| | Correspondence Dog as an Outgroup to Human and Mouse Gerton Lunter PMCID: PMC1857806 RNAi Development Mark Gerstein and Shawn M Douglas PMCID: PMC1857818 Education Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners Benjamin A Shoemaker and Anna R Panchenko PMCID: PMC1857810 Editorial Ten Simple Rules for Making Good Oral Presentations Philip E Bourne PMCID: PMC1857815 Research Articles The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics Haiyuan Yu, Philip M Kim, Emmett Sprecher, Valery Trifonov, and Mark Gerstein PMCID: PMC1853125 Psychophysical Tests of the Hypothesis of a Bottom-Up Saliency Map in Primary Visual Cortex Li Zhaoping and Keith A May PMCID: PMC1847698 Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function Yili Chen, Thomas W Blackwell, Ji Chen, Jing Gao, Angel W Lee, and David J States PMCID: PMC1847699 Cell Size at S Phase Initiation: An Emergent Property of the G1/S Network Matteo Barberis, Edda Klipp, Marco Vanoni, and Lilia Alberghina PMCID: PMC1851985 Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering Sebastian Will, Kristin Reiche, Ivo L Hofacker, Peter F Stadler, and Rolf Backofen PMCID: PMC1851984 Towards Complete Sets of Farnesylated and Geranylgeranylated Proteins Sebastian Maurer-Stroh, Manfred Koranda, Wolfgang Benetka, Georg Schneider, Fernanda L Sirota, and Frank Eisenhaber PMCID: PMC1847700 Regulatory Circuit of Human MicroRNA Biogenesis Ji Lee, Zhihua Li, Rachel Brower-Sinning, and Bino John PMCID: PMC1853126 Synchronization-Induced Rhythmicity of Circadian Oscillators in the Suprachiasmatic Nucleus Samuel Bernard, Didier Gonze, Branka Čajavec, Hanspeter Herzel, and Achim Kramer PMCID: PMC1851983 Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations Jun Zhu, Matthew C Wiener, Chunsheng Zhang, Arthur Fridman, Eric Minch, Pek Y Lum, Jeffrey R Sachs, and Eric E Schadt PMCID: PMC1851982 Risk Maps for the Spread of Highly Pathogenic Avian Influenza in Poultry Gert Jan Boender, Thomas J Hagenaars, Annemarie Bouma, Gonnie Nodelijk, Armin R. W Elbers, Mart C. M de Jong, and Michiel van Boven PMCID: PMC1853123 Comprehensive Annotation of Bidirectional Promoters Identifies Co-Regulation among Breast and Ovarian Cancer Genes Mary Q Yang, Laura M Koehly, and Laura L Elnitski PMCID: PMC1853124 Coping with Viral Diversity in HIV Vaccine Design David C Nickle, Morgane Rolland, Mark A Jensen, Sergei L. Kosakovsky Pond, Wenjie Deng, Mark Seligman, David Heckerman, James I Mullins, and Nebojsa Jojic PMCID: PMC1857809 Patterns of Mesenchymal Condensation in a Multiscale, Discrete Stochastic Model Scott Christley, Mark S Alber, and Stuart A Newman PMCID: PMC1857812 Fundamental Limits to Position Determination by Concentration Gradients Filipe Tostevin, Pieter Rein ten Wolde, and Martin Howard PMCID: PMC1857820 Correction Correction: (A)Symmetric Stem Cell Replication and Cancer David Dingli, Arne Traulsen, and Franziska Michor PMCID: PMC1857807 Corrects: David Dingli, et al. (A)Symmetric Stem Cell Replication and Cancer. PLoS Comput Biol. 2007 March; 3(3): e53. |
