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You are here: USDA > APHIS > VS > CEAH > CEI > Emerging Animal Health Issues

Emerging Animal Health Issues
List of Emerging Animal Health Issues Projects

Current Projects
Past Projects
Methods Development
The premise of CEI's emerging issues identification work is that information which could provide early warning of an emerging event is available, however, capturing and processing the information requires new approaches.  To that end, CEI has a number of projects underway developing and evaluating new approaches.  CEI is applying "text-mining" technology to allow it to continuously scan the Web, news wires, and e-mail discussion groups for information about animal health issues.  Daily feeds from these internet and other on-line sources populate a master database against which powerful search and analysis capabilities are applied to extract items pointing to disease outbreaks and other emerging health situations.  In collaboration with other VS offices, CEI launched an intranet web site to facilitate on-line information exchanges on emerging animal health issues within APHIS.  Agency professionals worldwide will be able to share current information on animal health events.   Finally, CEI is exploring the viability of establishing networks of private and public veterinarians connected through the Internet to exchange information on unique animal health and disease events.

Analytical Projects
CEI's analytical projects range from work describing particular disease syndromes to work exploring the potential impact of climatic events and environmental concerns on animal health.  CEI evaluates the potential impact of animal health events in other countries on the United States.  CEI also summarizes the "state-of-knowledge" for selected emerging conditions.



Epizootiology and Ecology of Western Equine Encephalomyelitis (WEE)
Western equine encephalomyelitis (WEE) is an arthropod-borne virus infection that is confined to the Western Hemisphere and is caused by a WEE complex of four closely related viruses. WEE virus is associated more frequently with disease in animals and humans than are the remaining members of the WEE complex.  WEE virus has been isolated from horses, wild birds, mammals, mosquitoes and humans in numerous states west of the Mississippi River. 


Recent Spread of Highly Pathogenic (H5N1) Avian Influenza in Birds (PDF 183KB)
During the spring and summer of 2005, highly pathogenic avian influenza (HPAI, subtype H5N1) started spreading westward out of Southeast Asia, where it has been circulating for several years. By the fall, HPAI was reported in poultry and/or wild birds in several countries in Central Asia and around the Black Sea. The range of HPAI expanded rapidly beginning in 2006, and by the end of April, H5N1 virus had been found in 34 countries not previously reporting the disease.


Epizootiology and Ecology of Anthrax

This paper describes what is known about the ecology of anthrax, and it reviews several significant outbreaks of anthrax in livestock populations in the US and abroad. The epizootics reviewed herein included a period of at least 30 years (1971 to 2001), three continents (North America, Australia, Africa), four countries/provinces (the United States, Canada, Namibia, Victoria) and two broad classifications of animals (domesticated livestock and wildlife). Anthrax epizootics in livestock and wildlife are restricted to specific geographical regions, regardless of continent, country, or geopolitical unit within a given country. Epizootics in livestock in the US are restricted to states west of the Mississippi River. Similarly, epizootics of anthrax in livestock and bison in Canada have been restricted to the western provinces.



Caliciviruses of Animals in the United States
Caliciviruses of animals in the US first began to receive attention approximately 70 years ago. Since then, numerous caliciviruses have been isolated from a variety of animal species. The epizootics of rabbit hemorrhagic disease in the US in 2000 and 2001, and the reported isolation of a “vesicular exanthema of swine-like calicivirus” from an aborted bovine fetus in 2002 have heightened concerns about the roles of caliciviruses in diseases of animals. This paper provides the reader with an introduction to the caliciviruses of animals. The current taxonomy, natural history, epidemiology, clinical signs, zoonotic aspects, and the significance of caliciviruses in animal health were discussed.
 

Animal Health Hazards of Concern During Natural Disasters
The objective of this paper is to describe some of the major natural disasters that have occurred in the U.S. during recent years and to review some infectious and non-infectious hazards that, at the very least, are perceived to be related directly to natural disasters. The number and types of natural disasters, the basic ecology and epidemiology of several infectious hazards that are thought to be affected by the climatic and environmental changes during natural disasters, and the impact of natural disasters on some non-infectious hazards of animals are presented.


Epizootiology and Ecology of Eastern Equine Encephalomyelitis (EEE)
Eastern equine encephalomyelitis viruses (EEEV) are members of the Alphavirus genus, family Togaviridae.  EEEV can be transmitted to equines and humans during the bite of an infected mosquito.  In addition to horses and humans, EEEV can produce severe disease in common livestock species such as swine and cattle.  EEEV, or virus-specific antibodies, have been recovered from birds such as the turkey, pheasant, quail, ostrich, and emu, among others.  Other animals in which EEEV have been found are the turtle, snake, hamster, and fish.  In addition to the mosquito, EEEV have been isolated from the horse fly, blackfly, mite, lice, and Culicoides spp.  The majority of EEEV isolates have been from only 27 species of mosquito, and a high percentage of the isolates have been from a single species of mosquito, Culiseta melanura.


Emerging Animal Health Issues Identification and Analysis Training Course
This is a training course CEI offers approximately every two years. The objectives of the course are to:
  • Develop an understanding of surveillance for and analysis of emerging animal health issues, and how they differ from surveillance and analysis for known and established animal health issues;

  • Learn about specific methods and techniques for surveillance and analysis of emerging animal health issues, including hands-on usage of data sources and databases;

  • Explore the design and implement a system for identification and assessment of emerging issues; and

  • Practice interpretation and assessment of emerging animal health issues.
Click here to sign up for notification of the next course.



Antimicrobial Resistance
Antimicrobial resistant pathogens and the role of antibiotic use in livestock production are causing increasing international concern.  This report will provide a knowledge base related to antimicrobial resistance which will assist decision makers in assigning research priorities and resources.  The report will briefly describe the following: the origins and mechanisms of antimicrobial resistance, antimicrobial use in food animals in the US, the epidemiology of antimicrobial resistance, implications of antimicrobial resistance for human and animal health, and current activities and future needs related to antimicrobial resistance.

This document is available by section, or as the entire document (367 KB)



Bovine Spongiform Encephalopathy (BSE)
BSE was first identified in Great Britain in 1986.  CEI produced several reports which address the risk of an outbreak of BSE in the United States.
  • Bibliography for Transmissible Spongiform Encephalopathies (TSE, 8/96)  Contains a comprehensive bibliography of articles up to 1996 from refereed journals and publications of government, professional associations, and international organizations. Subjects covered include TSE's, BSE, human spongiform encephalopathies, Transmissible Mink Encephalopathy (TME), scrapie, and spongiform encephalopathies in other species.
  • Bovine Spongiform Encephalopathy: Implications for the U.S. - A Follow Up 4/96  Update to the original report published in 1993 (see below). It provides an updated review of the BSE outbreak in Great Britain,  risk factors for BSE in the United States, and review of surveillance for BSE in the U.S.
  • Bovine Spongiform Encephalopathy: Implications for the U.S., 12/93  Contains a review of BSE in Great Britain, a discussion of risk factors and surveillance for BSE in the U.S., and a quantitative assessment of the possible role of nonambulatory cattle in transmissible spongiform encephalopathy in the U.S.
  • U.S. Rendering and Feed-Manufacturing Industries: Evaluation of Practices with Risk Potential for BSE, 11/92  Describes a 1991-92 survey of U.S. rendering and feed-manufacturing industries and results regarding risk of U.S. cattle contracting BSE.
  • Quantitative Risk Assessment of BSE in the U.S., 1/92  Presents a systems model of BSE epidemiology, scrapie/BSE contamination of rendered product, risk assessments at state and county levels, etc.
  • Qualitative Analysis of BSE Risk Factors in the U.S., 1/92  Discusses differences and similarities of epidemiologic risk factors for BSE between the U.S. and Great Britain, including sheep population, cattle inventories, slaughter, rendering and feed industries, etc.
  • Related Website: The Veterinary Services BSE webpage can be found at  www.aphis.usda.gov/lpa/issues/bse/bse.html


Dioxins in the Food Chain: Background
Dioxin and related chemical compounds are toxic industrial pollutants which are ubiquitous and persistent in the environment, and which accumulate in the fat tissue of animals and humans. Foods of animal origin are the primary source of human exposure to dioxins. In June 2000, the Environmental Protection Agency (EPA) completed a ten-year effort to reassess the science base associated with dioxin and closely related compounds and their associated risk to human health. The draft dioxin reassessment concludes that dioxin is a human carcinogen and that the lifetime cancer risk associated with the average person’s body burden of dioxin is between 1 in 1000 and 1 in 100. This estimate of risk is ten times higher than EPA’s previous estimate and represents a very significant public health concern.


El Nino's Potential Impact on Disease Occurrence
The effect of climate changes on infectious diseases, particularly vector-borne disease occurrence, is both an animal health and public health issue.


Escherichia coli 0157:H7
Contamination of food with the bacteria E. coli O157:H7 is an important zoonotic food safety issue. CEI has helped define the role of cattle as a source of E. coli O157:H7 in food products.
  • An Update: Escherichia coli O157:H7, 6/97  This update focuses on E. coli O157:H7 as a continuing source of illness in humans, improvements in diagnosis, testing and reporting, and reports on the prevalence of E. coli O157:H7 in the cattle population as well as post-harvest control measures. The Executive Summary mentioned below is included as an appendix in the Update.
  • Executive Summary, E. Coli O157:H7 - Issues and Ramifications, 3/94  Summarizes an 80-page report which addresses why E. coli O157:H7 is an important human pathogen, what is known about E. coli O157:H7 in cattle, production and consumption patterns for ground beef, and future directions.


Foot and Mouth Disease (FMD)
FMD, a viral disease of cloven-hooved animals (e.g. cattle, sheep, swine, deer etc.), has not been identified in North America since 1954. This virus is highly contagious and its economic consequences would be huge if it were introduced into U.S. livestock.

Foreign Animal Disease Risks Posed by Travelers
Commercial airlines carry more than 1.4 million persons across international borders every day and these travelers pose a potential risk for foreign animal disease (FAD) transmission.


Salmonella Typhimurium DT 104
Recent reports of a multiple antibiotic resistant strain of Salmonella Typhimurium DT104 in humans and animals, especially cattle, have raised emerging disease issues of international concern.

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