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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR207 IGR206 IGR205 IGR209 IGR210 IGR203 IGR204 IGR208 SMu0237 dacA, - SMu0230 SMu0236 SMu0229 oppB, - SMu0232 oppC, - SMu0233 oppD,amiE, - SMu0234 oppA, - SMu0231 SMu0237 dacA, - SMu0230 SMu0236 SMu0229 oppB, - SMu0232 oppC, - SMu0233 oppD,amiE, - SMu0234 oppA, - SMu0231 SMu0237 dacA, - SMu0230 SMu0236 SMu0229 oppB, - SMu0232 oppC, - SMu0233 oppD,amiE, - SMu0234 oppA, - SMu0231 oppF, - SMu0235 oppF, - SMu0235


LANL Gene ID: SMu0233

GenBank Locus Tag: SMU.257

DNA Molecule Name:
1  

GenBank ID:
24378765

Gene Name:
oppC  

Definition:
oligopeptide ABC transporter, permease

Cellular Location:
Membrane, Cytoplasm, Extracellular [Evidence]

Gene Start:
246502

Gene Stop:
247533

Gene Length:
1032

Molecular Weight*:
36907

pI*:
9.90

Net Charge*:
5.19

EC:
 

Functional Class:
Transport and binding proteins; ABC Superfamily: membrane spanning permease  

Gene Ontology:
Biological process
  GO:0006810    transport

Cellular component
  GO:0016020    membrane

Molecular function
  GO:0005215    transporter activity


Pathway: pathway table

Comment:
For other components see SMu0235 (NBD1); SMu0234 (NBD2); SMu0232 (MSD2) and SMu0231 (SBP1).

For other 'opp' genes see SMu0231 (oppA); SMu0232 (oppB); SMu0234 (oppD) and SMu0235 (oppF).



View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Several matches in gapped BLAST to transmembrane protein, permeases. Residues 1-343 are 54% similar to 15672328 from L.lactis lactis. Residues 20-339 are 42% similar to 16801362 from L.inocua.





The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG0150 (1e-133).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24378765|ref|NP_720720.1|  putative transmembrane protein...   599   e-170
 gi|76799440|ref|ZP_00781587.1|  oligopeptide ABC trasporter ...   491   e-137
 gi|22536335|ref|NP_687186.1|  oligopeptide ABC transporter, ...   489   e-136
 gi|77409727|ref|ZP_00786388.1|  oligopeptide ABC transporter...   488   e-136
 gi|116619003|ref|YP_819374.1|  ABC-type dipeptide/oligopepti...   452   e-125
 gi|15672328|ref|NP_266502.1|  oligopeptide ABC trasporter pe...   390   e-107
 gi|125623234|ref|YP_001031717.1|  dipeptide transport system...   388   e-106
 gi|116511205|ref|YP_808421.1|  ABC-type dipeptide/oligopepti...   388   e-106
 gi|116490885|ref|YP_810429.1|  ABC-type dipeptide/oligopepti...   377   e-103
 gi|118586253|ref|ZP_01543711.1|  ABC-type oligopeptide trans...   376   e-103


InterPro Summary:  InterProScan

InterPro
IPR000515
Family
Binding-protein-dependent transport systems inner membrane component
PF00528 [140-342]T 1.10000150671643E-41 PF00528 BPD_transp_1 BPD_transp_1
PS50928 [140-329]T 0.0 PS50928 ABC_TM1 ABC_TM1


COGS Summary:  COGS Search
BeTs to 11 clades of COG1173
COG name: Dipeptide/oligopeptide/nickel ABC-type transport systems, permease components
Functional Class: E,P
The phylogenetic pattern of COG1173 is a-TK-qVCEBRHUj--o-IN-
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 220-339 are 72% similar to a (PERMEASE TRANSPORT COMPLETE PROTEOME TRANSPORTER ABC) protein domain (PD000562 which is seen in Q9CIL0_LACLA.

Residues 144-194 are 50% similar to a (PERMEASE TRANSPORT PROTEOME COMPLETE) protein domain (PD411907 which is seen in Q9CIL0_LACLA.

Residues 227-339 are 34% similar to a (TRANSPORT PERMEASE COMPLETE PROTEOME) protein domain (PD151974 which is seen in Q54909_STRPY.

Residues 75-143 are 49% similar to a (PROTEOME OLIGOPEPTIDE COMPLETE TRASPORTER) protein domain (PD388342 which is seen in Q9CIL0_LACLA.

Residues 20-73 are 55% similar to a (TRANSPORT PERMEASE OLIGOPEPTIDE) protein domain (PD374964 which is seen in Q9CIL0_LACLA.

Residues 34-173 are 24% similar to a (PROTEOME COMPLETE PEPTIDE ABC) protein domain (PD274867 which is seen in Q9KUA5_VIBCH.

Residues 116-334 are 22% similar to a (SYSTEM MEMBRANE INTEGRAL TRANSPORT) protein domain (PD294488 which is seen in Q9EWP8_STRCO.


Paralogs:  Local Blast Search
SMu0233 is paralogously related (blast p-value < 1e-3) to SMu0732, a predicted glutamine transport permease.


Pfam Summary:  Pfam Search
Residues 140 to 342 (E-value = 1e-44) place SMu0233 in the BPD_transp_1 family which is described as Binding-protein-dependent transport system inner membrane component (PF00528)

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
43  
59
transmembrane  
144  
160
transmembrane  
190  
206
transmembrane  
257  
273
transmembrane  
311  
327

Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MADKNREFVLIGAGSTKAQEKIEKPALSFLQDAWRQLKKNKLAVVSLWFL
TLLISFSLVSPLFVSQKDANSFDSDKVSTYSNLPPNSGLGIPGWNGVFQM
PGSSKASNVYEDQAVPKGKTFLLGTDSLGRSLGKRIIVGVRISLLVAVAA
TCIDLLIGVVYGLTSGYVGGAVDIIMQRIIEIISSVPNLIIVTMLGLLLG
NGIIAIILSIALTGWTSMARQVRNMTLSYKERDFVLAARTLGESSPKIAF
KHILPNISGVIIVQIMMTIPSAIMYEAILSAINLGVKPPTSSLGSLISDA
QENLQYYPYQIILPALALVFISLAFILLGDGLRDAFDPKSGQD

Gene Nucleotide Sequence:  Sequence Viewer
ATGGCAGATAAAAATAGAGAGTTTGTGCTCATTGGGGCAGGAAGTACCAA
AGCACAAGAAAAAATTGAAAAGCCGGCTCTATCTTTCTTACAAGATGCTT
GGCGACAGTTAAAGAAAAATAAGTTAGCAGTTGTTTCACTTTGGTTTTTA
ACCTTATTAATCTCTTTTTCTTTGGTATCTCCTTTGTTTGTATCACAAAA
AGATGCTAATAGTTTTGATTCGGACAAGGTATCAACTTATAGTAATTTGC
CGCCTAATAGCGGTCTTGGTATTCCGGGTTGGAATGGTGTTTTTCAGATG
CCAGGCTCTAGCAAGGCATCCAATGTCTATGAAGATCAAGCCGTTCCAAA
AGGGAAAACATTCCTTTTGGGAACCGATAGTTTGGGACGCAGTCTAGGTA
AGCGGATTATTGTTGGTGTTCGTATTTCGCTTTTAGTAGCAGTCGCTGCT
ACCTGCATTGACTTGCTTATTGGAGTTGTTTATGGTCTGACTTCGGGCTA
TGTTGGCGGTGCTGTTGATATCATTATGCAGCGGATTATTGAAATTATTT
CTTCTGTTCCAAATCTAATTATCGTAACCATGTTAGGGCTTTTATTAGGG
AATGGGATTATTGCAATTATCTTGTCCATTGCTTTAACGGGTTGGACTTC
AATGGCAAGGCAGGTTCGAAACATGACCTTATCATATAAGGAAAGGGATT
TTGTTTTAGCTGCCAGAACTTTAGGTGAAAGCAGTCCTAAAATTGCTTTT
AAACATATTTTACCCAATATTTCTGGTGTTATTATTGTGCAAATTATGAT
GACGATTCCTTCTGCCATTATGTATGAAGCTATTCTTTCAGCTATCAATT
TAGGAGTAAAACCACCAACGTCTTCTTTGGGTTCTCTTATTTCTGATGCT
CAAGAAAATTTACAATATTACCCTTATCAAATCATCTTACCGGCTCTTGC
TTTAGTCTTTATTTCTTTAGCATTTATTTTACTTGGAGATGGTTTACGTG
ATGCATTTGATCCAAAATCAGGACAAGACTAG

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