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Volume 6;  2008
Methodology
Development of pan-specific antibody against trimethyllysine for protein research
Ziqian Liang, Ronald PC Wong, Lin Hong Li, Hesheng Jiang, Hao Xiao, and Gang Li
Proteome Sci. 2008; 6: 2. Published online 2008 January 22. doi: 10.1186/1477-5956-6-2.
PMCID: PMC2267453
Data mining of plasma peptide chromatograms for biomarkers of air contaminant exposures
Subramanian Karthikeyan, Premkumari Kumarathasan, and Renaud Vincent
Proteome Sci. 2008; 6: 6. Published online 2008 January 30. doi: 10.1186/1477-5956-6-6.
PMCID: PMC2270821
Proteome alteration induced by hTERT transfection of human fibroblast cells
Gabriel D Mazzucchelli, Valérie Gabelica, Nicolas Smargiasso, Maximilien Fléron, Wilson Ashimwe, Frédéric Rosu, Marie-Claire De Pauw-Gillet, Jean-François Riou, and Edwin De Pauw
Proteome Sci. 2008; 6: 12. Published online 2008 April 17. doi: 10.1186/1477-5956-6-12.
PMCID: PMC2386453
Multidimensional protein fractionation using ProteomeLab PF 2D™ for profiling amyotrophic lateral sclerosis immunity: A preliminary report
Joshua D Schlautman, Wojciech Rozek, Robert Stetler, R Lee Mosley, Howard E Gendelman, and Pawel Ciborowski
Proteome Sci. 2008; 6: 26. Published online 2008 September 12. doi: 10.1186/1477-5956-6-26.
PMCID: PMC2543004
Label-free detection of biomolecular interactions in real time with a nano-porous silicon-based detection method
Martin Latterich and Jacques Corbeil
Proteome Sci. 2008; 6: 31. Published online 2008 November 4. doi: 10.1186/1477-5956-6-31.
PMCID: PMC2588561
Review
Deciphering animal development through proteomics: requirements and prospects
Wolfgang E Reintsch and Craig A Mandato
Proteome Sci. 2008; 6: 21. Published online 2008 July 24. doi: 10.1186/1477-5956-6-21.
PMCID: PMC2516511
Research
Proteomic profile determination of autosomal aneuploidies by mass spectrometry on amniotic fluids
Alain Mange, Caroline Desmetz, Virginie Bellet, Nicolas Molinari, Thierry Maudelonde, and Jerome Solassol
Proteome Sci. 2008; 6: 1. Published online 2008 January 11. doi: 10.1186/1477-5956-6-1.
PMCID: PMC2248173
Proteome profiling of embryo chick retina
Mina Mizukami, Takashi Kanamoto, Nazariy Souchelnytskyi, and Yoshiaki Kiuchi
Proteome Sci. 2008; 6: 3. Published online 2008 January 22. doi: 10.1186/1477-5956-6-3.
PMCID: PMC2267454
Automated production of recombinant human proteins as resource for proteome research
Thorsten Kohl, Christian Schmidt, Stefan Wiemann, Annemarie Poustka, and Ulrike Korf
Proteome Sci. 2008; 6: 4. Published online 2008 January 28. doi: 10.1186/1477-5956-6-4.
PMCID: PMC2266735
Early antibody response against Mycobacterium avium subspecies paratuberculosis antigens in subclinical cattle
John P Bannantine, Darrell O Bayles, W Ray Waters, Mitchell V Palmer, Judith R Stabel, and Michael L Paustian
Proteome Sci. 2008; 6: 5. Published online 2008 January 28. doi: 10.1186/1477-5956-6-5.
PMCID: PMC2265687
Proteomic profiling of endorepellin angiostatic activity on human endothelial cells
Jason J Zoeller and Renato V Iozzo
Proteome Sci. 2008; 6: 7. Published online 2008 February 12. doi: 10.1186/1477-5956-6-7.
PMCID: PMC2275231
Proteome analysis of human substantia nigra in Parkinson's disease
Cornelius J Werner, Roland Heyny-von Haussen, Gerhard Mall, and Sabine Wolf
Proteome Sci. 2008; 6: 8. Published online 2008 February 14. doi: 10.1186/1477-5956-6-8.
PMCID: PMC2265686
Peptides OFFGEL electrophoresis: a suitable pre-analytical step for complex eukaryotic samples fractionation compatible with quantitative iTRAQ labeling
Jérôme Chenau, Sylvie Michelland, Jonathan Sidibe, and Michel Seve
Proteome Sci. 2008; 6: 9. Published online 2008 February 26. doi: 10.1186/1477-5956-6-9.
PMCID: PMC2277393
Detection and identification of NAP-2 as a biomarker in hepatitis B-related hepatocellular carcinoma by proteomic approach
Min He, Jian Qin, Rihong Zhai, Xiao Wei, Qi Wang, Minhua Rong, Zhihua Jiang, Yuanjiao Huang, and Zhiyong Zhang
Proteome Sci. 2008; 6: 10. Published online 2008 March 10. doi: 10.1186/1477-5956-6-10.
PMCID: PMC2275230
Proteomic analysis of the EhV-86 virion
Michael J Allen, Julie A Howard, Kathryn S Lilley, and William H Wilson
Proteome Sci. 2008; 6: 11. Published online 2008 March 17. doi: 10.1186/1477-5956-6-11.
PMCID: PMC2322966
Proteome of monocyte priming by lipopolysaccharide, including changes in interleukin-1beta and leukocyte elastase inhibitor
Michael J Pabst, Karen M Pabst, David B Handsman, Sarka Beranova-Giorgianni, and Francesco Giorgianni
Proteome Sci. 2008; 6: 13. Published online 2008 May 20. doi: 10.1186/1477-5956-6-13.
PMCID: PMC2413206
Proteomic changes in rat hippocampus and adrenals following short-term sleep deprivation
Jean-Etienne Poirrier, François Guillonneau, Jenny Renaut, Kjell Sergeant, Andre Luxen, Pierre Maquet, and Pierre Leprince
Proteome Sci. 2008; 6: 14. Published online 2008 May 22. doi: 10.1186/1477-5956-6-14.
PMCID: PMC2453108
Comprehensive analysis of the mouse renal cortex using two-dimensional HPLC – tandem mass spectrometry
Yingxin Zhao, Larry Denner, Sigmund J Haidacher, Wanda S LeJeune, and Ronald G Tilton
Proteome Sci. 2008; 6: 15. Published online 2008 May 23. doi: 10.1186/1477-5956-6-15.
PMCID: PMC2412861
Pooling serum samples may lead to loss of potential biomarkers in SELDI-ToF MS proteomic profiling
S Tariq Sadiq and Dan Agranoff
Proteome Sci. 2008; 6: 16. Published online 2008 June 1. doi: 10.1186/1477-5956-6-16.
PMCID: PMC2414484
Protein profiling of the dimorphic, pathogenic fungus, Penicillium marneffei
Julie M Chandler, Erin R Treece, Heather R Trenary, Jessica L Brenneman, Tressa J Flickner, Jonathan L Frommelt, Zaw M Oo, Megan M Patterson, William T Rundle, Olga V Valle, Thomas D Kim, Gary R Walker, and Chester R Cooper, Jr
Proteome Sci. 2008; 6: 17. Published online 2008 June 4. doi: 10.1186/1477-5956-6-17.
PMCID: PMC2478645
Identification of differentially expressed proteins in spontaneous thymic lymphomas from knockout mice with deletion of p53
Bent Honoré, Søren Buus, and Mogens H Claësson
Proteome Sci. 2008; 6: 18. Published online 2008 June 10. doi: 10.1186/1477-5956-6-18.
PMCID: PMC2491604
Proteomic profiling of urine for the detection of colon cancer
Douglas G Ward, Stephen Nyangoma, Howard Joy, Emma Hamilton, Wenbin Wei, Chris Tselepis, Neil Steven, Michael JO Wakelam, Philip J Johnson, Tariq Ismail, and Ashley Martin
Proteome Sci. 2008; 6: 19. Published online 2008 June 16. doi: 10.1186/1477-5956-6-19.
PMCID: PMC2440369
Profiling of serum and tissue high abundance acute-phase proteins of patients with epithelial and germ line ovarian carcinoma
Yeng Chen, Boon-Kiong Lim, Suat-Cheng Peh, Puteri Shafinaz Abdul-Rahman, and Onn Haji Hashim
Proteome Sci. 2008; 6: 20. Published online 2008 July 18. doi: 10.1186/1477-5956-6-20.
PMCID: PMC2496906
The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes
Karlheinz Mann, Albert J Poustka, and Matthias Mann
Proteome Sci. 2008; 6: 22. Published online 2008 August 11. doi: 10.1186/1477-5956-6-22.
PMCID: PMC2527298
The identification of disease-induced biomarkers in the urine of BSE infected cattle
Sharon LR Simon, Lise Lamoureux, Margot Plews, Michael Stobart, Jillian LeMaistre, Ute Ziegler, Catherine Graham, Stefanie Czub, Martin Groschup, and J David Knox
Proteome Sci. 2008; 6: 23. Published online 2008 September 5. doi: 10.1186/1477-5956-6-23.
PMCID: PMC2546380
Trypanosoma cruzi alkaline 2-DE: Optimization and application to comparative proteome analysis of flagellate life stages
Adriana D Magalhães, Sébastien Charneau, Jaime Paba, Rafael AP Guércio, Antonio RL Teixeira, Jaime M Santana, Marcelo V Sousa, and Carlos AO Ricart
Proteome Sci. 2008; 6: 24. Published online 2008 September 8. doi: 10.1186/1477-5956-6-24.
PMCID: PMC2553069
A simple and reliable protocol for mouse serum proteome profiling studies by use of two-dimensional electrophoresis and MALDI TOF/TOF mass spectrometry
Maria Stella Ritorto and Jürgen Borlak
Proteome Sci. 2008; 6: 25. Published online 2008 September 12. doi: 10.1186/1477-5956-6-25.
PMCID: PMC2563006
Improved proteome coverage by using iTRAQ labelling and peptide OFFGEL fractionation
Emilie Ernoult, Erick Gamelin, and Catherine Guette
Proteome Sci. 2008; 6: 27. Published online 2008 October 13. doi: 10.1186/1477-5956-6-27.
PMCID: PMC2572582
SELDI-TOF-MS determination of hepcidin in clinical samples using stable isotope labelled hepcidin as an internal standard
Douglas G Ward, Keith Roberts, Paul Stonelake, Patrick Goon, Cleidiane G Zampronio, Ashley Martin, Philip J Johnson, Tariq Iqbal, and Chris Tselepis
Proteome Sci. 2008; 6: 28. Published online 2008 October 14. doi: 10.1186/1477-5956-6-28.
PMCID: PMC2571088
Dramatic down-regulation of oxidoreductases in human hepatocellular carcinoma hepG2 cells: proteomics and gene ontology unveiling new frontiers in cancer enzymology
Lambert CM Ngoka
Proteome Sci. 2008; 6: 29. Published online 2008 October 24. doi: 10.1186/1477-5956-6-29.
PMCID: PMC2614416
Sample prep for proteomics of breast cancer: proteomics and gene ontology reveal dramatic differences in protein solubilization preferences of radioimmunoprecipitation assay and urea lysis buffers
Lambert CM Ngoka
Proteome Sci. 2008; 6: 30. Published online 2008 October 24. doi: 10.1186/1477-5956-6-30.
PMCID: PMC2600628
High throughput protein-protein interaction data: clues for the architecture of protein complexes
James R Krycer, Chi Nam Ignatius Pang, and Marc R Wilkins
Proteome Sci. 2008; 6: 32. Published online 2008 November 26. doi: 10.1186/1477-5956-6-32.
PMCID: PMC2621150
In-depth, high-accuracy proteomics of sea urchin tooth organic matrix
Karlheinz Mann, Albert J Poustka, and Matthias Mann
Proteome Sci. 2008; 6: 33. Published online 2008 December 9. doi: 10.1186/1477-5956-6-33.
PMCID: PMC2614417
A proteomic approach identified growth hormone-dependent nutrition markers in children with idiopathic short stature
Gunnel Hellgren, Björn Andersson, Andreas FM Nierop, Jovanna Dahlgren, Ze'ev Hochberg, and Kerstin Albertsson-Wikland
Proteome Sci. 2008; 6: 35. Published online 2008 December 11. doi: 10.1186/1477-5956-6-35.
PMCID: PMC2621149
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