|
|
Use these buttons to move to the major sections |
|
|
|
|
|
Plant Genomes Central - Genome Projects in Progress |
|
The effort to determine the nucleotide sequence of a plant genome has one technical hurdle relative to other genomic efforts. The range of plant genome size is very large extending from approximately the same size as the genome of many small animals through more than five times as large as the human genome for many of the domesticated crops to almost forty times as large as the human genome for some ornamental flowers. Despite this hurdle a number of plant genomes have been sequenced. Due to the significant impact that knowledge of genome sequence has been shown to have on dissection of plant biology, the genome sequences of more organisms are expected to be completed. The list of plant sequencing projects in this page includes those that have reached the stage where active sequence determination is currently producing, or is expected to produce in the near future, GenBank accessions toward the goal of determining the sequence of that plant genome. A page of all the land plants for which a group has publicly stated the desire to determine the nucleotide sequence for the organism is available elsewhere.
Within Completed Large-Scale Sequencing Projects and Genetic Mapping Projects the number of available maps for a particular organism is indicated by the integer within brackets preceding the Linnaean binomial name of the organism. For Completed Large-Scale Sequencing Projects and In-progress Large-Scale Sequencing Projects the organism name links to the overview page for the organism in Entrez GenomeProject while in Genetic Maps the organism name links to the MapView overview page for that organism. The MapView of a particular chromosome or organelle is accessed by following the link for that chromosome or organelle. For the Large-Scale EST Sequencing Projects group, the organism name links to the taxonomy page at NCBI. For those organisms that have at least 40,000 ESTs in GenBank, NCBI prepares a BLASTable database of these and provides a link to the resource on this page.
|
|
Plant-oriented Resources at NCBI |
|
- Open a new window with the Keygene nomenclature for AFLP® primers
- Go to the multi-species plant genome map search:
- Go to the customized plant genome BLAST
- This BLAST database includes three datasets:
- GenBank sequences derived from nucleic acid used to identify mapped genetic loci in genetic maps of Avena sativa (oat), Glycine max (soybean), Hordeum vulgare (barley), Oryza sativa (rice), Solanum lycopersicum (tomato), Triticum aestivum (wheat), and Zea mays (corn)
- The two collections of contigs developed by the Chinese WGS endeavors
- The whole-genome material for the Arabidopsis thaliana genome and the Oryza sativa genome
- Go to PlantEST BLAST
- This is a collection of organism-specific BLAST databases of the ESTs for those organisms with:
- more than 40,000 EST submissions
- genetic maps visible in MapViewer regardless of the number of EST submissions
|
|
Completed Large-Scale Sequencing Projects |
![back to top](https://webarchive.library.unt.edu/eot2008/20090117054706im_/http://www.ncbi.nlm.nih.gov/mapview/static/arrowup.gif) |
- [15] Arabidopsis thaliana (thale cress)
- 5 chromosomes:
1,
2,
3,
4,
5,
plastid,
mitochondrion
- Glycine max (soybean)
- 20 chromosomes:
A1, A2, B1, B2, C1, C2, D1a, D1b, D2, E, F, G, H, I, J, K, L, M, N, O,
plastid, mitochondrion
- Medicago truncatula (barrel medic)
- 8 chromosomes: 1, 2, 3, 4, 5, 6, 7, 8
plastid, mitochondrion
- [11] Oryza sativa (rice)
- 12 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
plastid
, mitochondrion, mitochondrial plasmid B1, mitochondrial plasmid B2
- [5] Populus trichocarpa (black cottonwood)
- 19 chromosomes:
I,
II,
III,
IV,
V,
VI,
VII,
VIII,
IX,
X,
XI,
XII,
plastid, mitochondrion
- Sorghum bicolor
- 10 chromosomes:
1, 2, 3, 4, 5, 6, 7, 8, 9, 10,
plastid, mitochondrion
- Zea mays (corn)
- 10 chromosomes:
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,
plastid,
mitochondrion,
mitochondrial 1.9 kb plasmid
|
|
In-progress Large-Scale Sequencing Projects - funded, genome sequence expected in GenBank |
![back to top](https://webarchive.library.unt.edu/eot2008/20090117054706im_/http://www.ncbi.nlm.nih.gov/mapview/static/arrowup.gif) |
- Brachypodium distachyon
- 5 chromosomes:
1, 2, 3, 4, 5,
plastid, mitochondrion
- Lotus japonicus (lotus)
- 6 chromosomes:
1, 2, 3, 4, 5, 6,
plastid,
mitochondrion
- Manihot esculenta (cassava)
- 20 chromosomes:
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,
plastid, mitochondrion
- Solanum lycopersicum (tomato)
- 12 chromosomes:
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,
plastid,
mitochondrion
- Solanum tuberosum (potato)
- 12 chromosomes:
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,
plastid, mitochondrion
|
|
Genetic Maps |
![back to top](https://webarchive.library.unt.edu/eot2008/20090117054706im_/http://www.ncbi.nlm.nih.gov/mapview/static/arrowup.gif) |
- [1] Aegilops longissima (diploid wheat)
- 7 chromosomes:
1Sl, 2Sl, 3Sl, 4Sl, 5Sl, 6Sl, 7Sl,
plastid, mitochondrion
- [2] Aegilops tauschi (diploid progenitor of wheat D genome)
- 7 chromosomes:
1D,
2D,
3D,
4D,
5D,
6D,
7D,
plastid, mitochondrion
- [1] Aegilops umbellulata (diploid wheat)
- 7 chromosomes:
1U,
2U,
3U,
4U,
5U,
6U,
7U,
plastid, mitochondrion
- [1] Allium cepa (onion)
- 8 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
plastid, mitochondrion
- [1] Apium graveolens (celery)
- 11 chromosomes: A1, A2, A3, A4, A5, A6, A7, A8, A9, A10, A11,
plastid, mitochondrion
- [2] Asparagus officinalis (garden asparagus)
- 10 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
plastid, mitochondrion
- [3] Avena sativa (oat)
- 7 chromosomes:
A,
B,
C,
D,
E,
F,
G,
plastid, mitochondrion
- [2] Beta vulgaris (beet)
- 9 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
plastid, mitochondrion
- [1] Brassica juncea (Indian mustard)
- 18 chromosomes:
LG1,
LG2,
LG3,
LG4,
LG5,
LG6,
LG7,
LG8,
LG9,
LG10,
LG11,
LG12,
LG13,
LG14,
LG15,
LG16,
LG17,
LG18,
plastid, mitochondrion
- [6] Brassica napus (oilseed rape)
- 19 chromosomes:
N1,
N2,
N3,
N4,
N5,
N6,
N7,
N8,
N9,
N10,
N11,
N12,
N13,
N14,
N15,
N16,
N17,
N18,
N19,
plastid, mitochondrion
- [1] Brassica nigra (black mustard)
- 8 chromosomes:
LG1,
LG2,
LG3,
LG4,
LG5,
LG6,
LG7,
LG8,
plastid, mitochondrion
- [5] Brassica oleracea
- 9 chromosomes:
C1,
C2,
C3,
C4,
C5,
C6,
C7,
C8,
C9,
plastid, mitochondrion
- [1] Brassica rapa (field mustard)
- 10 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
plastid, mitochondrion
- [11] Capsicum annuum (pepper)
- 12 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
plastid, mitochondrion
- [1] Citrus maxima (pomelo orange)
- 9 chromosomes: I, II, III, IV, V, VI, VII, VIII, IX,
plastid, mitochondrion
- [2] Daucus carota (carrot)
- 9 chromosomes: A, B, C, D, E, F, G, H, I,
plastid, mitochondrion
- [1] Eleusine coracana (finger millet)
- 18 chromosomes:
1A, 1B, 2A, 2B, 3A, 3B, 4A, 4B, 5A, 5B, 6A, 6B, 7A, 7B, 8A, 8B, 9A, 9B,
plastid, mitochondrion
- [1] Eragrostis tef (tef)
- 20 chromosomes:
A,
B,
C,
D,
E,
F,
G,
H,
I,
J,
K,
L,
M,
N,
O,
P,
Q,
R,
S,
T,
plastid, mitochondrion
- [1] Festuca pratensis (meadow fescue)
- 7 chromosomes:
1F, 2F, 3F, 4F, 5F, 6F, 7F,
plastid, mitochondrion
- [2] Glycine max (soybean)
- 20 chromosomes:
A1,
A2,
B1,
B2,
C1,
C2,
D1a,
D1b,
D2,
E,
F,
G,
H,
I,
J,
K,
L,
M,
N,
O,
plastid, mitochondrion
- [1] Hevea brasiliensis (latex rubber tree)
- 18 chromosomes:
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,
plastid, mitochondrion
- [1] Hordeum bulbosum
- 7 chromosomes:
1,
2,
3,
4,
5,
6,
7,
plastid, mitochondrion
- [17] Hordeum vulgare (barley)
- 7 chromosomes:
1H,
2H,
3H,
4H,
5H,
6H,
7H,
plastid, mitochondrion
- [1] Limnanthes alba (meadowfoam)
- 5 chromosomes:
1, 2, 3, 4, 5,
plastid, mitochondrion
- [1] Lolium perenne (perennial ryegrass)
- 7 chromosomes:
1,
2,
3,
4,
5,
6,
7,
plastid, mitochondrion
- [1] Lotus japonicus (lotus)
- 6 chromosomes:
1,
2,
3,
4,
5,
6,
plastid,
mitochondrion
- [4] Manihot esculenta (cassava)
- 20 chromosomes:
A,
B,
C,
D,
E,
F,
G,
H,
I,
J,
K,
L,
M,
N,
O,
P,
Q,
R,
S,
plastid, mitochondrion
- [1] Medicago sativa (alfalfa)
- 8 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
plastid, mitochondrion
- [4] Medicago truncatula (barrel medic)
- 8 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
plastid, mitochondrion
- [15] Oryza sativa (rice)
- 12 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
plastid
, mitochondrion, mitochondrial plasmid B1,
mitochondrial plasmid B2
- [5] Pennisetum glaucum (pearl millet)
- 7 chromosomes:
1, 2, 3, 4, 5, 6, 7,
plastid, mitochondrion
- [5] Phaseolus vulgaris (cultivated bean)
- 11 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
plastid, mitochondrion
- [3] Prunus armeniaca (apricot)
- 8 chromosomes:
G1, G2, G3, G4, G5, G6, G7, G8,
plastid, mitochondrion
- [4] Prunus dulcis (almond)
- 8 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
plastid, mitochondrion
- [2] Quercus robur (pedunculate oak)
- 12 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
plastid, mitochondrion
- [1] Rubus idaeus (red raspberry)
- 7 chromosomes:
G1, G2, G3, G4, G5, G6, G7, G8,
plastid, mitochondrion
- [10] Secale cereale (rye)
- 7 chromosomes:
1R,
2R,
3R,
4R,
5R,
6R,
7R,
plastid, mitochondrion
- [2] Setaria italica (foxtail millet)
- 9 chromosomes:
I,
II,
III,
IV,
V,
VI,
VII,
VIII,
IX,
plastid, mitochondrion
- [2] Solanum lycopersicoides (wild nightshade)
- 11 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
plastid, mitochondrion
- [13] Solanum lycopersicum (tomato)
- 12 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
plastid,
mitochondrion
- [1] Solanum melongena (eggplant)
- 12 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
plastid, mitochondrion
- [1] Solanum peruvianum (Peruvian tomato)
- 12 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
plastid, mitochondrion
- [4] Solanum tuberosum (potato)
- 12 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
plastid, mitochondrion
- [11] Sorghum
- 10 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
plastid, mitochondrion
- [2] Theobroma cacao (cocoa)
- 10 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
plastid, mitochondrion
- [13] Triticum aestivum (bread wheat)
- 21 chromosomes:
1A,
1B,
1D,
2A,
2B,
2D,
3A,
3B,
3D,
4A,
4B,
4D,
5A,
5B,
5D,
6A,
6B,
6D,
7A,
7B,
7D,
plastid, mitochondrion
- [1] Triticum monococcum (diploid cultivated wheat)
- 7 chromosomes:
1m, 2m, 3m, 4m, 5m, 6m, 7m,
plastid, mitochondrion
- [2] Triticum turgidum (poulard wheat)
- 14 chromosomes:
1A,
1B,
2A,
2B,
3A,
3B,
4A,
4B,
5A,
5B,
6A,
6B,
7A,
7B,
plastid, mitochondrion
- [17] Vitis vinifera (wine grape)
- 19 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
plastid, mitochondrion
- [1] Vigna radiata (mungbean)
- 11 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
plastid, mitochondrion
- [12] Zea mays (corn)
- 10 chromosomes:
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
plastid,
mitochondrion,
mitochondrial 1.9 kb plasmid
|
|
Large-Scale EST Sequencing Projects |
![back to top](https://webarchive.library.unt.edu/eot2008/20090117054706im_/http://www.ncbi.nlm.nih.gov/mapview/static/arrowup.gif) |
|
|
|
Revised December 2, 2008. |
This page is valid HTML 4.01. |
|