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Volume 101(48);  November 30, 2004
Commentaries
Is knowing always feeling?
Alan G. Sanfey and Jonathan D. Cohen
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16709–16710. Published online 2004 November 22. doi: 10.1073/pnas.0407200101.
PMCID: PMC534737
Postmenopausal osteoporosis, T cells, and immune dysfunction
Steven L. Teitelbaum
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16711–16712. Published online 2004 November 22. doi: 10.1073/pnas.0407335101.
PMCID: PMC534741
Shifting paradigms: Herbivory and body size in lizards
Laurie J. Vitt
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16713–16714. Published online 2004 November 22. doi: 10.1073/pnas.0407439101.
PMCID: PMC534748
Physical Sciences
Applied Mathematics
The organization of orientation and spatial frequency in primary visual cortex
Lawrence Sirovich and Robert Uglesich
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16941–16946. Published online 2004 November 18. doi: 10.1073/pnas.0407450101.
PMCID: PMC534713
Chemistry
From the Cover:
A small-molecule switch for Golgi sulfotransferases
Christopher L. de Graffenried, Scott T. Laughlin, Jennifer J. Kohler, and Carolyn R. Bertozzi
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16715–16720. Published online 2004 November 17. doi: 10.1073/pnas.0403681101.
PMCID: PMC534710
Compound library development guided by protein structure similarity clustering and natural product structure
Marcus A. Koch, Lars-Oliver Wittenberg, Sudipta Basu, Duraiswamy A. Jeyaraj, Eleni Gourzoulidou, Kerstin Reinecke, Alex Odermatt, and Herbert Waldmann
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16721–16726. Published online 2004 November 17. doi: 10.1073/pnas.0404719101.
PMCID: PMC534721
Synthesis of galmic: A nonpeptide galanin receptor agonist
Susana Conde Ceide, Laurent Trembleau, Gebhard Haberhauer, Laszlo Somogyi, Xiaoying Lu, Tamas Bartfai, and Julius Rebek, Jr.
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16727–16732. Published online 2004 November 19. doi: 10.1073/pnas.0407543101.
PMCID: PMC534730
Recycling Frank: Spontaneous emergence of homochirality in noncatalytic systems
Raphaël Plasson, Hugues Bersini, and Auguste Commeyras
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16733–16738. Published online 2004 November 17. doi: 10.1073/pnas.0405293101.
PMCID: PMC534711
Statistics
Linkage analysis of ordinal traits for pedigree data
Rui Feng, James F. Leckman, and Heping Zhang
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16739–16744. Published online 2004 November 17. doi: 10.1073/pnas.0404623101.
PMCID: PMC534720
Biological Sciences
Applied Biological Sciences
Evolution of new nonantibody proteins via iterative somatic hypermutation
Lei Wang, W. Coyt Jackson, Paul A. Steinbach, and Roger Y. Tsien
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16745–16749. Published online 2004 November 19. doi: 10.1073/pnas.0407752101.
PMCID: PMC529417
Biochemistry
Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex
Steven L. Kazmirski, Marjetka Podobnik, Tanya F. Weitze, Mike O'Donnell, and John Kuriyan
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16750–16755. Published online 2004 November 19. doi: 10.1073/pnas.0407904101.
PMCID: PMC529418
Evidence that translocation of anthrax toxin's lethal factor is initiated by entry of its N terminus into the protective antigen channel
Sen Zhang, Alan Finkelstein, and R. John Collier
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16756–16761. Published online 2004 November 17. doi: 10.1073/pnas.0405754101.
PMCID: PMC534726
The human Rad9–Rad1–Hus1 checkpoint complex stimulates flap endonuclease 1
Wensheng Wang, Patrick Brandt, Marie L. Rossi, Laura Lindsey-Boltz, Vladimir Podust, Ellen Fanning, Aziz Sancar, and Robert A. Bambara
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16762–16767. Published online 2004 November 19. doi: 10.1073/pnas.0407686101.
PMCID: PMC534749
Inhibition of vascular endothelial growth factor with a sequence-specific hypoxia response element antagonist
Bogdan Z. Olenyuk, Guo-Jun Zhang, Jeffery M. Klco, Nicholas G. Nickols, William G. Kaelin, Jr., and Peter B. Dervan
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16768–16773. Published online 2004 November 19. doi: 10.1073/pnas.0407617101.
PMCID: PMC534742
On the mechanism and biology of cytochrome oxidase inhibition by nitric oxide
Fernando Antunes, Alberto Boveris, and Enrique Cadenas
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16774–16779. Published online 2004 November 16. doi: 10.1073/pnas.0405368101.
PMCID: PMC534717
Biophysics
Prediction of the structural motifs of sandwich proteins
A. S. Fokas, I. M. Gelfand, and A. E. Kister
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16780–16783. Published online 2004 November 18. doi: 10.1073/pnas.0407570101.
PMCID: PMC534733
Running on water: Three-dimensional force generation by basilisk lizards
S. Tonia Hsieh and George V. Lauder
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16784–16788. Published online 2004 November 18. doi: 10.1073/pnas.0405736101.
PMCID: PMC534722
Halogen bonds in biological molecules
Pascal Auffinger, Franklin A. Hays, Eric Westhof, and P. Shing Ho
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16789–16794. Published online 2004 November 19. doi: 10.1073/pnas.0407607101.
PMCID: PMC529416
Cell Biology
From the Cover:
Defective lysosomal exocytosis and plasma membrane repair in Chediak–Higashi/beige cells
Chau Huynh, Doris Roth, Diane M. Ward, Jerry Kaplan, and Norma W. Andrews
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16795–16800. Published online 2004 November 22. doi: 10.1073/pnas.0405905101.
PMCID: PMC534728
Reversible transdifferentiation of secretory epithelial cells into adipocytes in the mammary gland
Manrico Morroni, Antonio Giordano, Maria Cristina Zingaretti, Romina Boiani, Rita De Matteis, Barbara B. Kahn, Enzo Nisoli, Cristina Tonello, Catalina Pisoschi, Michele M. Luchetti, Mariella Marelli, and Saverio Cinti
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16801–16806. Published online 2004 November 19. doi: 10.1073/pnas.0407647101.
PMCID: PMC534744
Sarcolipin retention in the endoplasmic reticulum depends on its C-terminal RSYQY sequence and its interaction with sarco(endo)plasmic Ca2+-ATPases
Anthony O. Gramolini, Thomas Kislinger, Michio Asahi, Wenping Li, Andrew Emili, and David H. MacLennan
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16807–16812. Published online 2004 November 19. doi: 10.1073/pnas.0407815101.
PMCID: PMC534750
Bv8 and endocrine gland-derived vascular endothelial growth factor stimulate hematopoiesis and hematopoietic cell mobilization
Jennifer LeCouter, Constance Zlot, Max Tejada, Franklin Peale, and Napoleone Ferrara
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16813–16818. Published online 2004 November 17. doi: 10.1073/pnas.0407697101.
PMCID: PMC528996
Evolution
From the Cover:
Recurrent evolution of herbivory in small, cold-climate lizards: Breaking the ecophysiological rules of reptilian herbivory
Robert E. Espinoza, John J. Wiens, and C. Richard Tracy
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16819–16824. Published online 2004 November 18. doi: 10.1073/pnas.0401226101.
PMCID: PMC534712
Coding sequences of functioning human genes derived entirely from mobile element sequences
Roy J. Britten
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16825–16830. Published online 2004 November 16. doi: 10.1073/pnas.0406985101.
PMCID: PMC534736
Genetics
dsu functions in a MYO5A-independent pathway to suppress the coat color of dilute mice
T. Norene O'Sullivan, Xufeng S. Wu, Rivka A. Rachel, Jiang-Dong Huang, Deborah A. Swing, Lydia E. Matesic, John A. Hammer, III, Neal G. Copeland, and Nancy A. Jenkins
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16831–16836. Published online 2004 November 18. doi: 10.1073/pnas.0407339101.
PMCID: PMC534743
Discovery of functional noncoding elements by digital analysis of chromatin structure
Peter J. Sabo, Michael Hawrylycz, James C. Wallace, Richard Humbert, Man Yu, Anthony Shafer, Janelle Kawamoto, Robert Hall, Joshua Mack, Michael O. Dorschner, Michael McArthur, and John A. Stamatoyannopoulos
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16837–16842. Published online 2004 November 18. doi: 10.1073/pnas.0407387101.
PMCID: PMC534745
Changes in genomewide occupancy of core transcriptional regulators during heat stress
Sara J. Zanton and B. Franklin Pugh
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16843–16848. Published online 2004 November 17. doi: 10.1073/pnas.0404988101.
PMCID: PMC534727
A gene encoding a putative FAD-dependent l-2-hydroxyglutarate dehydrogenase is mutated in l-2-hydroxyglutaric aciduria
Rim Rzem, Maria Veiga-da-Cunha, Gaëtane Noël, Sophie Goffette, Marie-Cécile Nassogne, Brahim Tabarki, Christina Schöller, Thorsten Marquardt, Miikka Vikkula, and Emile Van Schaftingen
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16849–16854. Published online 2004 November 17. doi: 10.1073/pnas.0404840101.
PMCID: PMC534725
GC/AT-content spikes as genomic punctuation marks
Lingang Zhang, Simon Kasif, Charles R. Cantor, and Natalia E. Broude
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16855–16860. Published online 2004 November 17. doi: 10.1073/pnas.0407821101.
PMCID: PMC534751
Differentiation-induced replication-timing changes are restricted to AT-rich/long interspersed nuclear element (LINE)-rich isochores
Ichiro Hiratani, Amanda Leskovar, and David M. Gilbert
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16861–16866. Published online 2004 November 19. doi: 10.1073/pnas.0406687101.
PMCID: PMC534734
Immunology
Solution structure of the CD3εδ ectodomain and comparison with CD3εγ as a basis for modeling T cell receptor topology and signaling
Zhen-Yu J. Sun, Sun Taek Kim, Il Chul Kim, Amr Fahmy, Ellis L. Reinherz, and Gerhard Wagner
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16867–16872. Published online 2004 November 19. doi: 10.1073/pnas.0407576101.
PMCID: PMC534738
Human and murine inhibitory natural killer cell receptors transfer from natural killer cells to target cells
Bruno Vanherberghen, Katja Andersson, Leo M. Carlin, Esther N. M. Nolte-`t Hoen, Geoffrey S. Williams, Petter Höglund, and Daniel M. Davis
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16873–16878. Published online 2004 November 18. doi: 10.1073/pnas.0406240101.
PMCID: PMC534731
Activation of the complement system generates antibacterial peptides
Emma Andersson Nordahl, Victoria Rydengård, Patrik Nyberg, D. Patric Nitsche, Matthias Mörgelin, Martin Malmsten, Lars Björck, and Artur Schmidtchen
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16879–16884. Published online 2004 November 18. doi: 10.1073/pnas.0406678101.
PMCID: PMC534732
The molecular program induced in T cells undergoing homeostatic proliferation
Ananda W. Goldrath, C. John Luckey, Richard Park, Christophe Benoist, and Diane Mathis
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16885–16890. Published online 2004 November 17. doi: 10.1073/pnas.0407417101.
PMCID: PMC534746
Medical Sciences
Transplanted human bone marrow contributes to vascular endothelium
Shuguang Jiang, Luke Walker, Michael Afentoulis, Daniel A. Anderson, Linda Jauron-Mills, Christopher L. Corless, and William H. Fleming
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16891–16896. Published online 2004 November 17. doi: 10.1073/pnas.0404398101.
PMCID: PMC534718
SMAC/Diablo-dependent apoptosis induced by nonsteroidal antiinflammatory drugs (NSAIDs) in colon cancer cells
Manu Kohli, Jian Yu, Craig Seaman, Alberto Bardelli, Kenneth W. Kinzler, Bert Vogelstein, Christoph Lengauer, and Lin Zhang
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16897–16902. Published online 2004 November 19. doi: 10.1073/pnas.0403405101.
PMCID: PMC534714
From the Cover:
Correction of kinetic and stability defects by tetrahydrobiopterin in phenylketonuria patients with certain phenylalanine hydroxylase mutations
Heidi Erlandsen, Angel L. Pey, Alejandra Gámez, Belén Pérez, Lourdes R. Desviat, Cristina Aguado, Richard Koch, Sankar Surendran, Stephen Tyring, Reuben Matalon, Charles R. Scriver, Magdalena Ugarte, Aurora Martínez, and Raymond C. Stevens
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16903–16908. Published online 2004 November 19. doi: 10.1073/pnas.0407256101.
PMCID: PMC534739
Bioluminescent imaging of a marking transgene and correction of Fabry mice by neonatal injection of recombinant lentiviral vectors
Makoto Yoshimitsu, Takeya Sato, Kesheng Tao, Jagdeep S. Walia, Vanessa I. Rasaiah, Gillian T. Sleep, Gary J. Murray, Armando G. Poeppl, John Underwood, Lori West, Roscoe O. Brady, and Jeffrey A. Medin
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16909–16914. Published online 2004 November 18. doi: 10.1073/pnas.0407572101.
PMCID: PMC534735
Dynamical resonance can account for seasonality of influenza epidemics
Jonathan Dushoff, Joshua B. Plotkin, Simon A. Levin, and David J. D. Earn
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16915–16916. Published online 2004 November 19. doi: 10.1073/pnas.0407293101.
PMCID: PMC534740
Microbiology
Interspecies communication in Streptococcus gordonii–Veillonella atypica biofilms: Signaling in flow conditions requires juxtaposition
Paul G. Egland, Robert J. Palmer, Jr., and Paul E. Kolenbrander
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16917–16922. Published online 2004 November 16. doi: 10.1073/pnas.0407457101.
PMCID: PMC534724
From the Cover:
Metastability of Helicobacter pylori bab adhesin genes and dynamics in Lewis b antigen binding
Anna Bäckström, Carina Lundberg, Dangeruta Kersulyte, Douglas E. Berg, Thomas Borén, and Anna Arnqvist
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16923–16928. Published online 2004 November 19. doi: 10.1073/pnas.0404817101.
PMCID: PMC534723
Anaerobic growth of Methanosarcina acetivorans C2A on carbon monoxide: An unusual way of life for a methanogenic archaeon
Michael Rother and William W. Metcalf
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16929–16934. Published online 2004 November 18. doi: 10.1073/pnas.0407486101.
PMCID: PMC529327
Neuroscience
Experimental test of the birdsong error-correction model
Anthony Leonardo
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16935–16940. Published online 2004 November 22. doi: 10.1073/pnas.0407870101.
PMCID: PMC534752
The organization of orientation and spatial frequency in primary visual cortex
Lawrence Sirovich and Robert Uglesich
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16941–16946. Published online 2004 November 18. doi: 10.1073/pnas.0407450101.
PMCID: PMC534713
Perceptual deficits in patients with impaired recognition of biological motion after temporal lobe lesions
Lucia M. Vaina and Charles G. Gross
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16947–16951. Published online 2004 November 19. doi: 10.1073/pnas.0407668101.
PMCID: PMC534747
Ca2+ activity at GABAB receptors constitutively promotes metabotropic glutamate signaling in the absence of GABA
Toshihide Tabata, Kenji Araishi, Kouichi Hashimoto, Yuki Hashimotodani, Herman van der Putten, Bernhard Bettler, and Masanobu Kano
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16952–16957. Published online 2004 November 18. doi: 10.1073/pnas.0405387101.
PMCID: PMC529326
Pharmacology
Differential nitros(yl)ation of blood and tissue constituents during glyceryl trinitrate biotransformation in vivo
David R. Janero, Nathan S. Bryan, Fumito Saijo, Vijay Dhawan, David J. Schwalb, Michael C. Warren, and Martin Feelisch
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16958–16963. Published online 2004 November 18. doi: 10.1073/pnas.0406075101.
PMCID: PMC534729
Function recovery after chemobleaching (FRAC): Evidence for activity silent membrane receptors on cell surface
Haiyan Sun, Sojin Shikano, Qiaojie Xiong, and Min Li
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16964–16969. Published online 2004 November 17. doi: 10.1073/pnas.0404178101.
PMCID: PMC534715
Physiology
Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate
Andrew Y. Gracey, E. Jane Fraser, Weizhong Li, Yongxiang Fang, Ruth R. Taylor, Jane Rogers, Andrew Brass, and Andrew R. Cossins
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16970–16975. Published online 2004 November 18. doi: 10.1073/pnas.0403627101.
PMCID: PMC534716
Plant Biology
A highly specific l-galactose-1-phosphate phosphatase on the path to ascorbate biosynthesis
William A. Laing, Sean Bulley, Michele Wright, Janine Cooney, Dwayne Jensen, Di Barraclough, and Elspeth MacRae
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16976–16981. Published online 2004 November 18. doi: 10.1073/pnas.0407453101.
PMCID: PMC534719
Correction
Proc Natl Acad Sci U S A. 2004 November 30; 101(48): 16982. Published online 2004 November 10. doi: 10.1073/pnas.0408040101.
PMCID: PMC534753
Corrects: Chih-Hung Lai, et al. Correction of ATM gene function by aminoglycoside-induced read-through of premature termination codons. Proc Natl Acad Sci U S A. 2004 November 2; 101(44): 15676–15681.
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