Database | Type | Available formats | Location on the Helix Systems | Accessible via | Last updated | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cambridge Structural Database
Crystal structure information for over 165,000 organic and organometallic compounds. More info at CCDC. | 3-D | CSD | /local/csd | Quest | 02 Apr 2008 (Updated every 3 months Chicken Genome
| May 2006 assembly from WUSTL. Nuc |
MySQL |
NIH mirror of UCSC Genome Browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 30 Dec 2007 | (Updated weekly Prot |
MySQL |
NIH mirror of UCSC Genome Browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 30 Dec 2007 | (Updated weekly Annotations |
MySQL |
NIH mirror of UCSC Genome Browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 30 Dec 2007 | (Updated weekly Cow Genome
| Aug 2006 assembly from the Baylor Sequencing Center Nuc |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 24 Mar 2008 | (Updated weekly Prot |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 24 Mar 2008 | (Updated weekly Annotations |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 24 Mar 2008 | (Updated weekly Dog Genome
| May 2005 assembly from the Broad Institute Nuc |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 30 Dec 2007 | (Updated weekly Prot |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 30 Dec 2007 | (Updated weekly Annotations |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 30 Dec 2007 | (Updated weekly Drosophila
| Drosophila sequences Nuc |
Blast |
/fdb/blastdb/drosoph.nt |
Blast (Helix)
|
Blast (Biowulf) 25 Jul 2005 | (Updated weekly Fasta |
/fdb/fastadb/drosoph.nt.fas |
Fasta,
BLAT.
User programs. |
25 Jul 2005 | (Updated weekly WU-Blast |
/fdb/wublastdb/drosoph.nt |
WU-Blast
|
10 Nov 2008 | (Updated weekly Prot |
Blast |
/fdb/blastdb/drosoph.aa |
Blast (Helix)
|
Blast (Biowulf) 25 Jul 2005 | (Updated weekly Fasta |
/fdb/fastadb/drosoph.aa.fas |
Fasta,
BLAT.
User programs. |
25 Jul 2005 | (Updated weekly WU-Blast |
/fdb/wublastdb/drosoph.aa |
WU-Blast
|
10 Nov 2008 | (Updated weekly Drosophila genome
| April 2006 assembly Annotations |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 30 Dec 2007 | (Updated weekly E.Coli
| E.Coli sequences Nuc |
Blast |
/fdb/blastdb/ecoli.nt |
Blast (Helix)
|
Blast (Biowulf) 25 Jul 2005 | (Updated weekly Fasta |
/fdb/fastadb/ecoli.nt.fas |
Fasta,
BLAT.
User programs. |
25 Jul 2005 | (Updated weekly WU-Blast |
/fdb/wublastdb/ecoli.nt |
WU-Blast
|
10 Nov 2008 | (Updated weekly Blast |
/fdb/blastdb/ecoli.nt |
Blast (Helix)
|
Blast (Biowulf) 25 Jul 2005 | (Updated weekly Prot |
Blast |
/fdb/blastdb/ecoli.aa |
Blast (Helix)
|
Blast (Biowulf) 19 Mar 2006 | (Updated weekly Fasta |
/fdb/fastadb/ecoli.aa.fas |
Fasta,
BLAT.
User programs. |
25 Jul 2005 | (Updated weekly WU-Blast |
/fdb/wublastdb/ecoli.aa |
WU-Blast
|
10 Nov 2008 | (Updated weekly EST
| EST division of Genbank Nuc |
EMBOSS |
/fdb/embossdb/est.new |
EMBOSS web
interface |
& EMBOSS command-line 22 Nov 2008 | (Updated bimonthly after Genbank release EST - human
| Human sequences from the EST division of Genbank Nuc |
Blast |
/fdb/blastdb/est_human |
Blast (Helix)
|
Blast (Biowulf) 04 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/est_human |
WU-Blast
|
15 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/est_human.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly EST - mouse
| Mouse sequences from the EST division of Genbank. Nuc |
Blast |
/fdb/blastdb/est_mouse |
Blast (Helix)
|
Blast (Biowulf) 04 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/est_mouse |
WU-Blast
|
15 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/est_mouse.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly EST - others
| Non-human, non-mouse sequences from the EST division of Genbank Nuc |
Blast |
/fdb/blastdb/est_others |
Blast (Helix)
|
Blast (Biowulf) 04 Dec 2008 | (Updated weekly Gb_New
| All sequences added to Genbank since last major release Nuc |
EMBOSS |
/fdb/embossdb/gbnew.new |
EMBOSS web
interface |
& EMBOSS command-line 03 Dec 2008 | (Updated daily Genbank
| The NIH Genetic Sequence Database, an annotated collection of all publicly available DNA sequences. More information at NCBI. Nuc |
EMBOSS |
/fdb/embossdb/genbank.new |
EMBOSS web
interface |
& EMBOSS command-line 16 Dec 2008 | (Updated bimonthly after Genbank release GenPept
| GenPept is produced by parsing the corresponding GenBank release for translated coding regions of GenBank sequences. More information at NCI, Frederick Prot |
EMBOSS |
/fdb/embossdb/genpept.new |
EMBOSS web
interface |
& EMBOSS command-line 18 Nov 2008 | (Updated bimonthly after Genbank release GP_New
| All sequences added to GenPept since last major release Prot |
EMBOSS |
/fdb/embossdb/gpnew.new |
EMBOSS web
interface |
& EMBOSS command-line 03 Dec 2008 | (Updated daily HTGs
| High throughput genome sequences Nuc |
Blast |
/fdb/blastdb/htgs |
Blast (Helix)
|
Blast (Biowulf) 27 Nov 2008 | (Updated weekly Human Genome
| Build 36, hg18 (April 2006) from the International Human Genome Consortium Nuc |
Blast |
/fdb/blastdb/hs_genome |
Blast (Helix)
|
Blast (Biowulf) 01 May 2006 | (Updated after new build release Fasta |
/fdb/genome/human-apr2006/ |
Fasta,
BLAT.
User programs. |
01 May 2006 | (Updated after new build release MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 25 Nov 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/hs_genome |
WU-Blast
|
01 May 2006 | (Updated weekly Prot |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 25 Nov 2008 | (Updated weekly Annotations |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 25 Nov 2008 | (Updated weekly Human Genome Proteins
| Build 36, hg18 (April 2006) from the International Human Genome Consortium Prot |
Fasta |
/fdb/fastadb/hs_genome.protein.fas |
Fasta,
BLAT.
User programs. |
28 Apr 2006 | (Updated after build release WU-Blast |
/fdb/wublastdb/hs_genome.protein |
WU-Blast
|
01 May 2006 | (Updated after build release Blast |
/fdb/blastdb/hs_genome.protein |
Blast (Helix)
|
Blast (Biowulf) 29 Mar 2008 | (Updated after build release Human Genome RNA
| Build 36, hg18 (April 2006) from the International Human Genome Consortium Nuc |
Fasta |
/fdb/fastadb/hs_genome.rna.fas |
Fasta,
BLAT.
User programs. |
28 Apr 2006 | (Updated after build release Blast |
/fdb/blastdb/hs_genome.rna |
Blast (Helix)
|
Blast (Biowulf) 29 Mar 2008 | (Updated after build release WU-Blast |
/fdb/wublastdb/hs_genome.rna |
WU-Blast
|
01 May 2006 | (Updated after build release Mito
| Mitochondrial sequences Nuc |
Blast |
/fdb/blastdb/mito.nt |
Blast (Helix)
|
Blast (Biowulf) 25 Jul 2005 | (Updated weekly Fasta |
/fdb/fastadb/mito.nt.fas |
Fasta,
BLAT.
User programs. |
25 Jul 2005 | (Updated weekly WU-Blast |
/fdb/wublastdb/mito.nt |
WU-Blast
|
10 Nov 2008 | (Updated weekly Prot |
Blast |
/fdb/blastdb/mito.aa |
Blast (Helix)
|
Blast (Biowulf) 25 Jul 2005 | (Updated weekly Fasta |
/fdb/fastadb/mito.aa.fas |
Fasta,
BLAT.
User programs. |
25 Jul 2005 | (Updated weekly WU-Blast |
/fdb/wublastdb/mito.aa |
WU-Blast
|
29 Oct 2008 | (Updated weekly Mouse Genome
| Build 37, mm9, Jul 2007 from the Mouse Genome Consortium Nuc |
Blast |
/fdb/blastdb/mouse_genome |
Blast (Helix)
|
Blast (Biowulf) 25 Mar 2008 | (Updated after new build release WU-Blast |
/fdb/wublastdb/mouse_genome |
WU-Blast
|
25 Mar 2008 | (Updated after new build release Fasta |
/fdb/genome/mouse-mar2006/ |
Fasta,
BLAT.
User programs. |
26 Mar 2008 | (Updated after new build release MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 25 Nov 2008 | (Updated weekly Prot |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 25 Nov 2008 | (Updated weekly Annotations |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 25 Nov 2008 | (Updated weekly Mouse Genome Proteins
| Build 37, mm9, Jul 2007 from the Mouse Genome Consortium Prot |
Blast |
/fdb/blastdb/mouse_genome.protein |
Blast (Helix)
|
Blast (Biowulf) 26 Mar 2008 | (Updated weekly Fasta |
/fdb/fastadb/mouse_genome.protein.fas |
Fasta,
BLAT.
User programs. |
25 Mar 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/mouse_genome.protein |
WU-Blast
|
25 Mar 2008 | (Updated weekly Mouse Genome RNA
| Build 37, mm9, Jul 2007 from the Mouse Genome Consortium Nuc |
Blast |
/fdb/blastdb/mouse_genome.rna |
Blast (Helix)
|
Blast (Biowulf) 26 Mar 2008 | (Updated after release Fasta |
/fdb/fastadb/mouse_genome.rna.fas |
Fasta,
BLAT.
User programs. |
25 Mar 2008 | (Updated after release WU-Blast |
/fdb/wublastdb/mouse.rna |
WU-Blast
|
25 Mar 2008 | (Updated after release MSDB
| A nonredundant protein sequence database designed specifically for mass-spec applications. Prot |
Mascot |
biospec.nih.gov |
Mascot search engine
|
20 Jun 2008 | (Updated weekly NCBI nr
| NCBI's nonredundant Genbank CDS translations + PDB + SwissProt Prot |
Blast |
/fdb/blastdb/nr |
Blast (Helix)
|
Blast (Biowulf) 04 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/nr.aa.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly Mascot |
biospec.nih.gov |
Mascot search engine
|
15 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/nr |
WU-Blast
|
15 Dec 2008 | (Updated weekly NCBI nt
| All GenBank+EMBL+DDBJ (but no EST, STS, GSS, HTG). No longer nonredundant. Nuc |
Blast |
/fdb/blastdb/nt |
Blast (Helix)
|
Blast (Biowulf) 04 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/nt |
WU-Blast
|
15 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/nt.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly NIH-Specific
| A collection of NIH-specific databases requested by NIH Mascot users. Prot |
Mascot |
biospec.nih.gov |
Mascot search engine
|
05 Jan 2009 | (Updated as requested PFAM
| A collection of multiple sequence alignments and hidden Markov models. More information at PFAM home page Families |
PFAM |
/fdb/fastadb/pfam |
HMMER (Biowulf, Helix)
|
04 Jan 2007 | (Updated every 3 months Prints
| Protein fingerprints, groups of conserved motifs used to characterize a protein family. Patterns |
EMBOSS |
used internally by Emboss |
EMBOSS web
interface |
& EMBOSS command-line 16 Dec 2008 | (Updated after new Prints release Prosite
| A database/dictionary of protein sites and patterns. More information at Expasy. Patterns |
EMBOSS |
used internally by Emboss |
EMBOSS web
interface |
& EMBOSS command-line 16 Dec 2008 | (Updated every 2 months Protein Data Bank
| An archive of experimentally determined three-dimensional strtures of biological macromolecules. More information at the PDB. Nuc |
Blast |
/fdb/blastdb/pdbnt |
Blast (Helix)
|
Blast (Biowulf) 04 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/pdb.nt.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/pdb.nt |
WU-Blast
|
15 Dec 2008 | (Updated weeekly Prot |
Blast |
/fdb/blastdb/pdbaa |
Blast (Helix)
|
Blast (Biowulf) 04 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/pdb.aa.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/pdb.aa |
WU-Blast
|
15 Dec 2008 | (Updated weekly 3-D |
PDB |
/pdb/pdb |
Molecules R Us or direct access to coordinate files. |
NIH users can NFS-mount the PDB databases on their own machines -- contact staff@helix.nih.gov for more info. 13 Jan 2009 | (Updated daily Rat Genome
| May 2006 build, rn4, from the Rat Genome Sequencing Consortium Nuc |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 29 Dec 2007 | (Updated weekly Prot |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 29 Dec 2007 | (Updated weekly Annotations |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 29 Dec 2007 | (Updated weekly REBASE
| About restriction enzymes, recognition sequences, cleavage sites... More information at REBASE. Enzymes |
EMBOSS |
used internally by Emboss |
EMBOSS web
interface |
& EMBOSS command-line 16 Dec 2008 | (Updated every month Refseq Human Genomic
| Refseq Human (NC_######) chromosome records with gap adjusted concatenated NT_ contigs Nuc |
Blast |
/fdb/blastdb/human_genomic |
Blast (Helix)
|
Blast (Biowulf) 04 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/ref.human.genomic.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly Refseq Human Proteins
| A comprehensive, integrated, non-redundant set of sequences. More info at NCBI Prot |
Blast |
/fdb/blastdb/human.protein |
Blast (Helix)
|
Blast (Biowulf) 15 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/ref.human.protein.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/ref.human.protein |
WU-Blast
|
15 Dec 2008 | (Updated weekly Refseq Human RNA
| A comprehensive, integrated, non-redundant set of sequences. More info at NCBI Nuc |
Blast |
/fdb/blastdb/human.rna |
Blast (Helix)
|
Blast (Biowulf) 15 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/ref.human.rna.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/ref.human.rna |
WU-Blast
|
15 Dec 2008 | (Updated weekly Refseq Mouse Proteins
| A comprehensive, integrated, non-redundant set of sequences. More info at NCBI Prot |
Blast |
/fdb/blastdb/mouse.protein |
Blast (Helix)
|
Blast (Biowulf) 15 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/ref.mouse.protein.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/ref.mouse.protein |
WU-Blast
|
15 Dec 2008 | (Updated weekly Refseq Mouse RNA
| A comprehensive, integrated, non-redundant set of sequences. More info at NCBI Nuc |
Blast |
/fdb/blastdb/mouse.rna |
Blast (Helix)
|
Blast (Biowulf) 15 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/ref.mouse.rna.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/ref.mouse.rna |
WU-Blast
|
15 Dec 2008 | (Updated weekly Refseq Other Genomic
| RefSeq chromosome records (NC_######) for organisms other than human Nuc |
Blast |
/fdb/blastdb/other_genomic |
Blast (Helix)
|
Blast (Biowulf) 03 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/ref.other.genomic.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly Refseqaa
| NCBI's comprehensive, integrated, non-redundant set of protein sequences for major research organisms. Prot |
EMBOSS |
/fdb/embossdb/refseqaa.new |
EMBOSS web
interface |
& EMBOSS command-line 03 Dec 2008 | (Updated weekly Refseqnt
| NCBI's comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA) for major research organisms. Nuc |
EMBOSS |
/fdb/embossdb/refseqnt.new |
EMBOSS web
interface |
& EMBOSS command-line 03 Dec 2008 | (Updated weekly Rhesus genome
| Jan 2006 assembly from the Baylor Sequencing Center. Nuc |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 26 Aug 2008 | (Updated weekly Prot |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 26 Aug 2008 | (Updated weekly Annotations |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 26 Aug 2008 | (Updated weekly Sp_Trembl
| SwissProt + Trembl (a computer-annotated supplement of SwissProt) Prot |
Mascot |
biospec.nih.gov |
Mascot search engine
|
21 Dec 2008 | (Updated weekly SwissProt
| A highly-annotated, curated protein sequence database. Minimal redundancy and high level of integration with other databases. More information at Expasy Prot |
Blast |
/fdb/blastdb/swissprot |
Blast (Helix)
|
Blast (Biowulf) 04 Dec 2008 | (Updated weekly Fasta |
/fdb/fastadb/swissprot.aa.fas |
Fasta,
BLAT.
User programs. |
15 Dec 2008 | (Updated weekly Mascot |
biospec.nih.gov |
Mascot search engine
|
21 Dec 2008 | (Updated weekly WU-Blast |
/fdb/wublastdb/swissprot.aa |
WU-Blast
|
15 Dec 2008 | (Updated weekly Transfac
| Transcription factor database, most recent version from www.biobase.de. Info |
EMBOSS |
used internally by Emboss |
EMBOSS web
interface |
& EMBOSS command-line 24 Nov 2008 | (Updated with new Transfac release. UniProt
| (Swissprot + Trembl) A highly-annotated, curated protein sequence database. Minimal redundancy and high level of integration with other databases. More information at Expasy Prot |
EMBOSS |
/fdb/embossdb/uniprot |
EMBOSS web
interface |
& EMBOSS command-line 16 Dec 2008 | (Updated weekly UniVec Core
| A non-redundant database of sequences commonly attached to cDNA or genomic DNA during the cloning process. Includes only oligonucleotides and vectors consisting of bacterial, phage, viral, yeast or synthetic sequences, but not vectors that include sequences of mammalian origin. Nuc |
Blast |
/fdb/blastdb/univec_core |
Blast (Helix)
|
Blast (Biowulf) 28 Apr 2008 | (Updated once Yeast
| Yeast sequences Nuc |
Blast |
/fdb/blastdb/yeast.nt |
Blast (Helix)
|
Blast (Biowulf) 25 Jul 2005 | (Updated weekly Fasta |
/fdb/fastadb/yeast.nt.fas |
Fasta,
BLAT.
User programs. |
25 Jul 2005 | (Updated weekly WU-Blast |
/fdb/wublastdb/yeast.nt |
WU-Blast
|
10 Nov 2008 | (Updated weekly Prot |
Blast |
/fdb/blastdb/yeast.aa |
Blast (Helix)
|
Blast (Biowulf) 25 Jul 2005 | (Updated weekly Fasta |
/fdb/fastadb/yeast.aa.fas |
Fasta,
BLAT.
User programs. |
25 Jul 2005 | (Updated weekly WU-Blast |
/fdb/wublastdb/yeast.aa |
WU-Blast
|
10 Nov 2008 | (Updated weekly Zebrafish genome
| Mar 2006 assembly from the Sanger Center. Nuc |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 30 Dec 2007 | (Updated weekly Prot |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 30 Dec 2007 | (Updated weekly Annotations |
MySQL |
NIH mirror of UCSC genome browser |
NIH mirror of UCSC Genome Browser |
Also available for direct MySQL queries from the Biowulf cluster nodes. 30 Dec 2007 | (Updated weekly |