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MTI Interactive
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Background Info
 
Publications

Core Team Members

Evaluation
Analysis

Test Collections
 
Focus Areas
 
Medical Text Indexer (MTI)

Semi-Automatic Indexing

Fully Automatic Indexing

MARS & MTI
Test Bed Results

Word Sense
Disambiguation (WSD)

Journal Descriptor (JD)
Indexing

Full Text Processing

MetaMap Technology
Transfer (MMTx)
      Objective:

The objective of NLM's Indexing Initiative (II) is to investigate methods whereby automated indexing methods partially or completely substitute for current indexing practices. The project will be considered a success if methods can be designed and implemented that result in retrieval performance that is equal to or better than the retrieval performance of systems based principally on humanly assigned index terms.


Background:

For more than 150 years, the National Library of Medicine has provided access to biomedical journal literature through the analytical efforts of human indexers. Since 1966, access has been provided in the form of electronically searchable document surrogates consisting of bibliographic citations, descriptors assigned by indexers from the MeSH controlled vocabulary and, since 1974, author abstracts of many, but not all, items. The objective of the Indexing Initiative project work is to investigate methods whereby automated indexing methods partially or completely substitute for current indexing practices. The project will be considered a success if methods can be designed and implemented that result in retrieval performance that is equal to or better than retrieval of citations based on humanly assigned index terms.

A project of this scope necessarily involves the efforts of many people. Original and Core Project Team Members are from several NLM divisions, including the LHNCBC, LO, and NCBI.

The project will assume the availability of free text in the form of titles and abstracts but will also consider the increasing availability of the full text of journal articles in electronic form. The project will investigate concept-based indexing methods that go well beyond automatic word-based indexing (such as the inverted word index already part of MEDLINE). As insights are gained throughout the project, current operational processes or systems may be iteratively modified and improved in keeping with those insights.

For a list of presentations and papers about the Indexing Initiative, please visit our Publications page.


Resources:

Jump to NCBI's Entrez Search and Retrieval System button NCBI's Entrez Search and Retrieval System allows searching of several linked databases: PubMed, Nucleotide, Protein, Structure, Genome, PopSet, OMIM, Taxonomy, Books, Probe Set, and 3D Domains.

Jump to UMLS Knowledge Source button   UMLS Knowledge Source Server

Jump to MeSH Browser button   MeSH Browser

Get Acrobat Reader button   Adobe's free PDF reader "Acrobat Reader" is required for reading the papers available on this website.



Last Modified: November 06, 2008 ii-public
Links to Our Sites
MetaMap Public Release
NEW: Distributable version of the actual MetaMap program.
Indexing Initiative (II)
Investigating computer-assisted and fully automatic methodologies for indexing biomedical text. Includes the NLM Medical Text Indexer (MTI).
Semantic Knowledge Representation (SKR)
Develop programs to provide usable semantic representation of biomedical text. Includes the MetaMap and SemRep programs.
MetaMap Transfer (MMTx)
Java-Based distributable version of the MetaMap program.
Word Sense Disambiguation (WSD)
Test collection of manually curated MetaMap ambiguity resolution in support of word sense disambiguation research.
Medline Baseline Repository (MBR)
Static MEDLINE Baselines for use in research involving biomedical citations. Allows for query searches and test collection creation.
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