FLOSS
Description
The FLOSS software package uses input and output files from the MERLIN linkage analysis package (Abecasis et al, 2002) to perform an ordered subset analysis using either nonparametric linkage analysis z-scores or linear allele sharing model LOD scores.
Version
1.4
Sample session
Sample input files can be downloaded from http://www.stat.auckland.ac.nz/~browning/floss/download.htm#sample_files.% merlin -d test.dat -p test.ped -m test.map -ff --npl --grid:2 --perFamily % java -jar /usr/local/floss_1.4/floss/cov.jar -d test.dat -p test.ped -o test.cov % java -jar /usr/local/floss_1.4/floss/floss.jar -c test.cov -merlin merlin.lod \
-o floss.test --npl
Documentation
http://www.stat.auckland.ac.nz/~browning/floss/floss.htm