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Infrastructure > caCORE > Cancer Data Standards Repository (caDSR)

caDSR 4.0 Release Highlights
  • This release completes the process of separating the caCORE APIs.
  • The first caDSR Grid Data Service is being deployed with this release.
  • Enhancements have been made to the caDSR metadata registry, infrastructure and APIs, and tools.
  • All these changes are fully described on the caDSR Release 4.0 Highlights wiki page Opens in New Window: ALT TEXT.
Cancer Data Standards Registry (caDSR)

The CBIIT Resource for Common Data Elements

The caDSR is a database and a set of APIs and tools used to create, edit, control, deploy and find common data elements (CDEs) for metadata consumers and for UML model development. The common data elements are developed by the NCI, together with caBIG® Opens in New Window: ALT TEXT partners in the research community, to be used as metadata descriptors for research and for caCORE-like applications. The UML models are developed by research partners in collaboration with CBIIT, where the UML models are loaded into the caDSR database as administered components.

The use of common data elements addresses a biomedical data management problem, namely the many and varied ways in which similar or identical concepts have been described. Such inconsistency in data descriptors (metadata) makes it nearly impossible to aggregate and manage even modest-sized data sets to ask basic questions and obtain meaningful answers. Common information building blocks or data standards, used for capture of data and for reporting, facilitate understanding and sharing of cancer research information. The use of registered metadata facilitates interoperability among applications developed in research centers and deployed on the caGrid Opens in New Window: ALT TEXT.

For more information about caDSR, including links to documentation and contacts as well as technical background and product status, visit the caDSR Wiki Opens in New Window: ALT TEXT.

Implementation

The caDSR database is an Oracle database. All of caDSR tools and interfaces connect to the same central database. NCI chose an international standard to represent the CDEs in the database, the ISO/IEC 11179 standard for metadata registries Opens in New Window: ALT TEXT. This standard is somewhat complex, but it offers a richly expressive model for metadata that does a good job of supporting the variations needed for biomedical applications. If you are interested in working with the caDSR, review the background information on the way NCI has implemented the ISO/IEC 11179 standard Opens in New Window: ALT TEXT.

In implementing the ISO/IEC 11179 model, NCI has included extensions, among them two important additional types of content in the caDSR, Forms and Protocols. A Form is a collection of CDEs, and a Protocol is a collection of Forms. For clinical trials applications, a Form corresponds to a Case Report Form (CRF), and a Protocol corresponds to a clinical trial protocol.

Tools and Access

The caDSR tools include interactive tools to perform various tasks associated with managing and deploying CDEs, and a series of tools that support reviewing externally generated forms to see if they are CDE-compliant, that is, comprised of approved CDEs found in the caDSR.

The tools have online help. To make using the tools easier, review the description of the CBIIT implementation of the ISO/IEC 11179 Standard Opens in New Window: ALT TEXT. If you would like an account for any of the caDSR tools, please send a request describing the nature of your interest in the system to NCICB Application Support. The caDSR Tools include the following.

Link to tool: CDE Browser CDE Browser Opens in New Window: CDE Browser.  This is your starting point for exploring the contents of the caDSR. The tool supports browsing, searching, and exporting CDEs within or across contexts. More information is available on the CDE Browser Opens in New Window: ALT TEXT wiki page. You do not need an account to use the CDE Browser.
Link to tool: UML Model Browser

UML Model Browser Opens in New Window: UML Model Browser.  This tool supports browsing and searching UML Models loaded in the caDSR. This allows users to find Administered Items that are part of registered UML models. More information is available on the UML Model Browser Opens in New Window: ALT TEXT wiki page. You do not need an account to use the UML Model Browser.

caDSR Freestyle Search Opens in New Window: caDSR Freestyle Search.  The caDSR Freestyle Search Engine performs weighted semantic searches on the content of Administered Items in the caDSR. The search terms and phrases are not required to match items in the database exactly. Information about items searched and results is available on the Freestyle Search Opens in New Window: ALT TEXT wiki page.
Link to tool: CDE Curation Tool CDE Curation Tool Opens in New Window: CDE Curation Tool.  Intended for Context administrators, this tool supports the creation and editing of Data Element Concepts, Value Domains, and Data Elements. An account is required to use this tool, and you must have curatorial authority for your Context. More information is available on the CDE Curation Tool Opens in New Window: ALT TEXT wiki page.
Link to tool: Semantic Integration Workbench Semantic Integration Workbench Opens in New Window: SIW.  The SIW is a Java Web Start application within the caCORE toolset that assists users in adding consistent metadata to their UML model by matching their concepts with similar items from the NCI Thesaurus. This is a  prerequisite to running the UML Loader. More information is available on the SIW Opens in New Window: ALT TEXT wiki page.
caDSR Sentinel Tool Opens in New Window: Sentinel Tool.  This tool allows users to create and manage Alert Definitions for the caDSR, in order to receive email alerts and thus monitor changes to Administered Items. Information about what is monitored and reported and how reports may be set up is available on the Sentinel Tool Opens in New Window: ALT TEXT wiki page.
Link to tool: caDSR Administration Tool caDSR Administration Tool Opens in New Window: caDSR Administration Tool. This is the main administrative interface to all of the caDSR features and components for Context and central caDSR administrators. You must have an account to use this tool and appropriate privileges for each function. More information is available on the caDSR Administration Tool Opens in New Window: ALT TEXT wiki page.
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