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June 3-7, 2006 The empirical description of biological systems has entered a rapid growth phase. The development of high throughput technologies (e. g. genomics, proteomics, large-scale phenotypic profiling, etc.) has accelerated the quest to identify and characterize “parts lists”, both at a molecular and cellular level. At the same time, advances in microscopy and imaging technologies (e.g. GFP, begun here at the FHL) are producing ever-more-detailed descriptions of the dynamics of biological processes. Together these constitute a new and pressing challenge: how to make mechanistic sense of this welter of empirical detail; that is: how to relate known properties of the parts and their interactions to the functional behaviors of the larger systems they comprise. A similar challenge faces all areas of biology; in response, a new field of computational biology has begun to emerge, one in which computer simulation models, based on the known or hypothesized empirical details and constrained by physical and chemical laws, form an essential predictive bridge between different levels of empirical description.
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