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Volume 138(3);  July 2005
Editor's Choice
1955: Kinetin Arrives. The 50th Anniversary of a New Plant Hormone
Richard Amasino
Plant Physiol. 2005 July; 138(3): 1177–1184. doi: 10.1104/pp.104.900160.
PMCID: PMC1176392
On the Inside
On The Inside
Peter V. Minorsky
Plant Physiol. 2005 July; 138(3): 1175–1176. doi: 10.1104/pp.104.900165.
PMCID: PMC1176391
Plant Databases
It's All GO for Plant Scientists
Jennifer I. Clark, Cath Brooksbank, and Jane Lomax
Plant Physiol. 2005 July; 138(3): 1268–1279. doi: 10.1104/pp.104.058529.
PMCID: PMC1176400
Plant Genome Resources at the National Center for Biotechnology Information
David L. Wheeler, Brian Smith-White, Vyacheslav Chetvernin, Sergei Resenchuk, Susan M. Dombrowski, Steven W. Pechous, Tatiana Tatusova, and James Ostell
Plant Physiol. 2005 July; 138(3): 1280–1288. doi: 10.1104/pp.104.058842.
PMCID: PMC1176401
KaPPA-View. A Web-Based Analysis Tool for Integration of Transcript and Metabolite Data on Plant Metabolic Pathway Maps
Toshiaki Tokimatsu, Nozomu Sakurai, Hideyuki Suzuki, Hiroyuki Ohta, Kazuhiko Nishitani, Tanetoshi Koyama, Toshiaki Umezawa, Norihiko Misawa, Kazuki Saito, and Daisuke Shibata
Plant Physiol. 2005 July; 138(3): 1289–1300. doi: 10.1104/pp.105.060525.
PMCID: PMC1176402
Munich Information Center for Protein Sequences Plant Genome Resources. A Framework for Integrative and Comparative Analyses
Heiko Schoof, Manuel Spannagl, Li Yang, Rebecca Ernst, Heidrun Gundlach, Dirk Haase, Georg Haberer, and Klaus F.X. Mayer
Plant Physiol. 2005 July; 138(3): 1301–1309. doi: 10.1104/pp.104.059188.
PMCID: PMC1176403
The SOL Genomics Network. A Comparative Resource for Solanaceae Biology and Beyond
Lukas A. Mueller, Teri H. Solow, Nicolas Taylor, Beth Skwarecki, Robert Buels, John Binns, Chenwei Lin, Mark H. Wright, Robert Ahrens, Ying Wang, Evan V. Herbst, Emil R. Keyder, Naama Menda, Dani Zamir, and Steven D. Tanksley
Plant Physiol. 2005 July; 138(3): 1310–1317. doi: 10.1104/pp.105.060707.
PMCID: PMC1176404
Scientific Correspondence
The Plant VirE2 Interacting Protein 1. A Molecular Link between the Agrobacterium T-Complex and the Host Cell Chromatin?
Abraham Loyter, Joseph Rosenbluh, Nehama Zakai, Jianxiong Li, Stanislav V. Kozlovsky, Tzvi Tzfira, and Vitaly Citovsky
Plant Physiol. 2005 July; 138(3): 1318–1321. doi: 10.1104/pp.105.062547.
PMCID: PMC1176405
Update on Mapman
Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses
Björn Usadel, Axel Nagel, Oliver Thimm, Henning Redestig, Oliver E. Blaesing, Natalia Palacios-Rojas, Joachim Selbig, Jan Hannemann, Maria Conceição Piques, Dirk Steinhauser, Wolf-Rüdiger Scheible, Yves Gibon, Rosa Morcuende, Daniel Weicht, Svenja Meyer, and Mark Stitt
Plant Physiol. 2005 July; 138(3): 1195–1204. doi: 10.1104/pp.105.060459.
PMCID: PMC1176394
Update on Osmotic Signaling
Osmotic Signaling in Plants. Multiple Pathways Mediated by Emerging Kinase Families
Marie Boudsocq and Christiane Laurière
Plant Physiol. 2005 July; 138(3): 1185–1194. doi: 10.1104/pp.105.061275.
PMCID: PMC1176393
Breakthrough Technologies
Engineering Cytoplasmic Male Sterility via the Chloroplast Genome by Expression of β-Ketothiolase
Oscar N. Ruiz and Henry Daniell
Plant Physiol. 2005 July; 138(3): 1232–1246. doi: 10.1104/pp.104.057729.
PMCID: PMC1176397
Laser Photoacoustic Detection Allows in Planta Detection of Nitric Oxide in Tobacco following Challenge with Avirulent and Virulent Pseudomonas syringae Pathovars
Luis A.J. Mur, I. Edi Santosa, Lucas J.J. Laarhoven, Nicholas J. Holton, Frans J.M. Harren, and Aileen R. Smith
Plant Physiol. 2005 July; 138(3): 1247–1258. doi: 10.1104/pp.104.055772.
PMCID: PMC1176398
The alc-GR System. A Modified alc Gene Switch Designed for Use in Plant Tissue Culture
Gethin R. Roberts, G. Ali Garoosi, Olga Koroleva, Masaki Ito, Patrick Laufs, David J. Leader, Mark X. Caddick, John H. Doonan, and A. Brian Tomsett
Plant Physiol. 2005 July; 138(3): 1259–1267. doi: 10.1104/pp.105.059659.
PMCID: PMC1176399
Genome Analysis
Complex Organization and Evolution of the Tomato Pericentromeric Region at the FER Gene Locus
Romain Guyot, Xudong Cheng, Yan Su, Zhukuan Cheng, Edith Schlagenhauf, Beat Keller, and Hong-Qing Ling
Plant Physiol. 2005 July; 138(3): 1205–1215. doi: 10.1104/pp.104.058099.
PMCID: PMC1176395
Serial Analysis of Gene Expression Study of a Hybrid Rice Strain (LYP9) and Its Parental Cultivars
JingYue Bao, Sanggyu Lee, Chen Chen, XiuQing Zhang, Yu Zhang, SiQi Liu, Terry Clark, Jian Wang, MengLiang Cao, HuanMing Yang, San Ming Wang, and Jun Yu
Plant Physiol. 2005 July; 138(3): 1216–1231. doi: 10.1104/pp.105.060988.
PMCID: PMC1176396
Research Articles
Biochemical Processes and Macromolecular Structures
Surrogate Splicing for Functional Analysis of Sesquiterpene Synthase Genes
Shuiqin Wu, Mark A. Schoenbeck, Bryan T. Greenhagen, Shunji Takahashi, Sungbeom Lee, Robert M. Coates, and Joseph Chappell
Plant Physiol. 2005 July; 138(3): 1322–1333. doi: 10.1104/pp.105.059386.
PMCID: PMC1176406
Purification and Characterization of Adenosine Diphosphate Glucose Pyrophosphorylase from Maize/Potato Mosaics
Susan K. Boehlein, Aileen K. Sewell, Joanna Cross, Jon D. Stewart, and L. Curtis Hannah
Plant Physiol. 2005 July; 138(3): 1552–1562. doi: 10.1104/pp.105.060699.
PMCID: PMC1176425
Molecular Cloning of a β-Galactosidase from Radish That Specifically Hydrolyzes β-(1→3)- and β-(1→6)-Galactosyl Residues of Arabinogalactan Protein
Toshihisa Kotake, Soraya Dina, Tomoyuki Konishi, Satoshi Kaneko, Kiyohiko Igarashi, Masahiro Samejima, Yoko Watanabe, Kazumasa Kimura, and Yoichi Tsumuraya
Plant Physiol. 2005 July; 138(3): 1563–1576. doi: 10.1104/pp.105.062562.
PMCID: PMC1176426
Bioenergetics and Photosynthesis
Involvement of Phycobilisome Diffusion in Energy Quenching in Cyanobacteria
Sarah Joshua, Shaun Bailey, Nicholas H. Mann, and Conrad W. Mullineaux
Plant Physiol. 2005 July; 138(3): 1577–1585. doi: 10.1104/pp.105.061168.
PMCID: PMC1176427
FesM, a Membrane Iron-Sulfur Protein, Is Required for Cyclic Electron Flow around Photosystem I and Photoheterotrophic Growth of the Cyanobacterium Synechococcus sp. PCC 7002
Dongyi Xu, Xianwei Liu, Jiao Zhao, and Jindong Zhao
Plant Physiol. 2005 July; 138(3): 1586–1595. doi: 10.1104/pp.105.061549.
PMCID: PMC1176428
In Vivo Respiratory Metabolism of Illuminated Leaves
Guillaume Tcherkez, Gabriel Cornic, Richard Bligny, Elizabeth Gout, and Jaleh Ghashghaie
Plant Physiol. 2005 July; 138(3): 1596–1606. doi: 10.1104/pp.105.062141.
PMCID: PMC1176429
Cell Biology and Signal Transduction
Pectin Methylesterase, a Regulator of Pollen Tube Growth
Maurice Bosch, Alice Y. Cheung, and Peter K. Hepler
Plant Physiol. 2005 July; 138(3): 1334–1346. doi: 10.1104/pp.105.059865.
PMCID: PMC1176407
A Gibberellin-Regulated Calcineurin B in Rice Localizes to the Tonoplast and Is Implicated in Vacuole Function
Yong-sic Hwang, Paul C. Bethke, Yong Hwa Cheong, Hur-Song Chang, Tong Zhu, and Russell L. Jones
Plant Physiol. 2005 July; 138(3): 1347–1358. doi: 10.1104/pp.105.062703.
PMCID: PMC1176408
Molecular Characterization of Maize Acetylcholinesterase. A Novel Enzyme Family in the Plant Kingdom
Yoshimasa Sagane, Tomoyuki Nakagawa, Kosuke Yamamoto, Soichi Michikawa, Suguru Oguri, and Yoshie S. Momonoki
Plant Physiol. 2005 July; 138(3): 1359–1371. doi: 10.1104/pp.105.062927.
PMCID: PMC1176409
Phytic Acid Synthesis and Vacuolar Accumulation in Suspension-Cultured Cells of Catharanthus roseus Induced by High Concentration of Inorganic Phosphate and Cations
Naoto Mitsuhashi, Miwa Ohnishi, Yoko Sekiguchi, Yong-Uk Kwon, Young-Tae Chang, Sung-Kee Chung, Yoshinori Inoue, Robert J. Reid, Hitoshi Yagisawa, and Tetsuro Mimura
Plant Physiol. 2005 July; 138(3): 1607–1614. doi: 10.1104/pp.105.060269.
PMCID: PMC1176430
Isolation of a Protein Interacting with Vfphot1a in Guard Cells of Vicia faba
Takashi Emi, Toshinori Kinoshita, Koji Sakamoto, Yoshinobu Mineyuki, and Ken-ichiro Shimazaki
Plant Physiol. 2005 July; 138(3): 1615–1626. doi: 10.1104/pp.104.052639.
PMCID: PMC1176431
Atypical Regulation of a Green Lineage-Specific B-Type Cyclin-Dependent Kinase
Florence Corellou, Alain Camasses, Laetitia Ligat, Gérard Peaucellier, and François-Yves Bouget
Plant Physiol. 2005 July; 138(3): 1627–1636. doi: 10.1104/pp.105.059626.
PMCID: PMC1176432
The roothairless1 Gene of Maize Encodes a Homolog of sec3, Which Is Involved in Polar Exocytosis
Tsui-Jung Wen, Frank Hochholdinger, Michaela Sauer, Wesley Bruce, and Patrick S. Schnable
Plant Physiol. 2005 July; 138(3): 1637–1643. doi: 10.1104/pp.105.062174.
PMCID: PMC1176433
A Sphingolipid Elicitor-Inducible Mitogen-Activated Protein Kinase Is Regulated by the Small GTPase OsRac1 and Heterotrimeric G-Protein in Rice
Damien Lieberherr, Nguyen Phuong Thao, Ayako Nakashima, Kenji Umemura, Tsutomu Kawasaki, and Ko Shimamoto
Plant Physiol. 2005 July; 138(3): 1644–1652. doi: 10.1104/pp.104.057414.
PMCID: PMC1176434
Development and Hormone Action
Antisense Suppression of Deoxyhypusine Synthase in Tomato Delays Fruit Softening and Alters Growth and Development
Tzann-Wei Wang, Chun-Guang Zhang, Wendy Wu, Linda M. Nowack, Ewa Madey, and John E. Thompson
Plant Physiol. 2005 July; 138(3): 1372–1382. doi: 10.1104/pp.105.060194.
PMCID: PMC1176410
A RING Domain Gene Is Expressed in Different Cell Types of Leaf Trace, Stem, and Juvenile Bundles in the Stem Vascular System of Zinnia
Preeti Dahiya, Dimitra Milioni, Brian Wells, Nicola Stacey, Keith Roberts, and Maureen C. McCann
Plant Physiol. 2005 July; 138(3): 1383–1395. doi: 10.1104/pp.104.057901.
PMCID: PMC1176411
CORKSCREW1 Defines a Novel Mechanism of Domain Specification in the Maize Shoot
Debbie L. Alexander, E. Anne Mellor, and Jane A. Langdale
Plant Physiol. 2005 July; 138(3): 1396–1408. doi: 10.1104/pp.105.063909.
PMCID: PMC1176412
Isolation, Characterization, and Cloning of α-l-Arabinofuranosidase Expressed during Fruit Ripening of Japanese Pear
Akira Tateishi, Hitoshi Mori, Junya Watari, Kenji Nagashima, Shohei Yamaki, and Hiroaki Inoue
Plant Physiol. 2005 July; 138(3): 1653–1664. doi: 10.1104/pp.104.056655.
PMCID: PMC1176435
Auxin Dynamics after Decapitation Are Not Correlated with the Initial Growth of Axillary Buds
Suzanne E. Morris, Marjolein C.H. Cox, John J. Ross, Santi Krisantini, and Christine A. Beveridge
Plant Physiol. 2005 July; 138(3): 1665–1672. doi: 10.1104/pp.104.058743.
PMCID: PMC1176436
Environmental Stress and Adaptation
The Histidine Kinase Hik34 Is Involved in Thermotolerance by Regulating the Expression of Heat Shock Genes in Synechocystis
Iwane Suzuki, Yu Kanesaki, Hidenori Hayashi, John J. Hall, William J. Simon, Antoni R. Slabas, and Norio Murata
Plant Physiol. 2005 July; 138(3): 1409–1421. doi: 10.1104/pp.104.059097.
PMCID: PMC1176413
Tocopherols Protect Synechocystis sp. Strain PCC 6803 from Lipid Peroxidation
Hiroshi Maeda, Yumiko Sakuragi, Donald A. Bryant, and Dean DellaPenna
Plant Physiol. 2005 July; 138(3): 1422–1435. doi: 10.1104/pp.105.061135.
PMCID: PMC1176414
Functional Analysis of Arabidopsis Ethylene-Responsive Element Binding Protein Conferring Resistance to Bax and Abiotic Stress-Induced Plant Cell Death
Taro Ogawa, Ling Pan, Maki Kawai-Yamada, Li-Hua Yu, Saburo Yamamura, Tomotsugu Koyama, Sakihito Kitajima, Masaru Ohme-Takagi, Fumihiko Sato, and Hirofumi Uchimiya
Plant Physiol. 2005 July; 138(3): 1436–1445. doi: 10.1104/pp.105.063586.
PMCID: PMC1176415
Increasing Tolerance to Ozone by Elevating Foliar Ascorbic Acid Confers Greater Protection against Ozone Than Increasing Avoidance
Zhong Chen and Daniel R. Gallie
Plant Physiol. 2005 July; 138(3): 1673–1689. doi: 10.1104/pp.105.062000.
PMCID: PMC1176437
Genetics, Genomics, and Molecular Evolution
Interacting Proteins and Differences in Nuclear Transport Reveal Specific Functions for the NAP1 Family Proteins in Plants
Aiwu Dong, Ziqiang Liu, Yan Zhu, Fang Yu, Ziyu Li, Kaiming Cao, and Wen-Hui Shen
Plant Physiol. 2005 July; 138(3): 1446–1456. doi: 10.1104/pp.105.060509.
PMCID: PMC1176416
Compilation of mRNA Polyadenylation Signals in Arabidopsis Revealed a New Signal Element and Potential Secondary Structures
Johnny C. Loke, Eric A. Stahlberg, David G. Strenski, Brian J. Haas, Paul Chris Wood, and Qingshun Quinn Li
Plant Physiol. 2005 July; 138(3): 1457–1468. doi: 10.1104/pp.105.060541.
PMCID: PMC1176417
Comparison of Tuber Proteomes of Potato Varieties, Landraces, and Genetically Modified Lines
Satu J. Lehesranta, Howard V. Davies, Louise V.T. Shepherd, Naoise Nunan, Jim W. McNicol, Seppo Auriola, Kaisa M. Koistinen, Soile Suomalainen, Harri I. Kokko, and Sirpa O. Kärenlampi
Plant Physiol. 2005 July; 138(3): 1690–1699. doi: 10.1104/pp.105.060152.
PMCID: PMC1176438
The Maize Root Transcriptome by Serial Analysis of Gene Expression
V. Poroyko, L.G. Hejlek, W.G. Spollen, G.K. Springer, H.T. Nguyen, R.E. Sharp, and H.J. Bohnert
Plant Physiol. 2005 July; 138(3): 1700–1710. doi: 10.1104/pp.104.057638.
PMCID: PMC1176439
Origin and Evolution of Kinesin-Like Calmodulin-Binding Protein
Salah E. Abdel-Ghany, Irene S. Day, Mark P. Simmons, Paul Kugrens, and Anireddy S.N. Reddy
Plant Physiol. 2005 July; 138(3): 1711–1722. doi: 10.1104/pp.105.060913.
PMCID: PMC1176440
Mutational Decay and Age of Chloroplast and Mitochondrial Genomes Transferred Recently to Angiosperm Nuclear Chromosomes
Chun Y. Huang, Nicole Grünheit, Nahal Ahmadinejad, Jeremy N. Timmis, and William Martin
Plant Physiol. 2005 July; 138(3): 1723–1733. doi: 10.1104/pp.105.060327.
PMCID: PMC1176441
Profile and Analysis of Gene Expression Changes during Early Development in Germinating Spores of Ceratopteris richardii
Mari L. Salmi, Thomas J. Bushart, Stephen C. Stout, and Stanley J. Roux
Plant Physiol. 2005 July; 138(3): 1734–1745. doi: 10.1104/pp.105.062851.
PMCID: PMC1176442
Characterization of Heterologous Multigene Operons in Transgenic Chloroplasts. Transcription, Processing, and Translation
Tania Quesada-Vargas, Oscar N. Ruiz, and Henry Daniell
Plant Physiol. 2005 July; 138(3): 1746–1762. doi: 10.1104/pp.105.063040.
PMCID: PMC1176443
Plants Interacting with Other Organisms
Localized Hormone Fluxes and Early Haustorium Development in the Hemiparasitic Plant Triphysaria versicolor
Alexey A. Tomilov, Natalia B. Tomilova, Ibrahim Abdallah, and John I. Yoder
Plant Physiol. 2005 July; 138(3): 1469–1480. doi: 10.1104/pp.104.057836.
PMCID: PMC1176418
Systemic Acquired Tolerance to Virulent Bacterial Pathogens in Tomato
Anna Block, Eric Schmelz, Phillip J. O'Donnell, Jeffrey B. Jones, and Harry J. Klee
Plant Physiol. 2005 July; 138(3): 1481–1490. doi: 10.1104/pp.105.059246.
PMCID: PMC1176419
Differences in Cell Death Induction by Phytophthora Elicitins Are Determined by Signal Components Downstream of MAP Kinase Kinase in Different Species of Nicotiana and Cultivars of Brassica rapa and Raphanus sativus
Daigo Takemoto, Adrienne R. Hardham, and David A. Jones
Plant Physiol. 2005 July; 138(3): 1491–1504. doi: 10.1104/pp.104.058388.
PMCID: PMC1176420
Vitamin B1 Functions as an Activator of Plant Disease Resistance
Il-Pyung Ahn, Soonok Kim, and Yong-Hwan Lee
Plant Physiol. 2005 July; 138(3): 1505–1515. doi: 10.1104/pp.104.058693.
PMCID: PMC1176421
Fatty Acid Hydroperoxides and H2O2 in the Execution of Hypersensitive Cell Death in Tobacco Leaves
Jean-Luc Montillet, Sangpen Chamnongpol, Christine Rustérucci, James Dat, Brigitte van de Cotte, Jean-Pierre Agnel, Christine Battesti, Dirk Inzé, Frank Van Breusegem, and Christian Triantaphylidès
Plant Physiol. 2005 July; 138(3): 1516–1526. doi: 10.1104/pp.105.059907.
PMCID: PMC1176422
Specificity in Ecological Interactions. Attack from the Same Lepidopteran Herbivore Results in Species-Specific Transcriptional Responses in Two Solanaceous Host Plants
Dominik D. Schmidt, Claudia Voelckel, Markus Hartl, Silvia Schmidt, and Ian T. Baldwin
Plant Physiol. 2005 July; 138(3): 1763–1773. doi: 10.1104/pp.105.061192.
PMCID: PMC1176444
Dissecting Defense-Related and Developmental Transcriptional Responses of Maize during Ustilago maydis Infection and Subsequent Tumor Formation
Christoph W. Basse
Plant Physiol. 2005 July; 138(3): 1774–1784. doi: 10.1104/pp.105.061200.
PMCID: PMC1176445
A Second Kazal-Like Protease Inhibitor from Phytophthora infestans Inhibits and Interacts with the Apoplastic Pathogenesis-Related Protease P69B of Tomato
Miaoying Tian, Brett Benedetti, and Sophien Kamoun
Plant Physiol. 2005 July; 138(3): 1785–1793. doi: 10.1104/pp.105.061226.
PMCID: PMC1176446
Whole Plant and Ecophysiology
Thermodynamic Battle for Photosynthate Acquisition between Sieve Tubes and Adjoining Parenchyma in Transport Phloem
Jens B. Hafke, Jan-Kees van Amerongen, Frits Kelling, Alexandra C.U. Furch, Frank Gaupels, and Aart J.E. van Bel
Plant Physiol. 2005 July; 138(3): 1527–1537. doi: 10.1104/pp.104.058511.
PMCID: PMC1176423
Water Uptake and Distribution in Germinating Tobacco Seeds Investigated in Vivo by Nuclear Magnetic Resonance Imaging
Bertram Manz, Kerstin Müller, Birgit Kucera, Frank Volke, and Gerhard Leubner-Metzger
Plant Physiol. 2005 July; 138(3): 1538–1551. doi: 10.1104/pp.105.061663.
PMCID: PMC1176424
Flowering of the Grass Lolium perenne. Effects of Vernalization and Long Days on Gibberellin Biosynthesis and Signaling
Colleen P. MacMillan, Cheryl A. Blundell, and Rod W. King
Plant Physiol. 2005 July; 138(3): 1794–1806. doi: 10.1104/pp.105.062190.
PMCID: PMC1176447
Correction
CORRECTION
Plant Physiol. 2005 July; 138(3): 1807. doi: 10.1104/pp.104.900164.
PMCID: PMC1176448
Corrects: Ivan Baxter, et al. Genomic Comparison of P-Type ATPase Ion Pumps in Arabidopsis and Rice. Plant Physiol. 2003 June; 132(2): 618–628.
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