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Volume 2(11);  November 2006
Correspondence
Alternative Splicing at NAGNAG Acceptors: Simply Noise or Noise and More?
Michael Hiller, Karol Szafranski, Rolf Backofen, and Matthias Platzer
PLoS Genet. 2006 November; 2(11): e207. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020207.
PMCID: PMC1657060
Authors' Reply
Erik van Nimwegen and Mihaela Zavolan
PLoS Genet. 2006 November; 2(11): e208. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020208.
PMCID: PMC1657061
Review
Genomic Imprinting in Mammals: Emerging Themes and Established Theories
Andrew J Wood and Rebecca J Oakey
PLoS Genet. 2006 November; 2(11): e147. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020147.
PMCID: PMC1657038
Research Articles
Harnessing a High Cargo-Capacity Transposon for Genetic Applications in Vertebrates
Darius Balciunas, Kirk J Wangensteen, Andrew Wilber, Jason Bell, Aron Geurts, Sridhar Sivasubbu, Xin Wang, Perry B Hackett, David A Largaespada, R. Scott McIvor, and Stephen C Ekker
PLoS Genet. 2006 November; 2(11): e169. Prepublished online 2006 August 28. Published online 2006 November 10. doi: 10.1371/journal.pgen.0020169.
PMCID: PMC1635535
Expression Profiling of MAP Kinase–Mediated Meiotic Progression in Caenorhabditis elegans
Stefanie W Leacock and Valerie Reinke
PLoS Genet. 2006 November; 2(11): e174. Published online 2006 November 10. doi: 10.1371/journal.pgen.0020174.
PMCID: PMC1635537
Selection Acts on DNA Secondary Structures to Decrease Transcriptional Mutagenesis
Claire Hoede, Erick Denamur, and Olivier Tenaillon
PLoS Genet. 2006 November; 2(11): e176. Prepublished online 2006 September 1. Published online 2006 November 3. doi: 10.1371/journal.pgen.0020176.
PMCID: PMC1630709
CAF-1 Is Essential for Heterochromatin Organization in Pluripotent Embryonic Cells
Martin Houlard, Soizik Berlivet, Aline V Probst, Jean-Pierre Quivy, Patrick Héry, Geneviève Almouzni, and Matthieu Gérard
PLoS Genet. 2006 November; 2(11): e181. Prepublished online 2006 September 11. Published online 2006 November 3. doi: 10.1371/journal.pgen.0020181.
PMCID: PMC1630711
p38 MAPK Regulates Expression of Immune Response Genes and Contributes to Longevity in C. elegans
Emily R Troemel, Stephanie W Chu, Valerie Reinke, Siu Sylvia Lee, Frederick M Ausubel, and Dennis H Kim
PLoS Genet. 2006 November; 2(11): e183. Prepublished online 2006 September 11. Published online 2006 November 10. doi: 10.1371/journal.pgen.0020183.
PMCID: PMC1635533
Recombination Hotspots Flank the Cryptococcus Mating-Type Locus: Implications for the Evolution of a Fungal Sex Chromosome
Yen-Ping Hsueh, Alexander Idnurm, and Joseph Heitman
PLoS Genet. 2006 November; 2(11): e184. Published online 2006 November 3. doi: 10.1371/journal.pgen.0020184.
PMCID: PMC1630710
Selection for Unequal Densities of σ70 Promoter-Like Signals in Different Regions of Large Bacterial Genomes
Araceli M Huerta, M. Pilar Francino, Enrique Morett, and Julio Collado-Vides
PLoS Genet. 2006 November; 2(11): e185. Prepublished online 2006 September 12. Published online 2006 November 10. doi: 10.1371/journal.pgen.0020185.
PMCID: PMC1635534
Virulence Attributes and Hyphal Growth of C. neoformans Are Quantitative Traits and the MATα Allele Enhances Filamentation
Xiaorong Lin, Johnny C Huang, Thomas G Mitchell, and Joseph Heitman
PLoS Genet. 2006 November; 2(11): e187. Published online 2006 November 17. doi: 10.1371/journal.pgen.0020187.
PMCID: PMC1636697
Inference of Splicing Regulatory Activities by Sequence Neighborhood Analysis
Michael B Stadler, Noam Shomron, Gene W Yeo, Aniket Schneider, Xinshu Xiao, and Christopher B Burge
PLoS Genet. 2006 November; 2(11): e191. Prepublished online 2006 September 28. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020191.
PMCID: PMC1657047
Defining Synphenotype Groups in Xenopus tropicalis by Use of Antisense Morpholino Oligonucleotides
Amer Ahmed Rana, Clara Collart, Michael J Gilchrist, and J. C Smith
PLoS Genet. 2006 November; 2(11): e193. Prepublished online 2006 October 4. Published online 2006 November 17. doi: 10.1371/journal.pgen.0020193.
PMCID: PMC1636699
The Role of DNA Double-Strand Breaks in Spontaneous Homologous Recombination in S. cerevisiae
Gaëlle Lettier, Qi Feng, Adriana Antúnez de Mayolo, Naz Erdeniz, Robert J. D Reid, Michael Lisby, Uffe H Mortensen, and Rodney Rothstein
PLoS Genet. 2006 November; 2(11): e194. Prepublished online 2006 October 5. Published online 2006 November 10. doi: 10.1371/journal.pgen.0020194.
PMCID: PMC1635536
Four Linked Genes Participate in Controlling Sporulation Efficiency in Budding Yeast
Giora Ben-Ari, Drora Zenvirth, Amir Sherman, Lior David, Michael Klutstein, Uri Lavi, Jossi Hillel, and Giora Simchen
PLoS Genet. 2006 November; 2(11): e195. Prepublished online 2006 October 6. Published online 2006 November 17. doi: 10.1371/journal.pgen.0020195.
PMCID: PMC1636695
Functional Identification of Api5 as a Suppressor of E2F-Dependent Apoptosis In Vivo
Erick J Morris, William A Michaud, Jun-Yuan Ji, Nam-Sung Moon, James W Rocco, and Nicholas J Dyson
PLoS Genet. 2006 November; 2(11): e196. Published online 2006 November 17. doi: 10.1371/journal.pgen.0020196.
PMCID: PMC1636698
Pigment Pattern in jaguar/obelix Zebrafish Is Caused by a Kir7.1 Mutation: Implications for the Regulation of Melanosome Movement
Motoko Iwashita, Masakatsu Watanabe, Masaru Ishii, Tim Chen, Stephen L Johnson, Yoshihisa Kurachi, Norihiro Okada, and Shigeru Kondo
PLoS Genet. 2006 November; 2(11): e197. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020197.
PMCID: PMC1657052
Operon Conservation and the Evolution of trans-Splicing in the Phylum Nematoda
David B Guiliano and Mark L Blaxter
PLoS Genet. 2006 November; 2(11): e198. Prepublished online 2006 October 10. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020198.
PMCID: PMC1657053
Genomic Variation in Rice: Genesis of Highly Polymorphic Linkage Blocks during Domestication
Tian Tang, Jian Lu, Jianzi Huang, Jinghong He, Susan R McCouch, Yang Shen, Zeng Kai, Michael D Purugganan, Suhua Shi, and Chung-I Wu
PLoS Genet. 2006 November; 2(11): e199. Published online 2006 November 17. doi: 10.1371/journal.pgen.0020199.
PMCID: PMC1636696
Temporal Analysis of Meiotic DNA Double-Strand Break Formation and Repair in Drosophila Females
S Mehrotra and K. S McKim
PLoS Genet. 2006 November; 2(11): e200. Prepublished online 2006 October 10. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020200.
PMCID: PMC1657055
Opposite Root Growth Phenotypes of hy5 versus hy5 hyh Mutants Correlate with Increased Constitutive Auxin Signaling
Richard Sibout, Poornima Sukumar, Chamari Hettiarachchi, Magnus Holm, Gloria K Muday, and Christian S Hardtke
PLoS Genet. 2006 November; 2(11): e202. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020202.
PMCID: PMC1657057
Impact of Nonsense-Mediated mRNA Decay on the Global Expression Profile of Budding Yeast
Qiaoning Guan, Wei Zheng, Shijie Tang, Xiaosong Liu, Robert A Zinkel, Kam-Wah Tsui, Brian S Yandell, and Michael R Culbertson
PLoS Genet. 2006 November; 2(11): e203. Prepublished online 2006 October 18. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020203.
PMCID: PMC1657058
Genomic Selective Constraints in Murid Noncoding DNA
Daniel J Gaffney and Peter D Keightley
PLoS Genet. 2006 November; 2(11): e204. Prepublished online 2006 October 18. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020204.
PMCID: PMC1657059
Correction
Correction: Evidence for Diversity in Transcriptional Profiles of Single Hematopoietic Stem Cells
Carlos A Ramos, Teresa A Bowman, Nathan C Boles, Akil A Merchant, Yayun Zheng, Irma Parra, Suzanne A. W Fuqua, Chad A Shaw, and Margaret A Goodell
PLoS Genet. 2006 November; 2(11): e201. Published online 2006 November 24. doi: 10.1371/journal.pgen.0020201.
PMCID: PMC1657056
Corrects: Carlos A Ramos, et al. Evidence for Diversity in Transcriptional Profiles of Single Hematopoietic Stem Cells. PLoS Genet. 2006 September; 2(9): e159.
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