| | Education The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function Marco Punta and Yanay Ofran PMCID: PMC2518264 Support Vector Machines and Kernels for Computational Biology Asa Ben-Hur, Cheng Soon Ong, Sören Sonnenburg, Bernhard Schölkopf, and Gunnar Rätsch PMCID: PMC2547983 Review Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web Duncan Hull, Steve R. Pettifer, and Douglas B. Kell PMCID: PMC2568856 Research Articles Discarding Functional Residues from the Substitution Table Improves Predictions of Active Sites within Three-Dimensional Structures Sungsam Gong and Tom L. Blundell PMCID: PMC2527532 A Learning Theory for Reward-Modulated Spike-Timing-Dependent
Plasticity with Application to Biofeedback Robert Legenstein, Dejan Pecevski, and Wolfgang Maass PMCID: PMC2543108 Removal of AU Bias from Microarray mRNA Expression Data Enhances Computational Identification of Active MicroRNAs Ran Elkon and Reuven Agami PMCID: PMC2533120 Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes Yang Shen, Ioannis Ch. Paschalidis, Pirooz Vakili, and Sandor Vajda PMCID: PMC2538569 Nonidentifiability of the Source of Intrinsic Noise in Gene
Expression from Single-Burst Data Piers J. Ingram, Michael P. H. Stumpf, and Jaroslav Stark PMCID: PMC2538572 Analysis of Gene Regulatory Networks in the Mammalian Circadian Rhythm Jun Yan, Haifang Wang, Yuting Liu, and Chunxuan Shao PMCID: PMC2543109 The Inactivation Principle: Mathematical Solutions Minimizing the
Absolute Work and Biological Implications for the Planning of Arm Movements Bastien Berret, Christian Darlot, Frédéric Jean, Thierry Pozzo, Charalambos Papaxanthis, and Jean Paul Gauthier PMCID: PMC2561290 Impact of Limited Solvent Capacity on Metabolic Rate, Enzyme Activities, and Metabolite Concentrations of S. cerevisiae Glycolysis Alexei Vazquez, Marcio A. de Menezes, Albert-László Barabási, and Zoltan N. Oltvai PMCID: PMC2533405 Noise during Rest Enables the Exploration of the Brain's Dynamic Repertoire Anandamohan Ghosh, Y. Rho, A. R. McIntosh, R. Kötter, and V. K. Jirsa PMCID: PMC2551736 Dose-to-Duration Encoding and Signaling beyond Saturation in Intracellular Signaling Networks Marcelo Behar, Nan Hao, Henrik G. Dohlman, and Timothy C. Elston PMCID: PMC2543107 Biophysical Basis for Three Distinct Dynamical Mechanisms of Action
Potential Initiation Steven A. Prescott, Yves De Koninck, and Terrence J. Sejnowski PMCID: PMC2551735 Aggregation Propensity of the Human Proteome Elodie Monsellier, Matteo Ramazzotti, Niccolò Taddei, and Fabrizio Chiti PMCID: PMC2557143 Fusion and Fission of Genes Define a Metric between Fungal Genomes Pascal Durrens, Macha Nikolski, and David Sherman PMCID: PMC2557144 ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome Gary Hon, Bing Ren, and Wei Wang PMCID: PMC2556089 An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and
Nonuniform Evolution Elhanan Borenstein and David C. Krakauer PMCID: PMC2562988 Organization of Physical Interactomes as Uncovered by Network Schemas Eric Banks, Elena Nabieva, Bernard Chazelle, and Mona Singh PMCID: PMC2561054 Cell Groups Reveal Structure of Stimulus Space Carina Curto and Vladimir Itskov PMCID: PMC2565599 Flux-Based Transport Enhancement as a Plausible Unifying Mechanism for Auxin Transport in Meristem Development Szymon Stoma, Mikael Lucas, Jérôme Chopard, Marianne Schaedel, Jan Traas, and Christophe Godin PMCID: PMC2565506 The Effects of NR2 Subunit-Dependent NMDA Receptor Kinetics on Synaptic Transmission and CaMKII Activation David M. Santucci and Sridhar Raghavachari PMCID: PMC2563690 Genome-Scale Reconstruction and Analysis of the Pseudomonas
putida KT2440 Metabolic Network Facilitates Applications in
Biotechnology Jacek Puchałka, Matthew A. Oberhardt, Miguel Godinho, Agata Bielecka, Daniela Regenhardt, Kenneth N. Timmis, Jason A. Papin, and Vítor A. P. Martins dos Santos PMCID: PMC2563689 |
