| | Editorial Ten Simple Rules for Doing Your Best Research, According to Hamming Thomas C Erren, Paul Cullen, Michael Erren, and Philip E Bourne PMCID: PMC2041981 Message from ISCB Getting Started in Tiling Microarray Analysis X. Shirley Liu PMCID: PMC2041964 “Getting Started In…”: A Series Not to Miss Olga Troyanskaya PMCID: PMC2041983 Perspectives Computational Biology in Brazil Goran Neshich PMCID: PMC2041965 Research Articles Brightness and Darkness as Perceptual Dimensions Tony Vladusich, Marcel P Lucassen, and Frans W Cornelissen PMCID: PMC2041963 Heat Shock Response in CHO Mammalian Cells Is Controlled by a Nonlinear Stochastic Process Ovidiu Lipan, Jean-Marc Navenot, Zixuan Wang, Lei Huang, and Stephen C Peiper PMCID: PMC2000973 A Statistical Framework for Modeling HLA-Dependent T Cell Response Data Jennifer Listgarten, Nicole Frahm, Carl Kadie, Christian Brander, and David Heckerman PMCID: PMC2014793 Universally Sloppy Parameter Sensitivities in Systems Biology Models Ryan N Gutenkunst, Joshua J Waterfall, Fergal P Casey, Kevin S Brown, Christopher R Myers, and James P Sethna PMCID: PMC2000971 Metabolic Reconstruction and Modeling of Nitrogen Fixation in Rhizobium etli Osbaldo Resendis-Antonio, Jennifer L Reed, Sergio Encarnación, Julio Collado-Vides, and Bernhard Ø Palsson PMCID: PMC2000972 Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix Jakob H Havgaard, Elfar Torarinsson, and Jan Gorodkin PMCID: PMC2014794 Differences in Reactivation of Tuberculosis Induced from Anti-TNF Treatments Are Based on Bioavailability in Granulomatous Tissue Simeone Marino, Dhruv Sud, Hillarie Plessner, Philana Ling Lin, John Chan, JoAnne L Flynn, and Denise E Kirschner PMCID: PMC2041971 Enzyme Localization Can Drastically Affect Signal Amplification in Signal Transduction Pathways Siebe B van Albada and Pieter Rein ten Wolde PMCID: PMC2014792 Alternative Splicing Events Identified in Human Embryonic Stem Cells and Neural Progenitors Gene W Yeo, Xiangdong Xu, Tiffany Y Liang, Alysson R Muotri, Christian T Carson, Nicole G Coufal, and Fred H Gage PMCID: PMC2041973 Cerebellar Motor Learning: When Is Cortical Plasticity Not Enough? John Porrill and Paul Dean PMCID: PMC2041974 Evolutionary Models for Formation of Network Motifs and Modularity in the Saccharomyces Transcription Factor Network Jonathan J Ward and Janet M Thornton PMCID: PMC2041975 Landscape as a Model: The Importance of Geometry E. Penelope Holland, James N Aegerter, Calvin Dytham, and Graham C Smith PMCID: PMC2041976 A Stochastic View of Spliceosome Assembly and Recycling in the Nucleus José Rino, Teresa Carvalho, José Braga, Joana M. P Desterro, Reinhard Lührmann, and Maria Carmo-Fonseca PMCID: PMC2041977 Emergence of Recombinant Forms of HIV: Dynamics and Scaling Gajendra W Suryavanshi and Narendra M Dixit PMCID: PMC2041978 Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data Tom C Freeman, Leon Goldovsky, Markus Brosch, Stijn van Dongen, Pierre Mazière, Russell J Grocock, Shiri Freilich, Janet Thornton, and Anton J Enright PMCID: PMC2041979 Empirical Multiscale Networks of Cellular Regulation Benjamin de Bivort, Sui Huang, and Yaneer Bar-Yam PMCID: PMC2041980 Correction Correction: Signal Propagation in Proteins and Relation to Equilibrium Fluctuations Chakra Chennubhotla and Ivet Bahar PMCID: PMC2041982 Corrects: Chakra Chennubhotla, et al. Signal Propagation in Proteins and Relation to Equilibrium Fluctuations. PLoS Comput Biol. 2007 September; 3(9): e172. |
