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Volume 2;  2007
Brief Report
OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences
Guozhen Liu, Monica Uddin, Munirul Islam, Morris Goodman, Lawrence I Grossman, Roberto Romero, and Derek E Wildman
Source Code Biol Med. 2007; 2: 5. Published online 2007 September 18. doi: 10.1186/1751-0473-2-5.
PMCID: PMC2093931
Methodology
PatentMatrix: an automated tool to survey patents related to large sets of genes or proteins
Armin Lahm and Emanuele de Rinaldis
Source Code Biol Med. 2007; 2: 4. Published online 2007 September 6. doi: 10.1186/1751-0473-2-4.
PMCID: PMC2025596
NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks
Erich J Baker, Guan N Lin, Huadong Liu, and Ravi Kosuri
Source Code Biol Med. 2007; 2: 8. Published online 2007 November 26. doi: 10.1186/1751-0473-2-8.
PMCID: PMC2211279
Research
Genome display tool: visualizing features in complex data sets
Lalitha Viswanath, Yue Lu, and George E Fox
Source Code Biol Med. 2007; 2: 1. Published online 2007 February 14. doi: 10.1186/1751-0473-2-1.
PMCID: PMC1805442
Pspace: a program that assesses protein space
Mihaly Mezei and Ming-Ming Zhou
Source Code Biol Med. 2007; 2: 6. Published online 2007 October 23. doi: 10.1186/1751-0473-2-6.
PMCID: PMC2231351
Bioinformatics process management: information flow via a computational journal
Lance Feagan, Justin Rohrer, Alexander Garrett, Heather Amthauer, Ed Komp, David Johnson, Adam Hock, Terry Clark, Gerald Lushington, Gary Minden, and Victor Frost
Source Code Biol Med. 2007; 2: 9. Published online 2007 December 3. doi: 10.1186/1751-0473-2-9.
PMCID: PMC2228283
Software Reviews
HitKeeper, a generic software package for hit list management
Jörg Hau, Michael Muller, and Marco Pagni
Source Code Biol Med. 2007; 2: 2. Published online 2007 March 28. doi: 10.1186/1751-0473-2-2.
PMCID: PMC1852800
The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures
Alessio Ceroni, Anne Dell, and Stuart M Haslam
Source Code Biol Med. 2007; 2: 3. Published online 2007 August 7. doi: 10.1186/1751-0473-2-3.
PMCID: PMC1994674
TreeViewJ: An application for viewing and analyzing phylogenetic trees
Matthew W Peterson and Marc E Colosimo
Source Code Biol Med. 2007; 2: 7. Published online 2007 October 31. doi: 10.1186/1751-0473-2-7.
PMCID: PMC2170439
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