| | Other Issues: previous | next | latest | archiveResearch Articles A direct repeat of E-box-like elements is required for cell-autonomous circadian rhythm of clock genes Yasukazu Nakahata, Mayumi Yoshida, Atsuko Takano, Haruhiko Soma, Takuro Yamamoto, Akio Yasuda, Toru Nakatsu, and Toru Takumi PMCID: PMC2254435 Specificity of DNA-binding by the FAX-1 and NHR-67 nuclear receptors of Caenorhabditis elegans is partially mediated via a subclass-specific P-box residue Stephen D DeMeo, Rebecca M Lombel, Melissa Cronin, Eric L Smith, Danielle R Snowflack, Kristy Reinert, Sheila Clever, and Bruce Wightman PMCID: PMC2225407 The Paf1 complex promotes displacement of histones upon rapid induction of transcription by RNA polymerase II Heather A Marton and Stephen Desiderio PMCID: PMC2265735 Regulation of mouse Scgb3a1 gene expression by NF-Y and association of CpG methylation with its tissue-specific expression Takeshi Tomita and Shioko Kimura PMCID: PMC2266941 Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis Hailing Jin, Vladimir Vacic, Thomas Girke, Stefano Lonardi, and Jian-Kang Zhu PMCID: PMC2262095 Substrate specificity of new methyl-directed DNA endonuclease GlaI Galina V Tarasova, Tatiana N Nayakshina, and Sergey KH Degtyarev PMCID: PMC2257971 The human SIN3B corepressor forms a nucleolar complex with leukemia-associated ETO homologues Rakesh Singh Dhanda, Sofia Rondin Lindberg, and Inge Olsson PMCID: PMC2266940 Selection and validation of a set of reliable reference genes for quantitative sod gene expression analysis in C. elegans David Hoogewijs, Koen Houthoofd, Filip Matthijssens, Jo Vandesompele, and Jacques R Vanfleteren PMCID: PMC2254638 Alternative splicing and differential subcellular localization of the rat FGF antisense gene product Shuo Cheng Zhang, Kimberley A MacDonald, Mark Baguma-Nibasheka, Laurette Geldenhuys, Alan G Casson, and Paul R Murphy PMCID: PMC2254637 Ror2 modulates the canonical Wnt signaling in lung epithelial cells through cooperation with Fzd2 Changgong Li, Hongyan Chen, Lingyan Hu, Yiming Xing, Tomoyo Sasaki, Maria F Villosis, John Li, Michiru Nishita, Yasuhiro Minami, and Parviz Minoo PMCID: PMC2254434 Differential regulation of the two transcriptional activation domains of the coiled-coil coactivator CoCoA by sumoylation Catherine K Yang, Jeong Hoon Kim, David K Ann, and Michael R Stallcup PMCID: PMC2263068 Analysis of the transcriptional activity of endogenous NFAT5 in primary cells using transgenic NFAT-luciferase reporter mice Beatriz Morancho, Jordi Minguillón, Jeffery D Molkentin, Cristina López-Rodríguez, and Jose Aramburu PMCID: PMC2262899 Simultaneous targeted exchange of two nucleotides by single-stranded oligonucleotides clusters within a region of about fourteen nucleotides Heike Hegele, Matthias Wuepping, Caroline Ref, Oliver Kenner, and Dieter Kaufmann PMCID: PMC2266939 Iron-dependent degradation of IRP2 requires its C-terminal region and IRP structural integrity Jian Wang, Guohua Chen, Julie Lee, and Kostas Pantopoulos PMCID: PMC2267205 Expression of yeast lipid phosphatase Sac1p is regulated by phosphatidylinositol-4-phosphate Andreas Knödler, Gerlinde Konrad, and Peter Mayinger PMCID: PMC2258305 Reference genes for normalization of gene expression studies in human osteoarthritic articular cartilage Manuel Pombo-Suarez, Manuel Calaza, Juan J Gomez-Reino, and Antonio Gonzalez PMCID: PMC2248200 Housekeeping genes for quantitative expression studies in the three-spined stickleback Gasterosteus aculeatus Sascha Hibbeler, Joern P Scharsack, and Sven Becker PMCID: PMC2254436 Molecular characterization and expression analysis of five different elongation factor 1 alpha genes in the flatfish Senegalese sole (Solea senegalensis Kaup): Differential gene expression and thyroid hormones dependence during metamorphosis Carlos Infante, Esther Asensio, José Pedro Cañavate, and Manuel Manchado PMCID: PMC2270864 Comparative genomic analysis of the arthropod muscle myosin heavy chain genes allows ancestral gene reconstruction and reveals a new type of 'partially' processed pseudogene Florian Odronitz and Martin Kollmar PMCID: PMC2257972 A novel mutant of the Sup35 protein of Saccharomyces cerevisiae defective in translation termination and in GTPase activity still supports cell viability Céline Fabret, Bruno Cosnier, Sergey Lekomtsev, Sylvie Gillet, Isabelle Hatin, Pierre Le Maréchal, and Jean Pierre Rousset PMCID: PMC2259375 Ligand-induced sequestering of branchpoint sequence allows conditional control of splicing Dong-Suk Kim, Veronica Gusti, Kenneth J Dery, and Rajesh K Gaur PMCID: PMC2275289 hMMS2 serves a redundant role in human PCNA polyubiquitination Jan Brun, Roland Chiu, Katherine Lockhart, Wei Xiao, Bradly G Wouters, and Douglas A Gray PMCID: PMC2263069 The Mre11 protein interacts with both Rad50 and the HerA bipolar helicase and is recruited to DNA following gamma irradiation in the archaeon Sulfolobus acidocaldarius Achim Quaiser, Florence Constantinesco, Malcolm F White, Patrick Forterre, and Christiane Elie PMCID: PMC2288612 Characterization of human mesenchymal stem cell secretome at early steps of adipocyte and osteoblast differentiation Chiara Chiellini, Olivia Cochet, Luc Negroni, Michel Samson, Marjorie Poggi, Gérard Ailhaud, Marie-Christine Alessi, Christian Dani, and Ez-Zoubir Amri PMCID: PMC2279142 Essential and distinct roles of the F-box and helicase domains of Fbh1 in DNA damage repair Chikako Sakaguchi, Takashi Morishita, Hideo Shinagawa, and Takashi Hishida PMCID: PMC2294136 Selection of housekeeping genes for gene expression studies in larvae from flatfish using real-time PCR Carlos Infante, Makoto P Matsuoka, Esther Asensio, José Pedro Cañavate, Michael Reith, and Manuel Manchado PMCID: PMC2275743 Association of ATRX with pericentric heterochromatin and the Y chromosome of neonatal mouse spermatogonia Claudia Baumann, Anja Schmidtmann, Kathrin Muegge, and Rabindranath De La Fuente PMCID: PMC2275742 Characterization of the human DYRK1A promoter and its regulation by the transcription factor E2F1 Barbara Maenz, Paul Hekerman, Eva M Vela, Juan Galceran, and Walter Becker PMCID: PMC2292204 Novel forms of Paired-like homeodomain transcription factor 2 (PITX2): Generation by alternative translation initiation and mRNA splicing Pankaj Lamba, Tord A Hjalt, and Daniel J Bernard PMCID: PMC2330153 HMG-box domain stimulation of RAG1/2 cleavage activity is metal ion dependent Aleksei N Kriatchko, Serge Bergeron, and Patrick C Swanson PMCID: PMC2324110 The katG mRNA of Mycobacterium tuberculosis and Mycobacterium smegmatis is processed at its 5' end and is stabilized by both a polypurine sequence and translation initiation Claudia Sala, Francesca Forti, Francesca Magnoni, and Daniela Ghisotti PMCID: PMC2358910 Transcriptional profile of the homologous recombination machinery and characterization of the EhRAD51 recombinase in response to DNA damage in Entamoeba histolytica Mavil López-Casamichana, Esther Orozco, Laurence A Marchat, and César López-Camarillo PMCID: PMC2324109 Drosophila Uri, a PP1α binding protein, is essential for viability, maintenance of DNA integrity and normal transcriptional activity Jasmin Kirchner, Emese Vissi, Sascha Gross, Balazs Szoor, Andrey Rudenko, Luke Alphey, and Helen White-Cooper PMCID: PMC2346476 Gene transfer of Hodgkin cell lines via multivalent anti-CD30 scFv displaying bacteriophage Yoon-Suk A Chung, Katja Sabel, Martin Krönke, and Alexander Klimka PMCID: PMC2375901 The calcium channel β2 (CACNB2) subunit repertoire in teleosts Alicia M Ebert, Catherine A McAnelly, Ashok Srinivasan, Rachel Lockridge Mueller, David B Garrity, and Deborah M Garrity PMCID: PMC2365960 DNA demethylation-dependent enhancement of toll-like receptor-2 gene expression in cystic fibrosis epithelial cells involves SP1-activated transcription Takashi Furuta, Tsuyoshi Shuto, Shogo Shimasaki, Yuko Ohira, Mary Ann Suico, Dieter C Gruenert, and Hirofumi Kai PMCID: PMC2387165 DNA watermarks: A proof of concept Dominik Heider and Angelika Barnekow PMCID: PMC2375902 Interaction of circadian clock proteins PER2 and CRY with BMAL1 and CLOCK Sonja Langmesser, Tiziano Tallone, Alain Bordon, Sandro Rusconi, and Urs Albrecht PMCID: PMC2383916 Molecular characterization of senescence marker protein-30 gene promoter: Identification of repressor elements and functional nuclear factor binding sites Bandita Rath, Ravi S Pandey, Priya R Debata, Naoki Maruyama, and Prakash C Supakar PMCID: PMC2386801 A GATA4/WT1 cooperation regulates transcription of genes required for mammalian sex determination and differentiation Yoko Miyamoto, Hiroaki Taniguchi, Frédéric Hamel, David W Silversides, and Robert S Viger PMCID: PMC2387164 Characterization of two functional NKX3.1 binding sites upstream of the PCAN1 gene that are involved in the positive regulation of PCAN1 gene transcription Wenwen Liu, Pengju Zhang, Weiwen Chen, Chunxiao Yu, Fuai Cui, Feng Kong, Jianye Zhang, and Anli Jiang PMCID: PMC2390571 Identification of valid reference genes for the normalization of RT qPCR gene expression data in human brain tissue David TR Coulson, Simon Brockbank, Joseph G Quinn, Suzanne Murphy, Rivka Ravid, G Brent Irvine, and Janet A Johnston PMCID: PMC2396658 Distinct and stage specific nuclear factors regulate the expression of falcipains, Plasmodium falciparum cysteine proteases Sujatha Sunil, Virander S Chauhan, and Pawan Malhotra PMCID: PMC2409366 The BsaHI restriction-modification system: Cloning, sequencing and analysis of conserved motifs Robert K Neely and Richard J Roberts PMCID: PMC2413257 Exercise induced stress in horses: Selection of the most stable reference genes for quantitative RT-PCR normalization Katia Cappelli, Michela Felicetti, Stefano Capomaccio, Giacomo Spinsanti, Maurizio Silvestrelli, and Andrea Verini Supplizi PMCID: PMC2412902 Comparative in silico analysis identifies bona fide MyoD binding sites within the Myocyte Stress 1 gene promoter Samir Ounzain, Caroline S Dacwag, Nilesh J Samani, Anthony N Imbalzano, and Nelson W Chong PMCID: PMC2408591 Characterization and expression patterns of a membrane-bound trehalase from Spodoptera exigua Bin Tang, Xiaofei Chen, Yang Liu, Honggang Tian, Jian Liu, Jian Hu, Weihua Xu, and Wenqing Zhang PMCID: PMC2424068 IRES-mediated translation of the carboxy-terminal domain of the horizontal cell specific connexin Cx55.5 in vivo and in vitro Mahboob Ul-Hussain, Georg Zoidl, Jan Klooster, Maarten Kamermans, and Rolf Dermietzel PMCID: PMC2435236 Selection of reference genes for quantitative real-time PCR in a rat asphyxial cardiac arrest model Kristina Langnaese, Robin John, Hannes Schweizer, Uwe Ebmeyer, and Gerburg Keilhoff PMCID: PMC2430208 LTR retrotransposons and the evolution of dosage compensation in Drosophila Lilya V Matyunina, Nathan J Bowen, and John F McDonald PMCID: PMC2443393 Identification of a candidate alternative promoter region of the human Bcl2L11 (Bim) gene Margherita Gaviraghi, Andrea Caricasole, Chiara Costanzo, Daniela Diamanti, Mario Dandrea, Massimo Donadelli, Aldo Scarpa, and Marta Palmieri PMCID: PMC2442123 TATA binding protein associated factor 3 (TAF3) interacts with p53 and inhibits its function Orsolya Bereczki, Zsuzsanna Ujfaludi, Norbert Pardi, Zita Nagy, Laszlo Tora, Imre M Boros, and Eva Balint PMCID: PMC2441632 Systemic RNAi mediated gene silencing in the anhydrobiotic nematode Panagrolaimus superbus Adam J Shannon, Trevor Tyson, Ilona Dix, Jacqueline Boyd, and Ann M Burnell PMCID: PMC2453295 Validation of internal control for gene expression study in soybean by quantitative real-time PCR Bo Jian, Bin Liu, Yurong Bi, Wensheng Hou, Cunxiang Wu, and Tianfu Han PMCID: PMC2443375 Off-target effects of siRNA specific for GFP Cordula Tschuch, Angela Schulz, Armin Pscherer, Wiebke Werft, Axel Benner, Agnes Hotz-Wagenblatt, Leticia Serra Barrionuevo, Peter Lichter, and Daniel Mertens PMCID: PMC2443166 Phosphorylation at Ser473 regulates heterochromatin protein 1 binding and corepressor function of TIF1beta/KAP1 Chiung-Wen Chang, Han-Yi Chou, Yu-Sheng Lin, Kuo-Hsiang Huang, Ching-Jin Chang, Tsui-Chun Hsu, and Sheng-Chung Lee PMCID: PMC2474647 Housekeeping while brain's storming Validation of normalizing factors for gene expression studies in a murine model of traumatic brain injury Hervé Rhinn, Catherine Marchand-Leroux, Nicole Croci, Michel Plotkine, Daniel Scherman, and Virginie Escriou PMCID: PMC2500043 Quantification of mRNA in single cells and modelling of RT-qPCR induced noise Martin Bengtsson, Martin Hemberg, Patrik Rorsman, and Anders Ståhlberg PMCID: PMC2483285 Genomic actions of 1,25-dihydroxyvitamin D3 on insulin receptor gene expression, insulin receptor number and insulin activity in the kidney, liver and adipose tissue of streptozotocin-induced diabetic rats Consuelo Calle, Begoña Maestro, and Moisés García-Arencibia PMCID: PMC2533347 Statistical modelling of transcript profiles of differentially regulated genes Daniel C Eastwood, Andrew Mead, Martin J Sergeant, and Kerry S Burton PMCID: PMC2525656 Expression profiles of the pluripotency marker gene POU5F1 and validation of reference genes in rabbit oocytes and preimplantation stage embryos Solomon Mamo, Arpad Baji Gal, Zsuzsanna Polgar, and Andras Dinnyes PMCID: PMC2507718 Optical mapping discerns genome wide DNA methylation profiles Gene E Ananiev, Steve Goldstein, Rod Runnheim, Dan K Forrest, Shiguo Zhou, Konstantinos Potamousis, Chris P Churas, Veit Bergendahl, James A Thomson, and David C Schwartz PMCID: PMC2516518 PSMB2 and RPL32 are suitable denominators to normalize gene expression profiles in bronchoalveolar cells Eva Kriegova, Arsen Arakelyan, Regina Fillerova, Jaromir Zatloukal, Frantisek Mrazek, Zdenka Navratilova, Vitezslav Kolek, Roland M du Bois, and Martin Petrek PMCID: PMC2529339 In vivo analysis of Caenorhabditis elegans noncoding RNA promoter motifs Tiantian Li, Housheng He, Yunfei Wang, Haixia Zheng, Geir Skogerbø, and Runsheng Chen PMCID: PMC2527325 Analysis of the piggyBac transposase reveals a functional nuclear targeting signal in the 94 c-terminal residues James H Keith, Tresa S Fraser, and Malcolm J Fraser, Jr PMCID: PMC2532691 Mutational analysis of highly conserved aspartate residues essential to the catalytic core of the piggyBac transposase James H Keith, Cheryl A Schaeper, Tresa S Fraser, and Malcolm J Fraser, Jr PMCID: PMC2533014 Differential expression of the TFIIIB subunits Brf1 and Brf2 in cancer cells Stephanie Cabarcas, Joby Jacob, Ingrid Veras, and Laura Schramm PMCID: PMC2533013 Evaluation of suitable reference genes for gene expression studies in bovine muscular tissue Raquel Pérez, Isabel Tupac-Yupanqui, and Susana Dunner PMCID: PMC2561043 Sense and antisense OsDof12 transcripts in rice Dejun Li, Chunhua Yang, Xiaobing Li, Guobiao Ji, and Lihuang Zhu PMCID: PMC2576344 Regulation of expression of two LY-6 family genes by intron retention and transcription induced chimerism Vincenzo Calvanese, Meera Mallya, R Duncan Campbell, and Begoña Aguado PMCID: PMC2562388 Pioglitazone retrieves hepatic antioxidant DNA repair in a mice model of high fat diet Pi-Jung Hsiao, Tusty-Jiuan Hsieh, Kung-Kai Kuo, Wei-Wen Hung, Kun-Bow Tsai, Ching-Hsiu Yang, Ming-Lung Yu, and Shyi-Jang Shin PMCID: PMC2565677 Identification and characterization of CCAAT/Enhancer Binding proteindelta (C/EBPdelta) target genes in G0 growth arrested mammary epithelial cells Yingjie Zhang, Tong Liu, Pearlly Yan, Tim Huang, and Jim DeWille PMCID: PMC2576343 Mutant huntingtin activates Nrf2-responsive genes and impairs dopamine synthesis in a PC12 model of Huntington's disease Willeke MC van Roon-Mom, Barry A Pepers, Peter AC 't Hoen, Carola ACM Verwijmeren, Johan T den Dunnen, Josephine C Dorsman, and GertJan B van Ommen PMCID: PMC2588454 New insights into SRY regulation through identification of 5' conserved sequences Diana GF Ross, Josephine Bowles, Peter Koopman, and Sigrid Lehnert PMCID: PMC2572636 The orthologue of the "acatalytic" mammalian ART4 in chicken is an arginine-specific mono-ADP-ribosyltransferase Andreas Grahnert, Steffi Richter, Fritzi Siegert, Angela Berndt, and Sunna Hauschildt PMCID: PMC2576468 FIZ1 is part of the regulatory protein complex on active photoreceptor-specific gene promoters in vivo Raghuveer S Mali, Guang-Hua Peng, Xiao Zhang, Loan Dang, Shiming Chen, and Kenneth P Mitton PMCID: PMC2571102 Computational modeling and in silico analysis of differential regulation of myo-inositol catabolic enzymes in Cryptococcus neoformans Emalee A Mackenzie and Lisa S Klig PMCID: PMC2584100 Identifying intrinsic and extrinsic determinants that regulate internal initiation of translation mediated by the FMR1 5' leader Tara Dobson, Erika Kube, Stephanie Timmerman, and Les A Krushel PMCID: PMC2576346 Identification of two regulatory binding sites which confer myotube specific expression of the mono-ADP-ribosyltransferase ART1 gene Maik Friedrich, Levin Böhlig, Ralf D Kirschner, Kurt Engeland, and Sunna Hauschildt PMCID: PMC2575215 Characterization of the internal IRES element of the zebrafish connexin55.5 reveals functional implication of the polypyrimidine tract binding protein Mahboob Ul-Hussain, Rolf Dermietzel, and Georg Zoidl PMCID: PMC2579433 Novel RNA-binding properties of the MTG chromatin regulatory proteins Stefano Rossetti, Leontine van Unen, Nicoletta Sacchi, and Andre T Hoogeveen PMCID: PMC2579434 High-fidelity correction of genomic uracil by human mismatch repair activities Erik D Larson, David W Bednarski, and Nancy Maizels PMCID: PMC2606688 Complex organisation and structure of the ghrelin antisense strand gene GHRLOS, a candidate non-coding RNA gene Inge Seim, Shea L Carter, Adrian C Herington, and Lisa K Chopin PMCID: PMC2621237 Instability of standard PCR reference genes in adipose-derived stem cells during propagation, differentiation and hypoxic exposure Trine Fink, Pia Lund, Linda Pilgaard, Jeppe Grøndahl Rasmussen, Meg Duroux, and Vladimir Zachar PMCID: PMC2585587 Promoter Hypermethylation-mediated Inactivation of LRRC4 in Gliomas Zuping Zhang, Dan Li, Minghua Wu, Bo Xiang, Li Wang, Ming Zhou, Pan Chen, Xiaoling Li, Shourong Shen, and Guiyuan Li PMCID: PMC2588634 Control of replication initiation by the Sum1/Rfm1/Hst1 histone deacetylase Jan M Weber, Horst Irlbacher, and Ann E Ehrenhofer-Murray PMCID: PMC2585588 Characterization of housekeeping genes in zebrafish: male-female differences and effects of tissue type, developmental stage and chemical treatment Amy T McCurley and Gloria V Callard PMCID: PMC2588455 Identification of Importin 8 (IPO8) as the most accurate reference gene for the clinicopathological analysis of lung specimens Paul A Nguewa, Jackeline Agorreta, David Blanco, Maria Dolores Lozano, Javier Gomez-Roman, Blas A Sanchez, Iñaki Valles, Maria J Pajares, Ruben Pio, Maria Jose Rodriguez, Luis M Montuenga, and Alfonso Calvo PMCID: PMC2612021 The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals Rebecca S LaRue, Stefán R Jónsson, Kevin AT Silverstein, Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, Isidro Hötzel, Valgerdur Andrésdóttir, Timothy PL Smith, and Reuben S Harris PMCID: PMC2612020 Identification of phylogenetically conserved sequence motifs in microRNA 5' flanking sites from C. elegans and C. briggsae Liisa Heikkinen, Suvi Asikainen, and Garry Wong PMCID: PMC2613404 Two evolutionarily conserved sequence elements for Peg3/Usp29 transcription Jeong Do Kim, Sungryul Yu, Jung Ha Choo, and Joomyeong Kim PMCID: PMC2615030 Methodology Articles Preamplification techniques for real-time RT-PCR analyses of endomyocardial biopsies Michel Noutsias, Maria Rohde, Andrea Block, Katrin Klippert, Olga Lettau, Katja Blunert, Michael Hummel, Uwe Kühl, Hans Lehmkuhl, Roland Hetzer, Ursula Rauch, Wolfgang Poller, Matthias Pauschinger, Heinz P Schultheiss, Hans D Volk, and Katja Kotsch PMCID: PMC2262094 Use of the lambda Red recombinase system to rapidly generate mutants in Pseudomonas aeruginosa Biliana Lesic and Laurence G Rahme PMCID: PMC2287187 miR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample Soroush Sharbati-Tehrani, Barbara Kutz-Lohroff, Ramona Bergbauer, Jutta Scholven, and Ralf Einspanier PMCID: PMC2374797 Mutation detection using ENDO1: Application to disease diagnostics in humans and TILLING and Eco-TILLING in plants Karine Triques, Elodie Piednoir, Marion Dalmais, Julien Schmidt, Christine Le Signor, Mark Sharkey, Michel Caboche, Bénédicte Sturbois, and Abdelhafid Bendahmane PMCID: PMC2386800 A novel universal real-time PCR system using the attached universal duplex probes for quantitative analysis of nucleic acids Litao Yang, Wanqi Liang, Lingxi Jiang, Wenquan Li, Wei Cao, Zoe A Wilson, and Dabing Zhang PMCID: PMC2443376 Selection of housekeeping genes for gene expression studies in the adult rat submandibular gland under normal, inflamed, atrophic and regenerative states Nicholas Silver, Emanuele Cotroneo, Gordon Proctor, Samira Osailan, Katherine L Paterson, and Guy H Carpenter PMCID: PMC2492873 Efficient four fragment cloning for the construction of vectors for targeted gene replacement in filamentous fungi Rasmus JN Frandsen, Jens A Andersson, Matilde B Kristensen, and Henriette Giese PMCID: PMC2533011 Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus Aude Le Bail, Simon M Dittami, Pierre-Olivier de Franco, Sylvie Rousvoal, Mark J Cock, Thierry Tonon, and Bénédicte Charrier PMCID: PMC2546422 Identification of suitable endogenous control genes for microRNA gene expression analysis in human breast cancer Pamela A Davoren, Roisin E McNeill, Aoife J Lowery, Michael J Kerin, and Nicola Miller PMCID: PMC2533012 Phi29 polymerase based random amplification of viral RNA as an alternative to random RT-PCR Nicolas Berthet, Anita K Reinhardt, India Leclercq, Sven van Ooyen, Christophe Batéjat, Philip Dickinson, Rayna Stamboliyska, Iain G Old, Katherine A Kong, Laurent Dacheux, Hervé Bourhy, Giulia C Kennedy, Christian Korfhage, Stewart T Cole, and Jean-Claude Manuguerra PMCID: PMC2535778 Selection of internal reference genes for SYBR green qRT-PCR studies of rhesus monkey (Macaca mulatta) tissues Kung Ahn, Jae-Won Huh, Sang-Je Park, Dae-Soo Kim, Hong-Seok Ha, Yun-Ji Kim, Ja-Rang Lee, Kyu-Tae Chang, and Heui-Soo Kim PMCID: PMC2561044 Ectopic expression of a truncated CD40L protein from synthetic post-transcriptionally capped RNA in dendritic cells induces high levels of IL-12 secretion Irina Y Tcherepanova, Melissa D Adams, Xiaorong Feng, Atsushi Hinohara, Joe Horvatinovich, David Calderhead, Don Healey, and Charles A Nicolette PMCID: PMC2576345 Critical evaluation of methods used to determine amplification efficiency refutes the exponential character of real-time PCR Robert G Rutledge and Don Stewart PMCID: PMC2587475 Isolation of novel coregulatory protein networks associated with DNA-bound estrogen receptor alpha Jennifer R Schultz-Norton, Yvonne S Ziegler, Varsha S Likhite, John R Yates, and Ann M Nardulli PMCID: PMC2585101 Analysis of chromatin boundary activity in Drosophila cells Mo Li, Vladimir E Belozerov, and Haini N Cai PMCID: PMC2621236 |
