| | Education Advanced Genomic Data Mining Xosé M. Fernández-Suárez and Ewan Birney PMCID: PMC2475657 Structure-Guided Comparative Analysis of Proteins: Principles, Tools, and Applications for Predicting Function Raja Mazumder and Sona Vasudevan PMCID: PMC2515338 Review Structural Biology by NMR: Structure, Dynamics, and Interactions Phineus R. L. Markwick, Thérèse Malliavin, and Michael Nilges PMCID: PMC2518859 Research Articles Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth Roeland M. H. Merks, Erica D. Perryn, Abbas Shirinifard, and James A. Glazier PMCID: PMC2528254 A Genomewide Functional Network for the Laboratory Mouse Yuanfang Guan, Chad L. Myers, Rong Lu, Ihor R. Lemischka, Carol J. Bult, and Olga G. Troyanskaya PMCID: PMC2527685 Rhythm Generation through Period Concatenation in Rat Somatosensory Cortex Mark A. Kramer, Anita K. Roopun, Lucy M. Carracedo, Roger D. Traub, Miles A. Whittington, and Nancy J. Kopell PMCID: PMC2518953 Insights into Protein–DNA Interactions through Structure Network Analysis R. Sathyapriya, M. S. Vijayabaskar, and Saraswathi Vishveshwara PMCID: PMC2518215 Sizing Up Allometric Scaling Theory Van M. Savage, Eric J. Deeds, and Walter Fontana PMCID: PMC2518954 Probabilistic Phylogenetic Inference with Insertions and Deletions Elena Rivas and Sean R. Eddy PMCID: PMC2527138 Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of Mycobacterium tuberculosis Robert Riley, Matteo Pellegrini, and David Eisenberg PMCID: PMC2519833 Preferentially Quantized Linker DNA Lengths in Saccharomyces cerevisiae Ji-Ping Wang, Yvonne Fondufe-Mittendorf, Liqun Xi, Guei-Feng Tsai, Eran Segal, and Jonathan Widom PMCID: PMC2522279 Top-Down Analysis of Temporal Hierarchy in Biochemical Reaction Networks Neema Jamshidi and Bernhard Ø. Palsson PMCID: PMC2518853 Identifying the Important HIV-1 Recombination Breakpoints John Archer, John W. Pinney, Jun Fan, Etienne Simon-Loriere, Eric J. Arts, Matteo Negroni, and David L. Robertson PMCID: PMC2522274 Protein Meta-Functional Signatures from Combining Sequence, Structure, Evolution, and Amino Acid Property Information Kai Wang, Jeremy A. Horst, Gong Cheng, David C. Nickle, and Ram Samudrala PMCID: PMC2526173 Adaptation and Selective Information Transmission in the Cricket Auditory Neuron AN2 Klaus Wimmer, K. Jannis Hildebrandt, R. Matthias Hennig, and Klaus Obermayer PMCID: PMC2527132 Modeling Recursive RNA Interference Wallace F. Marshall PMCID: PMC2522276 Spatial Bistability Generates hunchback Expression Sharpness in the Drosophila Embryo Francisco J. P. Lopes, Fernando M. C. Vieira, David M. Holloway, Paulo M. Bisch, and Alexander V. Spirov PMCID: PMC2527687 A Dual Receptor Crosstalk Model of G-Protein-Coupled Signal Transduction Patrick Flaherty, Mala L. Radhakrishnan, Tuan Dinh, Robert A. Rebres, Tamara I. Roach, Michael I. Jordan, and Adam P. Arkin PMCID: PMC2528964 Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, and Vincent T. Lee PMCID: PMC2529408 Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes Jeff Clune, Dusan Misevic, Charles Ofria, Richard E. Lenski, Santiago F. Elena, and Rafael Sanjuán PMCID: PMC2527516 Cavities and Atomic Packing in Protein Structures and Interfaces Shrihari Sonavane and Pinak Chakrabarti PMCID: PMC2582456 Organization of Excitable Dynamics in Hierarchical Biological Networks Mark Müller-Linow, Claus C. Hilgetag, and Marc-Thorsten Hütt PMCID: PMC2542420 |
