical protein gbs1816 [...   550   e-155
 gi|116628482|ref|YP_821101.1|  Predicted HD-superfamily hydr...   547   e-154


InterPro Summary:  InterProScan

InterPro
IPR003607
Domain
Metal-dependent phosphohydrolase, HD region
SM00471 [154-288]T 0.4 SM00471 HDc HDc
InterPro
IPR004365
Domain
Nucleic acid binding, OB-fold, tRNA/helicase-type
PF01336 [16-86]T 100.0 PF01336 tRNA_anti tRNA_anti
InterPro
IPR006674
Domain
Metal-dependent phosphohydrolase, HD region, subdomain
PF01966 [158-279]T 0.0399999971482335 PF01966 HD HD
noIPR
unintegrated
unintegrated
SSF52141 [111-183]T 0.019000000000000003 SSF52141 UDNA_glycsylseSF UDNA_glycsylseSF


COGS Summary:  COGS Search
No hits to the COGs database.
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 144-280 are 63% similar to a (COMPLETE PROTEOME CMP-BINDING) protein domain (PD017443 which is seen in Q9CEC1_LACLA.

Residues 10-105 are 62% similar to a (PROTEOME COMPLETE CMP-BINDING) protein domain (PD038968 which is seen in Q9CEC1_LACLA.


Paralogs:  Local Blast Search
SMu0320 has no significant similarity (blastp p-value < 1e-3) to any other gene in this genome.


Pfam Summary:  Pfam Search
Residues 158 to 279 (E-value = 4.7e-05) place SMu0320 in the HD family which is described as HD domain (PF01966)

 Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MKINQMKKDELFEGFYLIKSAELRKTRAGKDYLAFTFQDDSGEISGNLWD
AQPYNVEEFTAGKVVFMRGRREVYNGTPQVNQISLRHPKDGEPNDPRDFK
EKPPVDVEEVKDYLEQMLFKIENATWQRIVRALYRKYSKEFFSFPAAKTN
HHAFEVGLAYHTATMVRLADSIGDIYEELDKSLLFAGIMLHDLAKVLELS
GPDNTEYTIRGNLIGHIALIDEEITKVLSELSIDDTKEDVIVLRHVILSH
HGLLEYGSPVRPKIMEAEIIHMIDNIDAEMMMMTTALSRVSEGEMTGRIF
AMDNRSFYKPKTNHQNTKKDDY

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAAATTAATCAAATGAAAAAAGATGAACTTTTCGAGGGATTTTATCT
CATTAAATCAGCAGAGCTCAGAAAAACAAGAGCAGGAAAAGATTACCTTG
CCTTTACCTTTCAAGATGATAGTGGAGAAATTTCTGGTAATCTTTGGGAT
GCTCAGCCTTATAATGTTGAAGAATTTACTGCTGGGAAAGTTGTCTTTAT
GAGGGGACGCCGTGAAGTTTATAATGGGACACCACAAGTCAATCAAATCA
GCTTACGGCATCCTAAGGATGGAGAGCCTAATGATCCTAGAGATTTTAAA
GAAAAACCGCCTGTTGATGTTGAAGAGGTCAAAGATTATCTTGAACAGAT
GCTCTTCAAAATCGAAAATGCTACCTGGCAGCGGATTGTCCGTGCCCTTT
ATCGTAAGTATAGTAAAGAATTTTTCAGCTTTCCGGCAGCTAAAACAAAT
CACCATGCTTTTGAAGTTGGTCTGGCCTATCATACAGCAACTATGGTTCG
TTTGGCTGATAGTATCGGGGATATTTATGAAGAACTTGACAAAAGTCTTC
TGTTTGCGGGTATCATGCTGCATGATTTAGCCAAAGTTCTTGAGCTATCT
GGTCCTGATAATACCGAATATACTATTCGTGGCAATCTTATTGGTCATAT
TGCTTTGATCGATGAAGAAATTACTAAAGTTTTATCAGAATTGTCTATTG
ATGATACTAAGGAAGATGTTATTGTCTTGCGCCATGTTATTCTCAGCCAT
CATGGTCTCTTAGAATATGGCAGTCCCGTTAGACCTAAAATTATGGAAGC
AGAAATCATTCATATGATTGATAATATTGATGCTGAAATGATGATGATGA
CGACTGCTCTATCTCGTGTATCAGAAGGAGAGATGACTGGTCGTATCTTT
GCTATGGATAATCGTTCTTTCTATAAACCTAAAACAAACCATCAAAACAC
GAAAAAAGATGACTATTAG

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