HCV Database
HCV sequence database
 


Please read an important announcement about the future of the HCV database here.

Note: The new recommendations for HCV nomenclature have been published here. A summary of the new system is here.

Recently assigned geno/subtypes
Genotype Assigned to Date
4u Valerie Thiers September 2006
2r Donald Murphy September 2006
6r Donald Murphy November 2006
6s Donald Murphy November 2006
6t* Ling Lu September 2007
6u* Ling Lu February 2008
* Assigned 'confirmed' status because enough unambiguous sequence information was provided.

Geno/subtypes that are presently defined in the database
GenotypeAssigned subtypes
1 a, b, c, d, e, f, g, h, i, j, k, l, m
2 a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r
3 a, b, c, d, e, f, g, h, i, k, l
4 a, b, c, d, e, f, g, h, k, l, m, n, o, p, q, r, s, t
5 a
6 a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u
7 a

The image below shows which regions are defined (meaning there is at least on sequence of that region in the database) for which geno/subtypes. The red colored bar indicates that the genotype is confirmed.

geno/subtype coverage


Old and new geno/subtype names

Old designation New designation
I 1a
II 1b
III 2a
IV 2b
V 3a
VI 3b
4 alpha 4n
4 beta 4o
7a 6e
7b 6d
7c/NGII/VII 6f
7d 6c
NGI 6n
8a 6l
8b 6k
9a 6h
9b 6i
9c 6j
10a/TD3 3k
11a 6g

(genotypes 7-9 reclassified based on Simmonds 1996)

Please note that not all genotype/subtype combinations are defined. Also see Table 2 from the new HCV nomenclature proposal for an overview of recent changes in subtype nomenclature.

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