Volume 3(1); January 2007 Education Automated Querying of Genome Databases PMCID: PMC1782033 Obituary Editorial Research Articles Using Phylogeny to Improve Genome-Wide Distant Homology Recognition PMCID: PMC1779300 Modeling HER2 Effects on Cell Behavior from Mass Spectrometry Phosphotyrosine Data PMCID: PMC1761044 Protein and DNA Sequence Determinants of Thermophilic Adaptation PMCID: PMC1769408 Both Ligand- and Cell-Specific Parameters Control Ligand Agonism in a Kinetic Model of G Protein–Coupled Receptor Signaling PMCID: PMC1769407 Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster PMCID: PMC1779301 Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope PMCID: PMC1779302 Emergent Dynamics of Thymocyte Development and Lineage Determination PMCID: PMC1782042 Detecting Key Structural Features within Highly Recombined Genes PMCID: PMC1782043 Nitric Oxide Regulates Input Specificity of Long-Term Depression and Context Dependence of Cerebellar Learning PMCID: PMC1769409 | ||