| | Editorial Nucleic Acids Res. 2007 January; 35(Database issue): D1–D2. Published online 2007 January. doi: 10.1093/nar/gkl1051.PMCID: PMC1899101 Articles GlycoMapsDB: a database of the accessible conformational space of glycosidic linkages M. Frank, T. Lütteke, and C.-W. von der Lieth PMCID: PMC1899098 The Molecular Biology Database Collection: 2007 update Michael Y. Galperin PMCID: PMC1761423 Database resources of the National Center for Biotechnology Information David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, and Eugene Yaschenko PMCID: PMC1781113 DDBJ working on evaluation and classification of bacterial genes in INSDC Hideaki Sugawara, Takashi Abe, Takashi Gojobori, and Yoshio Tateno PMCID: PMC1669713 EMBL Nucleotide Sequence Database in 2006 Tamara Kulikova, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Lawrence Bower, Paul Browne, Matias Castro, Guy Cochrane, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, Gemma Hoad, Carola Kanz, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Sheila Plaister, Siamak Sobhany, Peter Stoehr, Robert Vaughan, Dan Wu, Weimin Zhu, and Rolf Apweiler PMCID: PMC1897316 GenBank Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, and David L. Wheeler PMCID: PMC1781245 Entrez Gene: gene-centered information at NCBI Donna Maglott, Jim Ostell, Kim D. Pruitt, and Tatiana Tatusova PMCID: PMC1761442 Developments in CORG: a gene-centric comparative genomics resource C. Dieterich, M. W. Franz, and M. Vingron PMCID: PMC1751536 InSatDb: a microsatellite database of fully sequenced insect genomes Sunil Archak, Eshwar Meduri, P. Sravana Kumar, and J. Nagaraju PMCID: PMC1634736 OriDB: a DNA replication origin database Conrad A. Nieduszynski, Shin-ichiro Hiraga, Prashanth Ak, Craig J. Benham, and Anne D. Donaldson PMCID: PMC1781122 Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications Byungwook Lee, Taehyung Kim, Seon-Kyu Kim, Kwang H. Lee, and Doheon Lee PMCID: PMC1781150 PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits Lei Bao, Mi Zhou, Ligang Wu, Lu Lu, Dan Goldowitz, Robert W. Williams, and Yan Cui PMCID: PMC1669716 Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation John E. Karro, Yangpan Yan, Deyou Zheng, Zhaolei Zhang, Nicholas Carriero, Philip Cayting, Paul Harrrison, and Mark Gerstein PMCID: PMC1669708 NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins Kim D. Pruitt, Tatiana Tatusova, and Donna R. Maglott PMCID: PMC1716718 RetrOryza: a database of the rice LTR-retrotransposons Cristian Chaparro, Romain Guyot, Andrea Zuccolo, Benoît Piégu, and Olivier Panaud PMCID: PMC1635335 SNPSTR: a database of compound microsatellite-SNP markers I. Agrafioti and M. P. H. Stumpf PMCID: PMC1899107 SGDB: a database of synthetic genes re-designed for optimizing protein over-expression Gang Wu, Yuanpu Zheng, Imran Qureshi, Htar Thant Zin, Tyler Beck, Blazej Bulka, and Stephen J. Freeland PMCID: PMC1781117 TRDB—The Tandem Repeats Database Yevgeniy Gelfand, Alfredo Rodriguez, and Gary Benson PMCID: PMC1781109 VISTA Enhancer Browser—a database of tissue-specific human enhancers Axel Visel, Simon Minovitsky, Inna Dubchak, and Len A. Pennacchio PMCID: PMC1716724 The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species Namshin Kim, Alexander V. Alekseyenko, Meenakshi Roy, and Christopher Lee PMCID: PMC1669709 ECgene: an alternative splicing database update Yeunsook Lee, Younghee Lee, Bumjin Kim, Youngah Shin, Seungyoon Nam, Pora Kim, Namshin Kim, Won-Hyong Chung, Jaesang Kim, and Sanghyuk Lee PMCID: PMC1716719 H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational Jun-ichi Takeda, Yutaka Suzuki, Mitsuteru Nakao, Tsuyoshi Kuroda, Sumio Sugano, Takashi Gojobori, and Tadashi Imanishi PMCID: PMC1716722 U12DB: a database of orthologous U12-type spliceosomal introns Tyler S. Alioto PMCID: PMC1635337 GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs Anil G. Jegga, Jing Chen, Sivakumar Gowrisankar, Mrunal A. Deshmukh, RangaChandra Gudivada, Sue Kong, Vivek Kaimal, and Bruce J. Aronow PMCID: PMC1781107 PReMod: a database of genome-wide mammalian cis-regulatory module predictions Vincent Ferretti, Christian Poitras, Dominique Bergeron, Benoit Coulombe, François Robert, and Mathieu Blanchette PMCID: PMC1761432 SwissRegulon: a database of genome-wide annotations of regulatory sites Mikhail Pachkov, Ionas Erb, Nacho Molina, and Erik van Nimwegen PMCID: PMC1716717 Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes Abel González Pérez, Vladimir Espinosa Angarica, Ana Tereza R. Vasconcelos, and Julio Collado-Vides PMCID: PMC1669740 TRED: a transcriptional regulatory element database, new entries and other development C. Jiang, Z. Xuan, F. Zhao, and M. Q. Zhang PMCID: PMC1899102 dbRES: a web-oriented database for annotated RNA editing sites Tao He, Pufeng Du, and Yanda Li PMCID: PMC1781157 fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences Taishin Kin, Kouichirou Yamada, Goro Terai, Hiroaki Okida, Yasuhiko Yoshinari, Yukiteru Ono, Aya Kojima, Yuki Kimura, Takashi Komori, and Kiyoshi Asai PMCID: PMC1669753 miRGen: a database for the study of animal microRNA genomic organization and function Molly Megraw, Praveen Sethupathy, Benoit Corda, and Artemis G. Hatzigeorgiou PMCID: PMC1669779 NATsDB: Natural Antisense Transcripts DataBase Yong Zhang, Jiongtang Li, Lei Kong, Ge Gao, Qing-Rong Liu, and Liping Wei PMCID: PMC1635336 Noncoding RNAs database (ncRNAdb) Maciej Szymanski, Volker A. Erdmann, and Jan Barciszewski PMCID: PMC1781251 PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes Ju Youn Lee, Ijen Yeh, Ji Yeon Park, and Bin Tian PMCID: PMC1899096 The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data J. R. Cole, B. Chai, R. J. Farris, Q. Wang, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, A. M. Bandela, E. Cardenas, G. M. Garrity, and J. M. Tiedje PMCID: PMC1669760 REDIdb: the RNA editing database Ernesto Picardi, Teresa Maria Rosaria Regina, Axel Brennicke, and Carla Quagliariello PMCID: PMC1781140 RNAdb 2.0—an expanded database of mammalian non-coding RNAs Ken C. Pang, Stuart Stephen, Marcel E. Dinger, Pär G. Engström, Boris Lenhard, and John S. Mattick PMCID: PMC1751534 Sno/scaRNAbase: a curated database for small nucleolar RNAs and cajal body-specific RNAs Jun Xie, Ming Zhang, Tao Zhou, Xia Hua, LiSha Tang, and Weilin Wu PMCID: PMC1669756 TassDB: a database of alternative tandem splice sites Michael Hiller, Swetlana Nikolajewa, Klaus Huse, Karol Szafranski, Philip Rosenstiel, Stefan Schuster, Rolf Backofen, and Matthias Platzer PMCID: PMC1669710 The Universal Protein Resource (UniProt) The UniProt Consortium PMCID: PMC1669721 BindingDB: a web-accessible database of experimentally determined protein–ligand binding affinities Tiqing Liu, Yuhmei Lin, Xin Wen, Robert N. Jorissen, and Michael K. Gilson PMCID: PMC1751547 PIDD: database for Protein Inter-atomic Distance Distributions Di Wu, Feng Cui, Robert Jernigan, and Zhijun Wu PMCID: PMC1781147 eSLDB: eukaryotic subcellular localization database Andea Pierleoni, Pier Luigi Martelli, Piero Fariselli, and Rita Casadio PMCID: PMC1669738 SUBA: the Arabidopsis Subcellular Database Joshua L. Heazlewood, Robert E. Verboom, Julian Tonti-Filippini, Ian Small, and A. Harvey Millar PMCID: PMC1635339 FireDB—a database of functionally important residues from proteins of known structure Gonzalo Lopez, A. Valencia, and M. Tress PMCID: PMC1716728 New developments in the InterPro database Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert Finn, Wolfgang Fleischmann, Julian Gough, Daniel Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra Orchard, Christine Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, and Corin Yeats PMCID: PMC1899100 Phospho3D: a database of three-dimensional structures of protein phosphorylation sites Andreas Zanzoni, Gabriele Ausiello, Allegra Via, Pier Federico Gherardini, and Manuela Helmer-Citterich PMCID: PMC1669737 A Protein Classification Benchmark collection for machine learning Paolo Sonego, Mircea Pacurar, Somdutta Dhir, Attila Kertész-Farkas, András Kocsor, Zoltán Gáspári, Jack A.M. Leunissen, and Sándor Pongor PMCID: PMC1669728 CDD: a conserved domain database for interactive domain family analysis Aron Marchler-Bauer, John B. Anderson, Myra K. Derbyshire, Carol DeWeese-Scott, Noreen R. Gonzales, Marc Gwadz, Luning Hao, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Dmitri Krylov, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, and Stephen H. Bryant PMCID: PMC1751546 EVEREST: a collection of evolutionary conserved protein domains Elon Portugaly, Nathan Linial, and Michal Linial PMCID: PMC1669739 PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways Huaiyu Mi, Nan Guo, Anish Kejariwal, and Paul D. Thomas PMCID: PMC1716723 SISYPHUS—structural alignments for proteins with non-trivial relationships Antonina Andreeva, Andreas Prlić, Tim J. P. Hubbard, and Alexey G. Murzin PMCID: PMC1635320 TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes Jeremy D. Selengut, Daniel H. Haft, Tanja Davidsen, Anurhada Ganapathy, Michelle Gwinn-Giglio, William C. Nelson, Alexander R. Richter, and Owen White PMCID: PMC1781115 Defensins knowledgebase: a manually curated database and information source focused on the defensins family of antimicrobial peptides Shalin Seebah, Anita Suresh, Shaowei Zhuo, Yong How Choong, Hazel Chua, Danny Chuon, Roger Beuerman, and Chandra Verma PMCID: PMC1669742 REBASE—enzymes and genes for DNA restriction and modification Richard J. Roberts, Tamas Vincze, Janos Posfai, and Dana Macelis PMCID: PMC1899104 Sentra: a database of signal transduction proteins for comparative genome analysis Mark D'Souza, Elizabeth M. Glass, Mustafa H. Syed, Yi Zhang, Alexis Rodriguez, Natalia Maltsev, and Michael Y. Galperin PMCID: PMC1751548 TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels Qinghu Ren, Kaixi Chen, and Ian T. Paulsen PMCID: PMC1747178 Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de Philip Toukach, Hiren J Joshi, René Ranzinger, Yuri Knirel, and Claus-W. von der Lieth PMCID: PMC1899093 The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution Lesley H. Greene, Tony E. Lewis, Sarah Addou, Alison Cuff, Tim Dallman, Mark Dibley, Oliver Redfern, Frances Pearl, Rekha Nambudiry, Adam Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, and Christine A. Orengo PMCID: PMC1751535 MMDB: annotating protein sequences with Entrez's 3D-structure database Yanli Wang, Kenneth J. Addess, Jie Chen, Lewis Y. Geer, Jane He, Siqian He, Shennan Lu, Thomas Madej, Aron Marchler-Bauer, Paul A. Thiessen, Naigong Zhang, and Stephen H. Bryant PMCID: PMC1751549 The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data Helen Berman, Kim Henrick, Haruki Nakamura, and John L. Markley PMCID: PMC1669775 Protein Folding Database (PFD 2.0): an online environment for the International Foldeomics Consortium Kate F. Fulton, Mark A. Bate, Noel G. Faux, Khalid Mahmood, Chris Betts, and Ashley M. Buckle PMCID: PMC1781104 The SUPERFAMILY database in 2007: families and functions Derek Wilson, Martin Madera, Christine Vogel, Cyrus Chothia, and Julian Gough PMCID: PMC1669749 TMBETA-GENOME: database for annotated β-barrel membrane proteins in genomic sequences M. Michael Gromiha, Yukimitsu Yabuki, Srinesh Kundu, Sivasundaram Suharnan, and Makiko Suwa PMCID: PMC1669718 TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method Chesley M. Leslin, Alexej Abyzov, and Valentin A. Ilyin PMCID: PMC1635338 GO PaD: the Gene Ontology Partition Database Gil Alterovitz, Michael Xiang, Mamta Mohan, and Marco F. Ramoni PMCID: PMC1669720 GeneTrees: a phylogenomics resource for prokaryotes Yuying Tian and Allan W. Dickerman PMCID: PMC1761433 Eukaryotic genome size databases T. Ryan Gregory, James A. Nicol, Heidi Tamm, Bellis Kullman, Kaur Kullman, Ilia J. Leitch, Brian G. Murray, Donald F. Kapraun, Johann Greilhuber, and Michael D. Bennett PMCID: PMC1669731 Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes Masaki Hirahata, Takashi Abe, Naoto Tanaka, Yoshikazu Kuwana, Yasumasa Shigemoto, Satoru Miyazaki, Yoshiyuki Suzuki, and Hideaki Sugawara PMCID: PMC1781101 MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups Ikuo Uchiyama PMCID: PMC1751538 The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation Leslie Klis McNeil, Claudia Reich, Ramy K. Aziz, Daniela Bartels, Matthew Cohoon, Terry Disz, Robert A. Edwards, Svetlana Gerdes, Kaitlyn Hwang, Michael Kubal, Gohar Rem Margaryan, Folker Meyer, William Mihalo, Gary J. Olsen, Robert Olson, Andrei Osterman, Daniel Paarmann, Tobias Paczian, Bruce Parrello, Gordon D. Pusch, Dmitry A. Rodionov, Xinghua Shi, Olga Vassieva, Veronika Vonstein, Olga Zagnitko, Fangfang Xia, Jenifer Zinner, Ross Overbeek, and Rick Stevens PMCID: PMC1751540 PEDANT genome database: 10 years online M. Louise Riley, Thorsten Schmidt, Irena I. Artamonova, Christian Wagner, Andreas Volz, Klaus Heumann, Hans-Werner Mewes, and Dmitrij Frishman PMCID: PMC1761421 STRING 7—recent developments in the integration and prediction of protein interactions Christian von Mering, Lars J. Jensen, Michael Kuhn, Samuel Chaffron, Tobias Doerks, Beate Krüger, Berend Snel, and Peer Bork PMCID: PMC1669762 euHCVdb: the European hepatitis C virus database Christophe Combet, Nicolas Garnier, Céline Charavay, Delphine Grando, Daniel Crisan, Julien Lopez, Alexandre Dehne-Garcia, Christophe Geourjon, Emmanuel Bettler, Chantal Hulo, Philippe Le Mercier, Ralf Bartenschlager, Helmut Diepolder, Darius Moradpour, Jean-Michel Pawlotsky, Charles M. Rice, Christian Trépo, François Penin, and Gilbert Deléage PMCID: PMC1669729 HepSEQ: International Public Health Repository for Hepatitis B Saravanamuttu Gnaneshan, Samreen Ijaz, Joanne Moran, Mary Ramsay, and Jonathan Green PMCID: PMC1716715 The HIV positive selection mutation database Calvin Pan, Joseph Kim, Lamei Chen, Qi Wang, and Christopher Lee PMCID: PMC1669717 Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research Suhua Chang, Jiajie Zhang, Xiaoyun Liao, Xinxing Zhu, Dahai Wang, Jiang Zhu, Tao Feng, Baoli Zhu, George F. Gao, Jian Wang, Huanming Yang, Jun Yu, and Jing Wang PMCID: PMC1781131 ViTa: prediction of host microRNAs targets on viruses Paul Wei-Che Hsu, Li-Zen Lin, Sheng-Da Hsu, Justin Bo-Kai Hsu, and Hsien-Da Huang PMCID: PMC1761424 MiST: a microbial signal transduction database Luke E. Ulrich and Igor B. Zhulin PMCID: PMC1747179 MvirDB—a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications C. E. Zhou, J. Smith, M. Lam, A. Zemla, M. D. Dyer, and T. Slezak PMCID: PMC1669772 Towards pathogenomics: a web-based resource for pathogenicity islands Sung Ho Yoon, Young-Kyu Park, Soohyun Lee, Doil Choi, Tae Kwang Oh, Cheol-Goo Hur, and Jihyun F. Kim PMCID: PMC1669727 PATRIC: The VBI PathoSystems Resource Integration Center E. E. Snyder, N. Kampanya, J. Lu, E. K. Nordberg, H. R. Karur, M. Shukla, J. Soneja, Y. Tian, T. Xue, H. Yoo, F. Zhang, C. Dharmanolla, N. V. Dongre, J. J. Gillespie, J. Hamelius, M. Hance, K. I. Huntington, D. Jukneliene, J. Koziski, L. Mackasmiel, S. P. Mane, V. Nguyen, A. Purkayastha, J. Shallom, G. Yu, Y. Guo, J. Gabbard, D. Hix, A. F. Azad, S. C. Baker, S. M. Boyle, Y. Khudyakov, X. J. Meng, C. Rupprecht, J. Vinje, O. R. Crasta, M. J. Czar, A. Dickerman, J. D. Eckart, R. Kenyon, R. Will, J. C. Setubal, and B. W. S. Sobral PMCID: PMC1669763 RegTransBase—a database of regulatory sequences and interactions in a wide range of prokaryotic genomes Alexei E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov, Adam Arkin, Andrey A. Mironov, Mikhail S. Gelfand, and Inna Dubchak PMCID: PMC1669780 The Sulfolobus database Kim Brügger PMCID: PMC1669736 VNTRDB: a bacterial variable number tandem repeat locus database Chia-Hung Chang, Yu-Chung Chang, Anthony Underwood, Chien-Shun Chiou, and Cheng-Yan Kao PMCID: PMC1781188 Xanthusbase: adapting wikipedia principles to a model organism database Bradley I. Arshinoff, Garret Suen, Eric M. Just, Sohel M. Merchant, Warren A. Kibbe, Rex L. Chisholm, and Roy D. Welch PMCID: PMC1669732 ApiDB: integrated resources for the apicomplexan bioinformatics resource center Cristina Aurrecoechea, Mark Heiges, Haiming Wang, Zhiming Wang, Steve Fischer, Philippa Rhodes, John Miller, Eileen Kraemer, Christian J. Stoeckert, Jr., David S. Roos, and Jessica C. Kissinger PMCID: PMC1669770 Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs Junichi Watanabe, Hiroyuki Wakaguri, Masahide Sasaki, Yutaka Suzuki, and Sumio Sugano PMCID: PMC1781114 ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data Olivier Arnaiz, Scott Cain, Jean Cohen, and Linda Sperling PMCID: PMC1669747 TBestDB: a taxonomically broad database of expressed sequence tags (ESTs) Emmet A. O'Brien, Liisa B. Koski, Yue Zhang, LiuSong Yang, Eric Wang, Michael W. Gray, Gertraud Burger, and B. Franz Lang PMCID: PMC1899108 Sequence resources at the Candida Genome Database Martha B. Arnaud, Maria C. Costanzo, Marek S. Skrzypek, Prachi Shah, Gail Binkley, Christopher Lane, Stuart R. Miyasato, and Gavin Sherlock PMCID: PMC1669745 The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction Alexandre Gattiker, Christa Niederhauser-Wiederkehr, James Moore, Leandro Hermida, and Michael Primig PMCID: PMC1751528 PROPHECY—a yeast phenome database, update 2006 Luciano Fernandez-Ricaud, Jonas Warringer, Elke Ericson, Kerstin Glaab, Pär Davidsson, Fabian Nilsson, Graham J. L. Kemp, Olle Nerman, and Anders Blomberg PMCID: PMC1761427 Expanded protein information at SGD: new pages and proteome browser Robert Nash, Shuai Weng, Ben Hitz, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Michael S. Livstone, Rose Oughtred, Julie Park, Marek Skrzypek, Chandra L. Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Stuart Miyasato, Anand Sethuraman, Mark Schroeder, Kara Dolinski, David Botstein, and J. Michael Cherry PMCID: PMC1669759 WormBook: the online review of Caenorhabditis elegans biology Lisa R. Girard, Tristan J. Fiedler, Todd W. Harris, Felicia Carvalho, Igor Antoshechkin, Michael Han, Paul W. Sternberg, Lincoln D. Stein, and Martin Chalfie PMCID: PMC1669767 BeetleBase: the model organism database for Tribolium castaneum Liangjiang Wang, Suzhi Wang, Yonghua Li, Martin S. R. Paradesi, and Susan J. Brown PMCID: PMC1669707 DroSpeGe: rapid access database for new Drosophila species genomes Donald G. Gilbert PMCID: PMC1899099 FlyBase: genomes by the dozen Madeline A. Crosby, Joshua L. Goodman, Victor B. Strelets, Peili Zhang, William M. Gelbart, and The FlyBase Consortium PMCID: PMC1669768 GenomeRNAi: a database for cell-based RNAi phenotypes Thomas Horn, Zeynep Arziman, Juerg Berger, and Michael Boutros PMCID: PMC1747177 Pristionchus.org: a genome-centric database of the nematode satellite species Pristionchus pacificus Christoph Dieterich, Waltraud Roeseler, Patrick Sobetzko, and Ralf J. Sommer PMCID: PMC1781148 VectorBase: a home for invertebrate vectors of human pathogens Daniel Lawson, Peter Arensburger, Peter Atkinson, Nora J. Besansky, Robert V. Bruggner, Ryan Butler, Kathryn S. Campbell, George K. Christophides, Scott Christley, Emmanuel Dialynas, David Emmert, Martin Hammond, Catherine A. Hill, Ryan C. Kennedy, Neil F. Lobo, M. Robert MacCallum, Greg Madey, Karine Megy, Seth Redmond, Susan Russo, David W. Severson, Eric O. Stinson, Pantelis Topalis, Evgeny M. Zdobnov, Ewan Birney, William M. Gelbart, Fotis C. Kafatos, Christos Louis, and Frank H. Collins PMCID: PMC1751530 WormBase: new content and better access Tamberlyn Bieri, Darin Blasiar, Philip Ozersky, Igor Antoshechkin, Carol Bastiani, Payan Canaran, Juancarlos Chan, Nansheng Chen, Wen J. Chen, Paul Davis, Tristan J. Fiedler, Lisa Girard, Michael Han, Todd W. Harris, Ranjana Kishore, Raymond Lee, Sheldon McKay, Hans-Michael Müller, Cecilia Nakamura, Andrei Petcherski, Arun Rangarajan, Anthony Rogers, Gary Schindelman, Erich M. Schwarz, Will Spooner, Mary Ann Tuli, Kimberly Van Auken, Daniel Wang, Xiaodong Wang, Gary Williams, Richard Durbin, Lincoln D. Stein, Paul W. Sternberg, and John Spieth PMCID: PMC1669750 BRENDA, AMENDA and FRENDA: the enzyme information system in 2007 Jens Barthelmes, Christian Ebeling, Antje Chang, Ida Schomburg, and Dietmar Schomburg PMCID: PMC1899097 MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms Gemma L. Holliday, Daniel E. Almonacid, Gail J. Bartlett, Noel M. O'Boyle, James W. Torrance, Peter Murray-Rust, John B. O. Mitchell, and Janet M. Thornton PMCID: PMC1634735 HMDB: the Human Metabolome Database David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, An Chi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David. D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russ Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, and Lori Querengesser PMCID: PMC1899095 LMSD: LIPID MAPS structure database Manish Sud, Eoin Fahy, Dawn Cotter, Alex Brown, Edward A. Dennis, Christopher K. Glass, Alfred H. Merrill, Jr, Robert C. Murphy, Christian R. H. Raetz, David W. Russell, and Shankar Subramaniam PMCID: PMC1669719 SYSTOMONAS — an integrated database for systems biology analysis of Pseudomonas Claudia Choi, Richard Münch, Stefan Leupold, Johannes Klein, Inga Siegel, Bernhard Thielen, Beatrice Benkert, Martin Kucklick, Max Schobert, Jens Barthelmes, Christian Ebeling, Isam Haddad, Maurice Scheer, Andreas Grote, Karsten Hiller, Boyke Bunk, Kerstin Schreiber, Ida Retter, Dietmar Schomburg, and Dieter Jahn PMCID: PMC1899106 CellCircuits: a database of protein network models H. Craig Mak, Mike Daly, Bianca Gruebel, and Trey Ideker PMCID: PMC1751555 CutDB: a proteolytic event database Yoshinobu Igarashi, Alexey Eroshkin, Svetlana Gramatikova, Kosi Gramatikoff, Ying Zhang, Jeffrey W. Smith, Andrei L. Osterman, and Adam Godzik PMCID: PMC1669773 CYCLONET—an integrated database on cell cycle regulation and carcinogenesis Fedor Kolpakov, Vladimir Poroikov, Ruslan Sharipov, Yury Kondrakhin, Alexey Zakharov, Alexey Lagunin, Luciano Milanesi, and Alexander Kel PMCID: PMC1899094 DOMINO: a database of domain–peptide interactions Arnaud Ceol, Andrew Chatr-aryamontri, Elena Santonico, Roberto Sacco, Luisa Castagnoli, and Gianni Cesareni PMCID: PMC1751533 IntAct—open source resource for molecular interaction data S. Kerrien, Y. Alam-Faruque, B. Aranda, I. Bancarz, A. Bridge, C. Derow, E. Dimmer, M. Feuermann, A. Friedrichsen, R. Huntley, C. Kohler, J. Khadake, C. Leroy, A. Liban, C. Lieftink, L. Montecchi-Palazzi, S. Orchard, J. Risse, K. Robbe, B. Roechert, D. Thorneycroft, Y. Zhang, R. Apweiler, and H. Hermjakob PMCID: PMC1751531 Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States, and H. V. Jagadish PMCID: PMC1716720 MINT: the Molecular INTeraction database Andrew Chatr-aryamontri, Arnaud Ceol, Luisa Montecchi Palazzi, Giuliano Nardelli, Maria Victoria Schneider, Luisa Castagnoli, and Gianni Cesareni PMCID: PMC1751541 PROTCOM: searchable database of protein complexes enhanced with domain–domain structures Petras J. Kundrotas and Emil Alexov PMCID: PMC1635331 SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein–Protein Interactions Emily R. Jefferson, Thomas P. Walsh, Timothy J. Roberts, and Geoffrey J. Barton PMCID: PMC1899103 UniHI: an entry gate to the human protein interactome Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter Herzel, Erich E. Wanker, and Matthias E. Futschik PMCID: PMC1781159 Hedgehog Signaling Pathway Database: a repository of current annotation efforts and resources for the Hh research community Kieran Hervold, Andrew Martin, Roger A. Kirkpatrick, Paul F. Mc Kenna, and F. A. Ramirez-Weber PMCID: PMC1781108 AgBase: a unified resource for functional analysis in agriculture Fiona M. McCarthy, Susan M. Bridges, Nan Wang, G. Bryce Magee, W. Paul Williams, Dawn S. Luthe, and Shane C. Burgess PMCID: PMC1751552 AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond Zhi-Liang Hu, Eric Ryan Fritz, and James M. Reecy PMCID: PMC1781224 Ensembl 2007 T. J. P. Hubbard, B. L. Aken, K. Beal, B. Ballester, M. Caccamo, Y. Chen, L. Clarke, G. Coates, F. Cunningham, T. Cutts, T. Down, S. C. Dyer, S. Fitzgerald, J. Fernandez-Banet, S. Graf, S. Haider, M. Hammond, J. Herrero, R. Holland, K. Howe, K. Howe, N. Johnson, A. Kahari, D. Keefe, F. Kokocinski, E. Kulesha, D. Lawson, I. Longden, C. Melsopp, K. Megy, P. Meidl, B. Ouverdin, A. Parker, A. Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, J. Severin, G. Slater, D. Smedley, G. Spudich, S. Trevanion, A. Vilella, J. Vogel, S. White, M. Wood, T. Cox, V. Curwen, R. Durbin, X. M. Fernandez-Suarez, P. Flicek, A. Kasprzyk, G. Proctor, S. Searle, J. Smith, A. Ureta-Vidal, and E. Birney PMCID: PMC1761443 The mouse Gene Expression Database (GXD): 2007 update Constance M. Smith, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Janan T. Eppig, James A. Kadin, Joel E. Richardson, and Martin Ringwald PMCID: PMC1716716 MamPol: a database of nucleotide polymorphism in the Mammalia class Raquel Egea, Sònia Casillas, Enol Fernández, Miquel Àngel Senar, and Antonio Barbadilla PMCID: PMC1669741 The mouse genome database (MGD): new features facilitating a model system Janan T. Eppig, Judith A. Blake, Carol J. Bult, James A. Kadin, Joel E. Richardson, and the Mouse Genome Database Group PMCID: PMC1751527 Mouse Tumor Biology Database (MTB): status update and future directions Dale A. Begley, Debra M. Krupke, Matthew J. Vincent, John P. Sundberg, Carol J. Bult, and Janan T. Eppig PMCID: PMC1751545 Mouse Phenome Database (MPD) Molly A. Bogue, Stephen C. Grubb, Terry P. Maddatu, and Carol J. Bult PMCID: PMC1781116 PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10  147 porcine full-length cDNA sequences Hirohide Uenishi, Tomoko Eguchi-Ogawa, Hiroki Shinkai, Naohiko Okumura, Kohei Suzuki, Daisuke Toki, Noriyuki Hamasima, and Takashi Awata PMCID: PMC1751553 PigGIS: Pig Genomic Informatics System Jue Ruan, Yiran Guo, Heng Li, Yafeng Hu, Fei Song, Xin Huang, Karsten Kristiensen, Lars Bolund, and Jun Wang PMCID: PMC1669765 The Rat Genome Database, update 2007—Easing the path from disease to data and back again Simon N. Twigger, Mary Shimoyama, Susan Bromberg, Anne E. Kwitek, Howard J. Jacob, and the RGD Team PMCID: PMC1761441 The ENCODE Project at UC Santa Cruz Daryl J. Thomas, Kate R. Rosenbloom, Hiram Clawson, Angie S. Hinrichs, Heather Trumbower, Brian J. Raney, Donna Karolchik, Galt P. Barber, Rachel A. Harte, Jennifer Hillman-Jackson, Robert M. Kuhn, Brooke L. Rhead, Kayla E. Smith, Archana Thakkapallayil, Ann S. Zweig, David Haussler, W. James Kent, and The ENCODE Project Consortium PMCID: PMC1781110 The UCSC genome browser database: update 2007 R. M. Kuhn, D. Karolchik, A. S. Zweig, H. Trumbower, D. J. Thomas, A. Thakkapallayil, C. W. Sugnet, M. Stanke, K. E. Smith, A. Siepel, K. R. Rosenbloom, B. Rhead, B. J. Raney, A. Pohl, J. S. Pedersen, F. Hsu, A. S. Hinrichs, R. A. Harte, M. Diekhans, H. Clawson, G. Bejerano, G. P. Barber, R. Baertsch, D. Haussler, and W. J. Kent PMCID: PMC1669757 GeneSpeed: protein domain organization of the transcriptome Alecksandr Kutchma, Nayeem Quayum, and Jan Jensen PMCID: PMC1716729 PlasmID: a centralized repository for plasmid clone information and distribution Dongmei Zuo, Stephanie E. Mohr, Yanhui Hu, Elena Taycher, Andreas Rolfs, Jason Kramer, Janice Williamson, and Joshua LaBaer PMCID: PMC1716714 D-HaploDB: a database of definitive haplotypes determined by genotyping complete hydatidiform mole samples Koichiro Higasa, Katsuyuki Miyatake, Yoji Kukita, Tomoko Tahira, and Kenshi Hayashi PMCID: PMC1781173 FINDbase: a relational database recording frequencies of genetic defects leading to inherited disorders worldwide Sjozef van Baal, Polynikis Kaimakis, Manyphong Phommarinh, Daphne Koumbi, Harry Cuppens, Francesca Riccardino, Milan Macek, Jr, Charles R. Scriver, and George P. Patrinos PMCID: PMC1747180 PhenomicDB: a new cross-species genotype/phenotype resource Philip Groth, Nadia Pavlova, Ivan Kalev, Spas Tonov, Georgi Georgiev, Hans-Dieter Pohlenz, and Bertram Weiss PMCID: PMC1781118 PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease Anil G. Jegga, Sivakumar Gowrisankar, Jing Chen, and Bruce J. Aronow PMCID: PMC1669724 Snap: an integrated SNP annotation platform Shengting Li, Lijia Ma, Heng Li, Søren Vang, Yafeng Hu, Lars Bolund, and Jun Wang PMCID: PMC1751554 SNP@Ethnos: a database of ethnically variant single-nucleotide polymorphisms Jungsun Park, Sohyun Hwang, Yong Seok Lee, Sang-Cheol Kim, and Doheon Lee PMCID: PMC1747186 Variation resources at UC Santa Cruz Daryl J. Thomas, Heather Trumbower, Andrew D. Kern, Brooke L. Rhead, Robert M. Kuhn, David Haussler, and W. James Kent PMCID: PMC1781230 CancerGenes: a gene selection resource for cancer genome projects Maureen E. Higgins, Martine Claremont, John E. Major, Chris Sander, and Alex E. Lash PMCID: PMC1781153 OncoDB.HCC: an integrated oncogenomic database of hepatocellular carcinoma revealed aberrant cancer target genes and loci Wen-Hui Su, Chuan-Chuan Chao, Shiou-Hwei Yeh, Ding-Shinn Chen, Pei-Jer Chen, and Yuh-Shan Jou PMCID: PMC1669730 KBERG: KnowledgeBase for Estrogen Responsive Genes Suisheng Tang, Zhuo Zhang, Sin Lam Tan, Man-Hung Eric Tang, Arun Prashanth Kumar, Suresh Kumar Ramadoss, and Vladimir B. Bajic PMCID: PMC1669744 SynDB: a Synapse protein DataBase based on synapse ontology Wuxue Zhang, Yong Zhang, Hui Zheng, Chen Zhang, Wei Xiong, John G. Olyarchuk, Michael Walker, Weifeng Xu, Min Zhao, Shuqi Zhao, Zhuan Zhou, and Liping Wei PMCID: PMC1669723 T1DBase: integration and presentation of complex data for type 1 diabetes research Erin M. Hulbert, Luc J. Smink, Ellen C. Adlem, James E. Allen, David B. Burdick, Oliver S. Burren, Christopher C. Cavnor, Geoffrey E. Dolman, Daisy Flamez, Karen F. Friery, Barry C. Healy, Sarah A. Killcoyne, Burak Kutlu, Helen Schuilenburg, Neil M. Walker, Josyf Mychaleckyj, Decio L. Eizirik, Linda S. Wicker, John A. Todd, and Nathan Goodman PMCID: PMC1781218 ArrayExpress—a public database of microarray experiments and gene expression profiles H. Parkinson, M. Kapushesky, M. Shojatalab, N. Abeygunawardena, R. Coulson, A. Farne, E. Holloway, N. Kolesnykov, P. Lilja, M. Lukk, R. Mani, T. Rayner, A. Sharma, E. William, U. Sarkans, and A. Brazma PMCID: PMC1716725 EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes Joan M. Mazzarelli, John Brestelli, Regina K. Gorski, Junmin Liu, Elisabetta Manduchi, Deborah F. Pinney, Jonathan Schug, Peter White, Klaus H. Kaestner, and Christian J. Stoeckert, Jr PMCID: PMC1781120 Gene Aging Nexus: a web database and data mining platform for microarray data on aging Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias, Kangyu Zhang, Kiran Kamath, Michael S. Waterman, Caleb E. Finch, and Xianghong Jasmine Zhou PMCID: PMC1669755 NCBI GEO: mining tens of millions of expression profiles—database and tools update Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite, Pierre Ledoux, Dmitry Rudnev, Carlos Evangelista, Irene F. Kim, Alexandra Soboleva, Maxim Tomashevsky, and Ron Edgar PMCID: PMC1669752 The Stanford Microarray Database: implementation of new analysis tools and open source release of software Janos Demeter, Catherine Beauheim, Jeremy Gollub, Tina Hernandez-Boussard, Heng Jin, Donald Maier, John C. Matese, Michael Nitzberg, Farrell Wymore, Zachariah K. Zachariah, Patrick O. Brown, Gavin Sherlock, and Catherine A. Ball PMCID: PMC1781111 MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes Yanling Zhang, Yong Zhang, Jun Adachi, Jesper V. Olsen, Rong Shi, Gustavo de Souza, Erica Pasini, Leonard J. Foster, Boris Macek, Alexandre Zougman, Chanchal Kumar, Jacek R. Wiśniewski, Wang Jun, and Matthias Mann PMCID: PMC1781136 The Online Bioinformatics Resources Collection at the University of Pittsburgh Health Sciences Library System—a one-stop gateway to online bioinformatics databases and software tools Yi-Bu Chen, Ansuman Chattopadhyay, Phillip Bergen, Cynthia Gadd, and Nancy Tannery PMCID: PMC1669712 DisProt: the Database of Disordered Proteins Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Agnes Tantos, Beata Szabo, Peter Tompa, Jake Chen, Vladimir N. Uversky, Zoran Obradovic, and A. Keith Dunker PMCID: PMC1751543 PharmGED: Pharmacogenetic Effect Database C. J. Zheng, L. Y. Han, B. Xie, C. Y. Liew, S. Ong, J. Cui, H. L. Zhang, Z. Q. Tang, S. H. Gan, L. Jiang, and Y. Z. Chen PMCID: PMC1761431 probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007 Alexander Loy, Frank Maixner, Michael Wagner, and Matthias Horn PMCID: PMC1669758 qPrimerDepot: a primer database for quantitative real time PCR Wenwu Cui, Dennis D. Taub, and Kevin Gardner PMCID: PMC1635330 Organelle DB: an updated resource of eukaryotic protein localization and function Nuwee Wiwatwattana, Christopher M. Landau, G. Jamie Cope, Gabriel A. Harp, and Anuj Kumar PMCID: PMC1716721 PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease Agatha Schlüter, Stéphane Fourcade, Enric Domènech-Estévez, Toni Gabaldón, Jaime Huerta-Cepas, Guillaume Berthommier, Raymond Ripp, Ronald J. A. Wanders, Olivier Poch, and Aurora Pujol PMCID: PMC1747181 An enhanced MITOMAP with a global mtDNA mutational phylogeny Eduardo Ruiz-Pesini, Marie T. Lott, Vincent Procaccio, Jason C. Poole, Marty C. Brandon, Dan Mishmar, Christina Yi, James Kreuziger, Pierre Baldi, and Douglas C. Wallace PMCID: PMC1781213 CSRDB: a small RNA integrated database and browser resource for cereals Cameron Johnson, Lewis Bowman, Alex T. Adai, Vicki Vance, and Venkatesan Sundaresan PMCID: PMC1781248 MIPSPlantsDB—plant database resource for integrative and comparative plant genome research Manuel Spannagl, Octave Noubibou, Dirk Haase, Li Yang, Heidrun Gundlach, Tobias Hindemitt, Kathrin Klee, Georg Haberer, Heiko Schoof, and Klaus F. X. Mayer PMCID: PMC1899105 PathoPlant®: a platform for microarray expression data to analyze co-regulated genes involved in plant defense responses Lorenz Bülow, Martin Schindler, and Reinhard Hehl PMCID: PMC1669748 The TIGR Plant Transcript Assemblies database Kevin L. Childs, John P. Hamilton, Wei Zhu, Eugene Ly, Foo Cheung, Hank Wu, Pablo D. Rabinowicz, Chris D. Town, C. Robin Buell, and Agnes P. Chan PMCID: PMC1669722 POGs/PlantRBP: a resource for comparative genomics in plants Nigel S. Walker, Nicholas Stiffler, and Alice Barkan PMCID: PMC1669711 AthaMap web tools for the analysis and identification of co-regulated genes Claudia Galuschka, Martin Schindler, Lorenz Bülow, and Reinhard Hehl PMCID: PMC1761422 ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis Takeshi Obayashi, Kengo Kinoshita, Kenta Nakai, Masayuki Shibaoka, Shinpei Hayashi, Motoshi Saeki, Daisuke Shibata, Kazuki Saito, and Hiroyuki Ohta PMCID: PMC1716726 BASC: an integrated bioinformatics system for Brassica research Timothy A. Erwin, Erica G. Jewell, Christopher G. Love, Geraldine A. C. Lim, Xi Li, Ross Chapman, Jacqueline Batley, Jason E. Stajich, Emmanuel Mongin, Elia Stupka, Bruce Ross, German Spangenberg, and David Edwards PMCID: PMC1761444 GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions Yong Li, Mario G. Rosso, Prisca Viehoever, and Bernd Weisshaar PMCID: PMC1781121 PlantQTL-GE: a database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information Huazong Zeng, Lijun Luo, Weixiong Zhang, Jie Zhou, Zuofeng Li, Hongyan Liu, Tiansheng Zhu, Xiangqian Feng, and Yang Zhong PMCID: PMC1669735 The TIGR Rice Genome Annotation Resource: improvements and new features Shu Ouyang, Wei Zhu, John Hamilton, Haining Lin, Matthew Campbell, Kevin Childs, Françoise Thibaud-Nissen, Renae L. Malek, Yuandan Lee, Li Zheng, Joshua Orvis, Brian Haas, Jennifer Wortman, and C. Robin Buell PMCID: PMC1751532 ForestTreeDB: a database dedicated to the mining of tree transcriptomes Nathalie Pavy, James J. Johnson, John A. Crow, Charles Paule, Timothy Kunau, John MacKay, and Ernest F. Retzel PMCID: PMC1716727 MaizeGDB's new data types, resources and activities Carolyn J. Lawrence, Mary L. Schaeffer, Trent E. Seigfried, Darwin A. Campbell, and Lisa C. Harper PMCID: PMC1899092 TomatEST database: in silico exploitation of EST data to explore expression patterns in tomato species Nunzio D'Agostino, Mario Aversano, Luigi Frusciante, and Maria Luisa Chiusano PMCID: PMC1669777 SuperHapten: a comprehensive database for small immunogenic compounds Stefan Günther, Dorothea Hempel, Mathias Dunkel, Kristian Rother, and Robert Preissner PMCID: PMC1669746 |
