HCV Database
HCV sequence database
 
Housekeeping
Site map HCV classification How to use this site Comments Help files News emails Primer email list
Retrieving data
Search interface Advanced search Geography Alignments Known Genotypes Flaviviruses HCV variability External datasets Genome sequencing
Analysis
PhyloPlace TreeMaker HCV-BLAST Syn-nonsyn PCOORD N-Glycosite Entropy Findmodel VESPA Highlighter
Tools
ElimDupes Translate SynchAligns Consensus Gene Cutter Sequence Locator Seq-Convert Gapstrip/squeeze ELF PeptGen MotifScan Primalign Epilign SeqPublish BranchLength
Links
Immunology DB Database software Conferences Web resources HIV databases


Please read an important announcement about the future of the HCV database here.

Show an image of an alignment with 1 pixel per residue

Purpose: This tool generates a PNG image of an alignment using 1 or more colored pixel(s) for each residue. This way, errors in large alignments can be quickly spotted. We provided an example of how to use the tool.

Input
Paste your alignment here
[Sample Input]
or upload your file
Options
Choose sequence type Amino-acid
DNA
Scale (each alignment residue will be a square of this many pixels per side)

This tool is based on code created by Will Fischer.




Questions or comments? Contact us at hcv-info@lanl.gov

 
Operated by Los Alamos National Security, LLC. for the U.S. Department of Energy's National Nuclear Security Administration
Copyright © 2005-2006 LANSLLC All rights reserved | Disclaimer/Privacy | SITE MAP
Dept of Health & Human Services Los Alamos National Institutes of Health