HCV Database
HCV sequence database
 


Please read an important announcement about the future of the HCV database here.

If you select fields from several tables, they must be joined by common keys. For example, if you are interested in fields in the Patient and the Sequence sample table, you must select the PAT id key in both tables. If you want the Sequence sample and Accession tables, they must be joined by the SE id keys in both tables.
Tip: Click on the table names below for examples of the field values in that table.
Tip: Including a Se id field will speed up sequence downloads.
More information

Select the fields you want to be included in the search interface below. The "Select standard fields" button selects all fields that are included in the standard search interface, so you can add other fields.


Accession(SA)
SE id
Accession
Sequence sample(SSAM)
SE id
PAT id
Geno/subtype
Name
Sampling country
Sampling city
Geographic region
Sampling date
Patient age
HIV co-infection
HBV co-infection
ALT level
Drug naive
Patient health
Sample tissue
Isolate name
Clone name
Locus name
Authors
Recombinant
Bad Sequence
Genotype Annotated
Genotype Provisional/Confirmed
Sequence Comment
Modification Date
Patient(PAT)
PAT id
Patient code
Risk factor
Treatment response
Infection outcome
HLA type
Sex
Ethnicity
Infection country
Infection city
Infection year
Comment
Host species
Sequence map(SM)
SE id
model start
model end
HCV-H start
HCV-H end
Sequence entry(SE)
SE id
Sequence length
Genbank comment
Sequence
Patent sequence
HCV DB comment
GenBank Date
Download Date
From Database
Publication link(SPL)
SE id
PUB id
Publication number
Publication(PUB)
PUB id
Article title
Journal
Pubmed ID
Medline ID
Annotated
Person(PER)
PER id
Last name
Initials
Author(AU)
PUB id
PER id
Sequence entry feature(SEF)
SE id
PUB id
Sequence feature type
Description
Location(LOC)
LOC id
SE id
Region feature type
Description
Sequence feature(SF)
LOC id
Feature type
Feature value
Feature text
Cluster(CLU)
CLU id
CLU name
CLU description
PUB_id
Cluster link(CPL)
CLU id
PAT id


    




Questions or comments? Contact us at hcv-info@lanl.gov