Quantitative Biology

Authors and titles for recent submissions

[ total of 25 entries: 1-25 ]
[ showing 25 entries per page: fewer | more ]

Wed, 14 Jan 2009

[1]  arXiv:0901.1851 [pdf, other]
Title: Generic Mechanism of Emergence of Amyloid Protofilaments from Disordered Oligomeric aggregates
Authors: Stefan Auer, Filip Meersman, Christopher M. Dobson, Michele Vendruscolo
Comments: 14 pages, 4 figures
Subjects: Biomolecules (q-bio.BM)
[2]  arXiv:0901.1846 [pdf, other]
Title: Self-Templated Nucleation in Peptide and Protein aggregation
Authors: Stefan Auer, Christopher M. Dobson, Michele Vendruscolo, Amos Maritan
Comments: 4 pages, 3 figures
Journal-ref: Phys. Rev. Lett., 101, 258101 (2008)
Subjects: Biomolecules (q-bio.BM)
[3]  arXiv:0901.1675 [ps, pdf, other]
Title: Maximal Information Transfer and Behavior Diversity in Random Threshold Networks
Authors: M. Andrecut, D. Foster, H. Carteret, S. A. Kauffman
Comments: 14 pages, 4 figures
Subjects: Quantitative Methods (q-bio.QM)

Tue, 13 Jan 2009

[4]  arXiv:0901.1657 [pdf, other]
Title: Level-k Phylogenetic Network can be Constructed from a Dense Triplet Set in Polynomial Time
Authors: Thu-Hien To, Michel Habib
Subjects: Populations and Evolution (q-bio.PE)
[5]  arXiv:0901.1598 [ps, pdf, other]
Title: constNJ: an algorithm to reconstruct sets of phylogenetic trees satisfying pairwise topological constraints
Authors: Frederick A. Matsen
Comments: Please contact me with any questions or comments!
Subjects: Populations and Evolution (q-bio.PE)
[6]  arXiv:0901.1572 [pdf]
Title: Why do dolphins form mixed-species associations in the Azores ?
Authors: Sophie Quérouil (IMAR-Dop, Caviar), M. A. Silva (IMAR-Dop), I. Cascao (IMAR-Dop), S. Magalhaes (IMAR-Dop), M. I. Seabra (IMAR-Dop), M. A. Machete (IMAR-Dop), R. S. Santos (IMAR-Dop)
Journal-ref: Ethology 114, 12 (2008) 1183-1194
Subjects: Populations and Evolution (q-bio.PE)
[7]  arXiv:0901.1544 [pdf, other]
Title: Module networks revisited: computational assessment and prioritization of model predictions
Authors: Anagha Joshi, Riet De Smet, Kathleen Marchal, Yves Van de Peer, Tom Michoel
Comments: 8 pages REVTeX, 6 figures
Subjects: Quantitative Methods (q-bio.QM); Molecular Networks (q-bio.MN)
[8]  arXiv:0901.1465 [ps, pdf, other]
Title: To Understand Nature - Computer Modelling between Genetics and Evolution
Authors: Dorota Mackiewicz, Stanislaw Cebrat
Comments: 32 pages, 19 figures
Subjects: Genomics (q-bio.GN); Populations and Evolution (q-bio.PE)
[9]  arXiv:0901.1464 [ps, pdf, other]
Title: Evolution of the Age Structured Populations and Demography
Authors: Agnieszka Laszkiewicz, Przemyslaw Biecek, Katarzyna Bonkowska, Stanislaw Cebrat
Comments: 35 pages, 19 figures
Subjects: Genomics (q-bio.GN); Populations and Evolution (q-bio.PE)
[10]  arXiv:0901.1361 [ps, pdf, other]
Title: Darwinian purifying selection versus complementing strategy in Monte Carlo simulations
Authors: Wojciech Waga, Marta Zawierta, Jakub Kowalski, Stanislaw Cebrat
Comments: 32 pages, 19 figures
Subjects: Genomics (q-bio.GN); Populations and Evolution (q-bio.PE)
[11]  arXiv:0901.1320 [pdf, other]
Title: Diploidy, homologous recombination repair, and the selective advantage for sexual reproduction in unicellular organisms
Authors: Maya Kleiman, Emmanuel Tannenbaum
Comments: 24 pages, 6 figures. An expanded version with additional figures and longer discussion is being prepared for submission for publication
Subjects: Populations and Evolution (q-bio.PE)
[12]  arXiv:0901.1605 (cross-list from physics.data-an) [pdf, other]
Title: Modular organization as a basis for the functional integration/segregation in large-scale brain networks
Authors: M. Valencia, M. A. Pastor, MA. Fernandez-Seara, J. Artieda, J. Martinerie, M. Chavez
Comments: 8 pages, 4 figures
Subjects: Data Analysis, Statistics and Probability (physics.data-an); Biological Physics (physics.bio-ph); Neurons and Cognition (q-bio.NC)
[13]  arXiv:0901.1170 (cross-list from physics.soc-ph) [pdf, other]
Title: Internal network dynamics prolong a losing battle
Authors: Zhenyuan Zhao, Juan Camilo Bohorquez, Alex Dixon, Neil F. Johnson
Subjects: Physics and Society (physics.soc-ph); Biological Physics (physics.bio-ph); Populations and Evolution (q-bio.PE)
[14]  arXiv:0812.2299 (cross-list from physics.soc-ph) [pdf, other]
Title: Human group formation in online guilds and offline gangs driven by common team dynamic
Authors: Neil F. Johnson, Chen Xu, Zhenyuan Zhao, Nicolas Ducheneaut, Nicholas Yee, George Tita, Pak Ming Hui
Subjects: Physics and Society (physics.soc-ph); Biological Physics (physics.bio-ph); Populations and Evolution (q-bio.PE)

Mon, 12 Jan 2009

[15]  arXiv:0901.1248 [pdf]
Title: Identification of direct residue contacts in protein-protein interaction by message passing
Authors: M. Weigt, R.A. White, H. Szurmant, J.A. Hoch, T. Hwa
Comments: Supplementary information available on this http URL
Journal-ref: Proc. Natl. Acad. Sci. 106(1), 67-72 (2009)
Subjects: Biomolecules (q-bio.BM); Statistical Mechanics (cond-mat.stat-mech); Quantitative Methods (q-bio.QM)
[16]  arXiv:0812.4692 (cross-list from physics.bio-ph) [ps, pdf, other]
Title: RNA polymerase motor on DNA track: effects of interactions, external force and torque
Authors: Tripti Tripathi, Prasanjit Prakash, Debashish Chowdhury
Comments: A new figure added to explain the model
Subjects: Biological Physics (physics.bio-ph); Statistical Mechanics (cond-mat.stat-mech); Subcellular Processes (q-bio.SC)

Fri, 9 Jan 2009

[17]  arXiv:0901.0990 [ps, pdf, other]
Title: Phase transition in the genome evolution favours non-random distribution of genes on chromosomes
Authors: Jakub Kowalski, Wojciech Waga, Marta Zawierta, Stanislaw Cebrat
Comments: 13 pages, 7 figures, publication
Subjects: Genomics (q-bio.GN); Populations and Evolution (q-bio.PE)
[18]  arXiv:0901.0976 [pdf]
Title: Simple MaxEnt Models for Food Web Degree Distributions
Authors: Richard J. Williams
Comments: 29 pages, 6 figures
Subjects: Populations and Evolution (q-bio.PE)
[19]  arXiv:0901.0955 [ps, pdf, other]
Title: Four-state rock-paper-scissors games on constrained Newman-Watts networks
Authors: Guo-Yong Zhang, Yong Chen, Wei-Kai Qi, Shao-Meng Qin
Comments: 6 pages, 7 figures
Subjects: Populations and Evolution (q-bio.PE)
[20]  arXiv:0901.0936 [ps, pdf, other]
Title: Dynamics of the bacterial flagellar motor with multiple stators
Authors: G. Meacci, Y. Tu
Comments: 18 pages, 6 figures, to be published in PNAS
Subjects: Subcellular Processes (q-bio.SC); Cell Behavior (q-bio.CB)
[21]  arXiv:0901.0829 (cross-list from nlin.AO) [ps, pdf, other]
Title: Statistical Complexity and Nontrivial Collective Behavior in Electroencephalografic Signals
Authors: M. Escalona-Moran, M.G. Cosenza, R. Lopez-Ruiz, P. Garcia
Comments: 10 pages, 3 figures
Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Neurons and Cognition (q-bio.NC)

Thu, 8 Jan 2009

[22]  arXiv:0901.0775 [pdf, other]
Title: The strong associations between organism characteristics and network architecture
Authors: Soumen Roy, Vladimir Filkov
Comments: 7 Pages, 2 Figures, 1 Table
Subjects: Quantitative Methods (q-bio.QM); Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph)
[23]  arXiv:0901.0874 (cross-list from math.DS) [ps, pdf, other]
Title: Within-burst synchrony changes for coupled elliptic bursters
Authors: Abul kalam al Azad, Peter Ashwin
Comments: 17 pages, 13 figures, 2 tables
Subjects: Dynamical Systems (math.DS); Neurons and Cognition (q-bio.NC)
[24]  arXiv:0901.0866 (cross-list from physics.bio-ph) [pdf]
Title: Folding@Home and Genome@Home: Using distributed computing to tackle previously intractable problems in computational biology
Authors: Stefan M. Larson, Christopher D. Snow, Michael Shirts, Vijay S. Pande
Subjects: Biological Physics (physics.bio-ph); Computational Physics (physics.comp-ph); Quantitative Methods (q-bio.QM)
[25]  arXiv:0901.0357 (cross-list from cond-mat.stat-mech) [ps, pdf, other]
Title: Evolve Networks Towards Better Performance: a Compromise between Mutation and Selection
Authors: Zhen Shao, Hai-jun Zhou
Comments: 27 pages 15 figures
Subjects: Statistical Mechanics (cond-mat.stat-mech); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)
[ total of 25 entries: 1-25 ]
[ showing 25 entries per page: fewer | more ]