| | This journal provides immediate access to some articles. Arabidopsis Special Issue On the Inside On The Inside Peter V. Minorsky PMCID: PMC1150376 Editorials Looking to the Future of Plant Biology Research Natasha Raikhel PMCID: PMC1150363 ASPB's Response to the NIH's Public Access Policy Natasha V. Raikhel, Donald Ort, and Richard Jorgensen PMCID: PMC1150364 Scientific Correspondence Maturation of the Ground Tissue of the Root Is Regulated by Gibberellin and SCARECROW and Requires SHORT-ROOT Alice J. Paquette and Philip N. Benfey PMCID: PMC1150384 Update on Arabidopsis Proteomics Update on Proteomics in Arabidopsis. Where Do We Go From Here? Scott C. Peck PMCID: PMC1150380 Update on Chemmine ChemMine. A Compound Mining Database for Chemical Genomics Thomas Girke, Li-Chang Cheng, and Natasha Raikhel PMCID: PMC1150377 Update on Evolutionary and Ecological Genomics of Arabidopsis Evolutionary and Ecological Genomics of Arabidopsis Kentaro K. Shimizu and Michael D. Purugganan PMCID: PMC1150378 Update on High-Throughput RNA Isolation Technologies High-Throughput RNA Isolation Technologies. New Tools for High-Resolution Gene Expression Profiling in Plant Systems Ji-Young Lee, Mitchell Levesque, and Philip N. Benfey PMCID: PMC1150379 Vision Statement for Plant Physiology Genetic Networks Steven P. Briggs and Tatjana Singer PMCID: PMC1150365 Comparative Plant Genomics. Frontiers and Prospects Ana L. Caicedo and Michael D. Purugganan PMCID: PMC1150366 Developmental Networks Philip N. Benfey PMCID: PMC1150367 Systems Biology for the Virtual Plant Rodrigo A. Gutiérrez, Dennis E. Shasha, and Gloria M. Coruzzi PMCID: PMC1150368 Genetically Encoded FRET Sensors for Visualizing Metabolites with Subcellular Resolution in Living Cells Loren L. Looger, Sylvie Lalonde, and Wolf B. Frommer PMCID: PMC1150369 Dude, Where's My Phenotype? Dealing with Redundancy in Signaling Networks Sean Cutler and Peter McCourt PMCID: PMC1150370 Prospects and Challenges in Proteomics Paul Bertone and Michael Snyder PMCID: PMC1150371 Adding Precision Tools to the Plant Biologists' Toolbox with Chemical Genomics Natasha Raikhel and Michael Pirrung PMCID: PMC1150372 Small RNAs and Arabidopsis. A Fast Forward Look James C. Carrington PMCID: PMC1150373 Natural Variation in Arabidopsis. How Do We Find the Causal Genes? Detlef Weigel and Magnus Nordborg PMCID: PMC1150374 Bioinformatics. Current Limitations and Insights for the Future Seung Yon Rhee PMCID: PMC1150375 Breakthrough Technologies Immunopurification of Polyribosomal Complexes of Arabidopsis for Global Analysis of Gene Expression María Eugenia Zanetti, Ing-Feng Chang, Fangcheng Gong, David W. Galbraith, and Julia Bailey-Serres PMCID: PMC1150383 Genome Analysis Genome Organization of More Than 300 Defensin-Like Genes in Arabidopsis Kevin A.T. Silverstein, Michelle A. Graham, Timothy D. Paape, and Kathryn A. VandenBosch PMCID: PMC1150381 Phylogenomic Analysis of the Receptor-Like Proteins of Rice and Arabidopsis Lillian K. Fritz-Laylin, Nandini Krishnamurthy, Mahmut Tör, Kimmen V. Sjölander, and Jonathan D.G. Jones PMCID: PMC1150382 Research Articles Biochemical Processes and Macromolecular Structures The Arabidopsis IspH Homolog Is Involved in the Plastid Nonmevalonate Pathway of Isoprenoid Biosynthesis Ming-Hsiun Hsieh and Howard M. Goodman PMCID: PMC1150385 Two Microtubule-Associated Proteins of the Arabidopsis MAP65 Family Function Differently on Microtubules Tonglin Mao, Lifeng Jin, Hua Li, Bo Liu, and Ming Yuan PMCID: PMC1150386 Mutations Affecting Starch Synthase III in Arabidopsis Alter Leaf Starch Structure and Increase the Rate of Starch Synthesis Xiaoli Zhang, Alan M. Myers, and Martha G. James PMCID: PMC1150387 Tripeptidyl Peptidase II. An Oligomeric Protease Complex from Arabidopsis Adam J. Book, Peizhen Yang, Mark Scalf, Lloyd M. Smith, and Richard D. Vierstra PMCID: PMC1150419 Structural Complexity, Differential Response to Infection, and Tissue Specificity of Indolic and Phenylpropanoid Secondary Metabolism in Arabidopsis Roots Paweł Bednarek, Bernd Schneider, Aleš Svatoš, Neil J. Oldham, and Klaus Hahlbrock PMCID: PMC1150420 Cloning and Functional Characterization of a Formin-Like Protein (AtFH8) from Arabidopsis Kexi Yi, Chunqing Guo, Ding Chen, Binbin Zhao, Bin Yang, and Haiyun Ren PMCID: PMC1150421 Cell Biology and Signal Transduction Analysis of a Sugar Response Mutant of Arabidopsis Identified a Novel B3 Domain Protein That Functions as an Active Transcriptional Repressor Hironaka Tsukagoshi, Takanori Saijo, Daisuke Shibata, Atsushi Morikami, and Kenzo Nakamura PMCID: PMC1150388 Mutations in the Arabidopsis Phosphoinositide Phosphatase Gene SAC9 Lead to Overaccumulation of PtdIns(4,5)P2 and Constitutive Expression of the Stress-Response Pathway Mary Elizabeth Williams, Javad Torabinejad, Evan Cohick, Katherine Parker, Elizabeth J. Drake, James E. Thompson, Michelle Hortter, and Daryll B. DeWald PMCID: PMC1150389 Loss-of-Function Mutations of ROOT HAIR DEFECTIVE3 Suppress Root Waving, Skewing, and Epidermal Cell File Rotation in Arabidopsis Christen Y.L. Yuen, John C. Sedbrook, Robyn M. Perrin, Kathleen L. Carroll, and Patrick H. Masson PMCID: PMC1150390 A Molecular-Genetic Study of the Arabidopsis Toc75 Gene Family Amy Baldwin, Anthony Wardle, Ramesh Patel, Penny Dudley, Soon Ki Park, David Twell, Kentaro Inoue, and Paul Jarvis PMCID: PMC1150391 The Arabidopsis Transcription Factor MYB12 Is a Flavonol-Specific Regulator of Phenylpropanoid Biosynthesis Frank Mehrtens, Harald Kranz, Pawel Bednarek, and Bernd Weisshaar PMCID: PMC1150422 Light-Dark Changes in Cytosolic Nitrate Pools Depend on Nitrate Reductase Activity in Arabidopsis Leaf Cells Sarah J. Cookson, Lorraine E. Williams, and Anthony J. Miller PMCID: PMC1150423 Development and Hormone Action Genome-Wide Analysis of Gene Expression Profiles Associated with Cell Cycle Transitions in Growing Organs of Arabidopsis Gerrit T.S. Beemster, Lieven De Veylder, Steven Vercruysse, Gerrit West, Debbie Rombaut, Paul Van Hummelen, Arnaud Galichet, Wilhelm Gruissem, Dirk Inzé, and Marnik Vuylsteke PMCID: PMC1150392 Gene Family Analysis of the Arabidopsis Pollen Transcriptome Reveals Biological Implications for Cell Growth, Division Control, and Gene Expression Regulation Cristina Pina, Francisco Pinto, José A. Feijó, and Jörg D. Becker PMCID: PMC1150393 Identification of cis-Elements That Regulate Gene Expression during Initiation of Axillary Bud Outgrowth in Arabidopsis Kiyoshi Tatematsu, Sally Ward, Ottoline Leyser, Yuji Kamiya, and Eiji Nambara PMCID: PMC1150394 Arabidopsis thickvein Mutation Affects Vein Thickness and Organ Vascularization, and Resides in a Provascular Cell-Specific Spermine Synthase Involved in Vein Definition and in Polar Auxin Transport Nicole K. Clay and Timothy Nelson PMCID: PMC1150395 Plantacyanin Plays a Role in Reproduction in Arabidopsis Juan Dong, Sun Tae Kim, and Elizabeth M. Lord PMCID: PMC1150396 Patterns of Protein Oxidation in Arabidopsis Seeds and during Germination Claudette Job, Loïc Rajjou, Yoann Lovigny, Maya Belghazi, and Dominique Job PMCID: PMC1150397 The Xylem and Phloem Transcriptomes from Secondary Tissues of the Arabidopsis Root-Hypocotyl Chengsong Zhao, Johanna C. Craig, H. Earl Petzold, Allan W. Dickerman, and Eric P. Beers PMCID: PMC1150398 DRP1A Is Responsible for Vascular Continuity Synergistically Working with VAN3 in Arabidopsis Shinichiro Sawa, Koji Koizumi, Satoshi Naramoto, Taku Demura, Takashi Ueda, Akihiko Nakano, and Hiroo Fukuda PMCID: PMC1150399 The Involvement of Gibberellin 20-Oxidase Genes in Phytochrome-Regulated Petiole Elongation of Arabidopsis Tamotsu Hisamatsu, Rod W. King, Chris A. Helliwell, and Masaji Koshioka PMCID: PMC1150424 Brassinosteroid Homeostasis in Arabidopsis Is Ensured by Feedback Expressions of Multiple Genes Involved in Its Metabolism Kiwamu Tanaka, Tadao Asami, Shigeo Yoshida, Yasushi Nakamura, Tomoaki Matsuo, and Shigehisa Okamoto PMCID: PMC1150425 Environmental Stress and Adaptation AtPDR12 Contributes to Lead Resistance in Arabidopsis Miyoung Lee, Kiyoul Lee, Joohyun Lee, Eun Woon Noh, and Youngsook Lee PMCID: PMC1150400 Starch-Related α-Glucan/Water Dikinase Is Involved in the Cold-Induced Development of Freezing Tolerance in Arabidopsis Ryoichi Yano, Masanobu Nakamura, Tadakatsu Yoneyama, and Ikuo Nishida PMCID: PMC1150401 Interaction between Phosphate-Starvation, Sugar, and Cytokinin Signaling in Arabidopsis and the Roles of Cytokinin Receptors CRE1/AHK4 and AHK3 José Manuel Franco-Zorrilla, Ana Carmen Martín, Antonio Leyva, and Javier Paz-Ares PMCID: PMC1150402 Gene Expression and Microscopic Analysis of Arabidopsis Exposed to Chloroacetanilide Herbicides and Explosive Compounds. A Phytoremediation Approach Melissa P. Mezzari, Katherine Walters, Marcela Jelínkova, Ming-Che Shih, Craig L. Just, and Jerald L. Schnoor PMCID: PMC1150403 Roles of Arabidopsis AtREV1 and AtREV7 in Translesion Synthesis Shinya Takahashi, Ayako Sakamoto, Shusei Sato, Tomohiko Kato, Satoshi Tabata, and Atsushi Tanaka PMCID: PMC1150404 Heat Stress Phenotypes of Arabidopsis Mutants Implicate Multiple Signaling Pathways in the Acquisition of Thermotolerance Jane Larkindale, Jennifer D. Hall, Marc R. Knight, and Elizabeth Vierling PMCID: PMC1150405 Characterization of Markers to Determine the Extent and Variability of Leaf Senescence in Arabidopsis. A Metabolic Profiling Approach Céline Diaz, Sarah Purdy, Aurélie Christ, Jean-Francois Morot-Gaudry, Astrid Wingler, and Céline Masclaux-Daubresse PMCID: PMC1150406 The Arabidopsis Plastidic Methionine Sulfoxide Reductase B Proteins. Sequence and Activity Characteristics, Comparison of the Expression with Plastidic Methionine Sulfoxide Reductase A, and Induction by Photooxidative Stress Christina Vieira Dos Santos, Stéphan Cuiné, Nicolas Rouhier, and Pascal Rey PMCID: PMC1150407 Genetics, Genomics, and Molecular Evolution Local Coexpression Domains of Two to Four Genes in the Genome of Arabidopsis Xin-Ying Ren, Mark W.E.J. Fiers, Willem J. Stiekema, and Jan-Peter Nap PMCID: PMC1150408 Computational Identification of 69 Retroposons in Arabidopsis Yujun Zhang, Yongrui Wu, Yilei Liu, and Bin Han PMCID: PMC1150409 Two Homologous ATP-Binding Cassette Transporter Proteins, AtMDR1 and AtPGP1, Regulate Arabidopsis Photomorphogenesis and Root Development by Mediating Polar Auxin Transport Rongcheng Lin and Haiyang Wang PMCID: PMC1150410 The AtRAD51C Gene Is Required for Normal Meiotic Chromosome Synapsis and Double-Stranded Break Repair in Arabidopsis Wuxing Li, Xiaohui Yang, Zhenguo Lin, Ljudmilla Timofejeva, Rong Xiao, Christopher A. Makaroff, and Hong Ma PMCID: PMC1150411 Genome-Wide Identification of Genes Expressed in Arabidopsis Pistils Specifically along the Path of Pollen Tube Growth Chih-Wei Tung, Kathleen G. Dwyer, Mikhail E. Nasrallah, and June B. Nasrallah PMCID: PMC1150412 Rapid Array Mapping of Circadian Clock and Developmental Mutations in Arabidopsis Samuel P. Hazen, Justin O. Borevitz, Frank G. Harmon, Jose L. Pruneda-Paz, Thomas F. Schultz, Marcelo J. Yanovsky, Sarah J. Liljegren, Joseph R. Ecker, and Steve A. Kay PMCID: PMC1150413 New Arabidopsis Recombinant Inbred Lines (Landsberg erecta × Nossen) Reveal Natural Variation in Phytochrome-Mediated Responses Teresa M. Alconada Magliano, Javier F. Botto, A. Veronica Godoy, V. Vaughan Symonds, Alan M. Lloyd, and Jorge J. Casal PMCID: PMC1150426 An Expression and Bioinformatics Analysis of the Arabidopsis Serine Carboxypeptidase-Like Gene Family Christopher M. Fraser, Lance W. Rider, and Clint Chapple PMCID: PMC1150427 Plants Interacting with Other Organisms Root Border-Like Cells of Arabidopsis. Microscopical Characterization and Role in the Interaction with Rhizobacteria Maïté Vicré, Catherine Santaella, Sandrine Blanchet, Aurélien Gateau, and Azeddine Driouich PMCID: PMC1150414 Electrophysiological Characterization of the Arabidopsis avrRpt2-Specific Hypersensitive Response in the Absence of Other Bacterial Signals Sharon M. Pike, Xue-Cheng Zhang, and Walter Gassmann PMCID: PMC1150415 Regulation of Plant Disease Resistance, Stress Responses, Cell Death, and Ethylene Signaling in Arabidopsis by the EDR1 Protein Kinase Dingzhong Tang, Katy M. Christiansen, and Roger W. Innes PMCID: PMC1150416 Loss-of-Function Mutations in Chitin Responsive Genes Show Increased Susceptibility to the Powdery Mildew Pathogen Erysiphe cichoracearum Katrina Ramonell, Marta Berrocal-Lobo, Serry Koh, Jinrong Wan, Herb Edwards, Gary Stacey, and Shauna Somerville PMCID: PMC1150417 The Role of Salicylic Acid in the Induction of Cell Death in Arabidopsis acd11 Peter Brodersen, Frederikke Gro Malinovsky, Kian Hématy, Mari-Anne Newman, and John Mundy PMCID: PMC1150418 Major Signaling Pathways Modulate Arabidopsis Glucosinolate Accumulation and Response to Both Phloem-Feeding and Chewing Insects Inga Mewis, Heidi M. Appel, Amanda Hom, Ramesh Raina, and Jack C. Schultz PMCID: PMC1150428 Whole Plant and Ecophysiology Role of FRIGIDA and FLOWERING LOCUS C in Determining Variation in Flowering Time of Arabidopsis Chikako Shindo, Maria Jose Aranzana, Clare Lister, Catherine Baxter, Colin Nicholls, Magnus Nordborg, and Caroline Dean PMCID: PMC1150429 Correction Plant Physiol. 2005 June; 138(2): 1174. doi: 10.1104/pp.104.900163.PMCID: PMC1150430 Corrects: Stephane Lefebvre, et al. Increased Sedoheptulose-1,7-Bisphosphatase Activity in Transgenic Tobacco Plants Stimulates Photosynthesis and Growth from an Early Stage in Development. Plant Physiol. 2005 May; 138(1): 451–460. |
