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Years:  2008  2007  2006  2005  2004  2003  2002  2001  2000
Year 2008Back to top
A Balanced Approach to Health Information Evaluation: A Vocabulary-based Naive Bayes Classifier and Readability Formulas
Leroy G, Miller T, Rosemblat G, Browne A
In Journal of the American Society for Information Science and Technology (JASIST), 59(9):1409-1419, 2008
(Abstract)
Accessing and Integrating Data and Knowledge for Biomedical Research
Burgun A, Bodenreider O
Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med 2008;47(Suppl 1):91-99
(Abstract) (PDF)
A Framework for Characterizing Drug Information Sources
Sharp M, Bodenreider O, Wacholder N
AMIA Annu Symp Proc 2008:662-666
(Abstract)
An Ontology-driven Semantic Mash-up of Gene and Biological pathway information: Application to the domain of nicotine dependence
Sahoo SS, Bodenreider O, Rutter JL, Skinner KJ, Sheth AP
Journal of Biomedical Informatics 2008
(Abstract)
Auditing the NCI Thesaurus with Semantic Web Technologies
Mougin F, Bodenreider O
Auditing the NCI thesaurus with Semantic Web technologies
(Abstract) (PDF)
Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System
Mougin F, Burgun A, Bodenreider O, Chabalier J, Loreal O, Le Beux P
Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008). Berlin Heidelberg New York: Springer; 2008. p. 61-76
(Abstract) (PDF)
Beyond Surface Characteristics: A New Health Text-specific Readability Measurement
Kim H, Goryachev S, Rosemblat G, Browne A, Keselman A, Zeng-Treitler Q
AMIA Annu Symp Proc. 2007 Oct 11:418-22
(Abstract)
Biomedical Ontologies in Action: Role in Knowledge Management, Data Integration and Decision Support
Bodenreider O
Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med 2008;47(Suppl 1):67-79
(Abstract)
Design and Implementation of a Personal Medication Record - MyMedicationList
Zeng K, Bodenreider O, Nelson SJ
AMIA Annu Symp Proc 2008:844-848
(Abstract) (PDF)
Identifying Risk Factors for Metabolic Syndrome in Biomedical Text
Fiszman M, Rosemblat G, AhlersCB, Rindflesch TC
AMIA Annu Symp Proc. 2007 Oct 11:249-53
(Abstract)
Leveraging Semantic Knowledge in IRB Databases to Improve Translation Science
Hurdle JF, Botkin J, Rindflesch TC
AMIA Annu Symp Proc. 2007 Oct 11:349-53
(Abstract)
Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing
Aronson AR, Mork JG, Shooshan SE, Demner-Fushman D
AMIA Annu Symp Proc. 2008 Nov 6:21-5
(Abstract)
MyMedicationList: Integrating Personal Medication Records with Resources
Nelson SJ, Zeng K, Bodenreider O
AMIA Annu Symp Proc 2008:1228
(Abstract) (PDF)
Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues
Bodenreider O
In: Bairoch A, Cohen-Boulakia S, Froidevaux C, editors. Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008); Berlin Heidelberg New York: Springer; 2008. p. 1-4
(Abstract) (PDF)
Semantic Web for Translational Biomedicine: Two Pilot Experiments
Bodenreider O
Proc. MIA Summit on Translational Bioinformatics 2008:141
(Abstract) (PDF)
SNOMED CT: Browsing the Browsers
Rogers J, Bodenreider O
Proc of the Third International Conference on Knowledge Representation in Medicine (KR-MED 2008) 2008:30-36
(Abstract)
Standards, Security and Usability: Experience with MyMedicationList
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ
Proc. AMIA Spring Congress 2008
(PDF)
The Biological Function of Some Human Transcription Factor Binding Motifs Varies with Position Relative to the Transcription Start Site
Tharakaraman K, Bodenreider O, Landsman D, Spouge JL, Marino-Ramirez
Nucleic Acids Res 2008;36(8):2777-2786
(Abstract)
Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence
Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB
J Am Med Inform Assoc. 2009 Jan-Feb;16(1):25-31. Epub 2008 Oct 24
(Abstract)
Using the Literature-based Discovery Paradigm to Investigate Drug Mechanisms
Ahlers CB, Hristovski D, Kilicoglu H, Rindflesch TC
AMIA Annu Symp Proc. 2007 Oct 11:6-10
(Abstract)
Using the RxNorm Web Services API for Quality Assurance Purposes
Peters L, Bodenreider O
AMIA Annu Symp Proc 2008:591-595
(Abstract)
 
Year 2007Back to top
Advancing Translational Research with the Semantic Web
Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, et al
BMC Bioinformatics 2007;8(Suppl 3):S2.
(Abstract) (PDF)
Aligning Anatomical Ontologies: The Role of Complex Structural Rules
Zhang S, Bodenreider O, Kantz N
IIAS-Transactions on Systems Research and Cybernetics - Proceedings of the 18th International Conference on Systems Research, Informatics and Cybernetics (InterSymp 2006) 2006;VI(2):27-32.
(Abstract) (PDF)
An Experiment in Integrationg Large Biomedical Knowledge Resources with RDF: Application to Associating Genotype and Phenotype Information
Sahoo S, Bodenreider O, Zeng K, Sheth AP
Proceedings of the workshop on Health Care and Life Sciences Data Integration for the Semantic Web at the 16th International World Wide Web Conference (WWW2007) (electronic proceedings: http://www2007.org/workshops/paper_149.pdf)
(Abstract) (PDF)
Assessing Consumer Health Vocabulary Familiarity: An Exploratory Study
Keselman A, Tse T, Crowell J et al
J Med Internet Res. 2007 Mar 14;9(1):e5
(Abstract) (PDF)
Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations
Neveol A, Mork JG, Aronson R
Proc BioNLP 2007 Workshop, 183-92.
(Abstract) (PDF)
Clinical Ontologies for Discovery Applications
Lussier YA, Bodenreider O
In: Baker CJO, Cheung K-H, editors. Semantic Web: Revolutionizing knowledge discovery in the life sciences. New York: Springer; 2007. p. 101-119.
(Abstract) (PDF)
Co-evolutionary Rates of Functionally Related Yeast Genes
Marino-Ramirez L, Bodenreider O, Kantz N, Jordan IK
Evolutionary Bioinformatics Online 2006;2:295-300.
(Abstract) (PDF)
Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS
Fung KW, Bodenreider O, Aronson AR, Hole WT, Srinivasan S
Medinfo 2007:605-609.
(Abstract) (PDF)
Comparing Two Approaches for Aligning Representations of Anatomy
Zheng S, Mork P, Bodenreider O, Bernstein PA
Artificial Intelligence in Medicine 2007;39(3):227-236.
(Abstract) (PDF)
Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics
Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC
Pacific Symposium on Biocomputing 2007 12:209-220
(Abstract) (PDF)
From 'Glycosyltransferase' to 'Congenital Muscular Dystrophy': Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology
Sahoo SS, Zeng K, Bodenreider O, Sheth A
MEDINFO 2007:1260-1264
(Abstract) (PDF)
Hybrid Alignment Strategy for Anatomical Ontologies Results of the 2007 Ontology Alignment Contest
Zhang S, Bodenreider O
Proc. OAEI 2007:139-149.
(Abstract) (PDF)
Identifying Mismatches in Alignments of Large Anatomical Ontologies
Zhang S, Bodenreider O
Proc AMIA Annu Symp; 2007:851-855
(Abstract) (PDF)
Integrating the UMLS into an RDF-Based Biomedical Knowledge Repository
Zeng K, Bodenreider O
Proc AMIA Annu Symp; 2007:1170
(Abstract) (PDF)
Interpreting Comparative Constructons in Biomedical Text
Fiszman M, Demner-Fushman D, Lang FM, Goetz P, Rindflesch TC
Proc. 2007 Workshop on Biomedical Natural Language Processing (BioNL'07), June 2007, pp. 137-144, Prague, Czech Republic.
(Abstract) (PDF)
Investigating Subsumption in SNOMED CT: An Exploration into Large Description Logic-based Biomedical Terminologies
Bodenreider O, Smith B, Kumar A, Burgun A
Artificial Intelligence in Medicine 2007;39(3):183-195.
(Abstract) (PDF)
Issues in Integrating Epidemiology and Research Information in Oncology: Experience with ICD-O3 and the NCI Thesaurus
Burgun A, Bodenreider O
Proc AMIA Annu Symp; 2007:pp 85-89.
(Abstract) (PDF)
Knowledge-Based Methods to Help Clinicians Find Answers in MEDLINE
Sneiderman CA, Demner-Fushman D, Fiszman M, Ide NC, Rindflesch TC
2007 Nov-Dec;14(6):772-80. Epub 2007 Aug 21
(Abstract) (PDF)
Lessons Learned from Cross-Validating Alignments Between Large Anatomical Ontologies
Zhang S, Bodenreider O
MEDINFO 2007:822-826.
(Abstract) (PDF)
Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature
Neveol A, Shooshan SE, Humphrey SM, Rindflesch TC, Aronson AR
Pacific Symposium on Biocomputing 2007 12:293-303
(Abstract) (PDF)
Oncologic Pathology in Biomedical Terminologies: Challenges for Data Integration
Bodenreider O, Burgun A
Proc. of the APIII conference on "Anatomic Pathology Informatics and Imaging Support for Translational Medicine", Pittsburgh, Pennsylvania, September 9-12, 2007 2007:Abstract 342.
(Abstract) (PDF)
RxNav: An Integrated View on Drug Information
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ
Proc AMIA Annu Symp; 2007:1202
(Abstract) (PDF)
RxNav: Towards an Integrated View on Drug Information
Zeng K, Bodenreider O, Kilbourne J, Nelson S
MEDINFO 2007:386.
(Abstract) (PDF)
The Consumers' Perspective: Text Features and Readability of Consumer Health Text
Rosemblat G, Logan R
Mednet 2007: Germany. 12 Oct 2007.
(Abstract)
Using Discourse Analysis to Improve Text Categorization in MEDLINE
Ruch P, Geissbuhler A, Gobeill J, Lisacek F, Tbahriti I, Veuthey A, Aronson AR
Medinfo 2007:710-715.
(Abstract) (PDF)
 
Year 2006Back to top
Argumentative Feedback: A Linguistically-motivated Term Expansion for Information Retrieval
Ruch P, Tbahriti I, Bobeill J, Aronson AR
Proc. COLING/ACL 2006, 675-82
(Abstract) (PDF)
Argument-predicate Distance as a Filter for Enhancing Precision in Extracting Predications on the Genetic Etiology of Disease
Masseroli M, Kilicoglu H, Lang F-M, Loane RF, Rindflesch TC
BMC Bioinformatics 2006; 7:291
(Abstract) (PDF)
Besides Precision and Recall: Exploring Alternative Approaches to Evaluating an Automatic Indexing Tool for MEDLINE
Neveol A, Zeng K, Bodenreider O
Proc AMIA Symp 2006:589-593
(Abstract) (PDF)
Bio-ontologies: Current Trends and Future Directions
Bodenreider O, Stevens R
Briefings in Bioinformatics 2006;7(3):256-274
(Abstract) (PDF)
Comparing the Representation of Anatomy in the FMA and SNOMED CT
Bodenreider O, Zhang S
Proc AMIA Symp 2006:46-50
(Abstract) (PDF)
Comparing Two Approaches to Eliminating Cycles in Terminological Systems
Mougin F, Bodenreider O
Proceedings of the 15th conference on Pattern Recognition and Artificial Intelligence (RFIA 2006)(electronic proceedings)
(Abstract) (PDF)
Cross-Language Search in a Monolingual Health Information System: Flexible Designs and Lexical Processes
Rosemblat G, Graham L
In Proceedings of the 9th ISKO Conference, pages 173-182, Vienna, Austria, July 2006.
(Abstract) (PDF)
dTagger: A POS Tagger
Divita G, Browne AC, Loanne R
AMIA 2006 Symposium Proceedings pp 201-203
(Abstract) (PDF)
Enhancing Biomedical Ontologies through Alignment of Semantic Relationships: Exploratory Approaches
Bodenreider O, Peters L, McCray A
Proc AMIA Symp 2006:804-808
(Abstract) (PDF)
Exploiting Semantic Relations for Literature-Based Discovery
Hristovski D, Friedman C, Rindflesch TC
AMIA Annu Symp Proc. 2006; 349-53
(Abstract) (PDF)
Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort
Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ, Aronson AR
Proc TREC 2006, 569-76
(Abstract) (PDF)
Global Similarity and Local Divergence in Human and Mouse Gene Co-expression Networks
Tsaparas P, Marino-Ramirez L, Bodenreider O
BMC Evol Biol 2006;6(1):70
(Abstract) (PDF)
Lexical, Terminological and Ontological Resources for Biological Text Mining
Bodenreider O
Ananiadou S, McNaught J, editors. Text mining for biology and biomedicine: Artech House; 2006. p. 43-66.
(Abstract) (PDF)
Mapping Data Elements to Terminological Resources for Integrating Biomedical Data Sourcse
Mougin F, Burgun A, Bodenreider O
BMC Bioinformatics 2006;7(Suppl 3):S6
(Abstract) (PDF)
NLM Anatomical Ontology Alignment system: Results of the 2006 ontology alignment contest
Zhang S, Bodenreider O
Proceedings of the Ontology Alignment Evaluation Initiative 2006 Campaign (OAEI 2006) 2006:145-156
(Abstract) (PDF)
Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions
Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau A
In: Proceedings of IEEE International Conference on Data Mining (ICDM) 2006, Workshop on Data Mining in Bioinformatics: IEEE Computer Society Press; 2006. p. 114 - 119
(Abstract) (PDF)
RxNav: A Web Service for Standard Drug Information
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ
Proc AMIA Symp 2006:1198
(Abstract) (PDF)
Semantic Representation of Consumer Questions and Physician Answers
Slaughter LA, Soergel D, Rindflesch TC
Int J Med Inform. 2006;75(7):513-29
(Abstract) (PDF)
Summarizing Drug Information in Medline Citations
Fiszman M, Rindflesch TC, Kilicoglu H
AMIA Annu Symp Proc. 2006; 254-8
(Abstract) (PDF)
Text Features and Readability: Expert Evaluation of Consumer Health Text
Rosemblat G, Logan R, Tse T, Graham L
Mednet 2006: 11th World Congress on Internet in Medicine the Society for Internet in Medicine. October 14-16, 2006. Toronto, Canada.
(Abstract) (PDF)
User Study of a Spanish-language ClinicalTrials.gov Prototype System
Rosemblat G, Tse T
To appear in Proceedings of the American Medical Informatics Association Annual Conference (AMIA 2006), Washington, DC, November 2006 pp 659-664.
(Abstract) (PDF)
Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration
Mougin F, Burgun A, Bodenreider O
Proc AMIA Symp 2006:574-578.
(Abstract) (PDF)
Word Sense Disambiguation by Selecting the Best Semantic Type Based on Journal Descriptor Indexing: Preliminary Experiment
Humphrey SM, Rogers WJ, Kilicoglu H, Demner-Fushman D, Rindflesch TC
Journal of the American Society for Information Science and Technology. 2006 Jan 1;57(1):96-113.
(Abstract) (PDF)
 
Year 2005Back to top
Determining Prominent Subdomains in Medicine
Bernhardt PJ, Humphrey SM, Rindflesch TC
Proceedings of the AMIA Annual Symposium. 2005;:46-50.
(Abstract) (PDF)
Effects of Information and Machine Learning Algorithms on Word Sense Disambiguation with Small Datasets
Leroy G, Rindflesch TC
International Journal of Medical Informatics. 2005 Aug;74(7-8):573-85.
(Abstract) (PDF)
Evaluation of French and English MeSH Indexing Systems with a Parallel Corpus
Neveol A, Mork JG, Aronson AR, Darmoni SJ
AMIA Annu Symp Proc. 2005;:565-9
(Abstract) (PDF)
Fusion of Knowledge-intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents
Aronson AR, Demner-Fushman D, Humphrey SM, Lin J, Liu H, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ
Proc TREC 2005, 36-45
(Abstract) (PDF)
Medical Facts to Support Inferencing in Natural Language Processing
Rindflesch TC, Pakhomov SV, Fiszman M, Kilicoglu H, Sanchex VR
Proceedings of the AMIA Annual Symposium. 2005;:634-38.
(Abstract) (PDF)
MedPost: A Part of Speech Tagger for BioMedical Text
Smith L, Rindflesch TC, Wilbure WJ
Bioinformatics. 2004 Sep 22;20(14):2320-1.
(Abstract) (PDF)
MedTag: A Collection of Biomedical Annotations
Smith L, Rindflesch TC, Wilbure WJ
Bioinformatics. 2004 Sep 22;20(14):2320-1.
(Abstract) (PDF)
Semantic Interpretation for the Biomedical Research Literature
Rindflesch TC, Fiszman M, Bisharah L
In Hsinchun C, Fuller S, Friedman C, Hersh w (eds.) Medical Informatics: Knowledge Management and Data Mining in Biomedicine. Springer: New York, pp. 399-422, 2005.
(Abstract) (PDF)
Semantic Representation of Consumer Questions and Physician Answers
Slaughter LA, Soergel D, Rindflesch TC
International Journal of Medical Informatics. August 23, 2005.
(Abstract) (PDF)
Semi-Automatic Indexing of Full Text Biomedical Articles
Gay CW, Kayaalp M, Aronson AR
AMIA Annu Symp Proc. 2005;:271-5
(Abstract) (PDF)
The Importance of the Lexicon in Tagging Biological Text
Smith LH, Rindflesch TC, Wilbur WJ
Natural Language Engineering 2005.
(Abstract) (PDF)
Why Do We Need Probabilistic Approaches to Ontologies and the Associated Data?
Kayaalp M
Proc AMIA Symposium 2005
(Abstract) (PDF)
 
Year 2004Back to top
Abstraction Summarization for Managing the Biomedical Research Literature
Fiszman M, Rindflesch TC, Kilicoglu H
Proceedings of the HLT-NAACL Workshop on Computational Lexical Semantics. 2004;:76-83.
(Abstract) (PDF)
Application of a Medical Text Indexer to an Online Dermatology Atlas
Kim GR , Aronson AR, Mork JG, Cohen BA, Lehmann CU
MedInfo. 2004 Sept.;2004:.
(Abstract) (PDF)
Development of a Test Collection of Manually Extracted Semantic Relationships in Health Consumer Texts
Slaughter LA, Rindflesch TC
MedInfo. 2004 Sept.;2004: 1865.
(Abstract) (PDF)
Gene Terms and English Words: An Ambiguous Mix
Sehgal AK, Srinivasan P, Bodenreider O
Proceedings of the SIGIR 2004 Workshop on Search and Discovery in Bioinformatics 2004.
(Abstract) (PDF)
Identifying Anatomical Concepts in Biomedical Text for Automatic Selection of Images
Bernhardt PJ, Rindflesch TC, Kilicoglu H, Tringali M
Medinfo. 2004 Sept.;2004: 1521.
(Abstract) (PDF)
Identifying Respiratory Findings in Emergency Department Reports for Biosurveillance using MetaMap
Chapman WW, Fiszman M, Dowling JN, Chapman BE, Rindflesch TC
Medinfo. 2004 Sept.;2004: 487-491.
(Abstract) (PDF)
Knowledge-intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations
Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loanne RR, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N
Proc TREC 2004, 503-11
(Abstract) (PDF)
Lessons Learned from Aligning two Representations of Anatomy
Zhang S, Mork P, Bodenreider O
In: Hahn U, Schulz S, Cornet R, editors. Proceedings of the First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004); 2004. p. 102-108.
(Abstract) (PDF)
Methods for Diagnosing Physiological Conditions of Human Subjects from Multivariate Time Series Biosensor Data
Kayaalp M
Physiological Data Modeling Contest, the Twenty-First International Conference on Machine Learning (ICML), 2004 July.
(Abstract) (PDF)
Strategies for Mapping Concepts in Gastrointestinal Endoscopy Reports to the UMLS Metathesaurus
Tringali M, Rindflesch TC, Kilicoglu H, Fiszman M, Bodenreider O
Medinfo. 2004 Sept.;2004: 1885.
(Abstract) (PDF)
Summarization of an Online Medical Encyclopedia
Fiszman M, Rindflesch TC, Kilicoglu H
MedInfo. 2004 Sept.;2004: 506-510.
(Abstract) (PDF)
The NLM Indexing Initiative's Medical Text Indexer
Aronson AR, Mork JG, Gay CW, Humphrey SM, Rogers WJ
Medinfo. 2004 Sept.;2004: 268-272.
(Abstract) (PDF)
Using Natural Languge Processing, Locus Link, and the Gene Ontology to Compare OMIM to MEDLINE
Libbus B, Kilicoglu H, Rindflesch TC, Mork JG, Aronson AR
Proceedings of the HLT-NAACL Workshop on Linking the Biological Literature, Ontologies and Databases: Tools for Users. 2004;:69-76.
(Abstract) (PDF)
Using Symbolic Knowledge in the UMLS to Disambiguate Words in Small Datasets with a Naive Bayes Classifier
Leroy G, Rindflesch TC
Medinfo. 2004 Sept.;2004: 381-385.
(Abstract) (PDF)
 
Year 2003Back to top
Gene Indexing: Characterization and Analysis of NLM's GeneRIFs
Mitchell JA , Aronson AR , Mork JG , Folk LC , Humphrey SM , Ward JM
Proc. AMIA Symposium. 2003 Nov;:460-464.
(Abstract) (PDF)
Generating Hypotheses by Discovering Implicit Associations in the Literature: A Case Report of a Search for New Potential Therapeutic Uses for Thalidomide
Weeber M, Vos R, Klein H, De Jong-Van Den Berg LT, Aronson AR, Molema G
J Am Med Inform Assoc. ;10(3):252-9.
(Abstract) (PDF)
Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts
Fiszman M, Rindflesch TC, Kilicoglu H
Proc. AMIA Symposium. 2003 Nov;:239-243.
(Abstract) (PDF)
Interpreting Hypernymic Propositions in an Online Medical Encyclopedia
Fiszman M, Rindflesch TC, Kilicoglu H
Proc. AMIA Symposium. 2003 Nov;:840.
(Abstract) (PDF)
Language and Vocabulary Tools
Brown AC , Divita Guy , Aronson AR , McCray AT
Proc. AMIA Symposium. 2003 Nov;:.
(Abstract) (PDF)
Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics
Kayaalp, Mehmet , Aronson, Alan R , Humphrey, Susanne M, Ide, Nicholas C, Tanabe, Lorraine K
Proceedings of the Text Retrieval Conference (TREC-2003). 2003;: 175-84.
(Abstract) (PDF)
Semantic Relations Asserting the Etiology of Genetic Diseases
Rindflesch TC , Libbus B , Hristovski D , Aronson AR , Kilicoglu H
Proc. AMIA Symposium. 2003 Nov;:554-558.
(Abstract) (PDF)
The Interaction of Domain Knowledge and Linguistic Structure in Natural Language Processing: Interpreting Hypernymic Propositions in Biomedical Text
Rindflesch TC , Fiszman M
Journal of Biomedical Informatics. 2003;36(6):462-77.
(Abstract) (PDF)
The UMLS Semantic Network and the Semantic Web
Kashyap V
Proc. AMIA Symposium. 2003 Nov;:351-355.
(Abstract) (PDF)
Towards Linking Patients and Clinical Information: Detecting UMLS Concepts in E-mail
Brennan PF, Rindflesch TC
J Biomed Inform. 2003 Aug-Oct;36(4-5):334-41
(Abstract) (PDF)
Towards Semi-Automatic Generation of Biomedical Ontologies
Kashyap V , Ramakrishan C , Rindflesch TC
Proc. AMIA Symposium. 2003 Nov;:886.
(Abstract) (PDF)
 
Year 2002Back to top
A Study of Abbreviations in MEDLINE Abstracts
Liu H, Aronson AR, Friedman C
Proc AMIA Symp. 2002 ;():464-8.
(Abstract) (PDF)
Discovering Protein Similarity Using Natural Language Processing
Sarkar IN, Rindflesch TC
Proc AMIA Symp. 2002 ;():677-81.
(Abstract) (PDF)
Exploring Text Mining from MEDLINE
Srinivasan P, Rindflesch T
Proc AMIA Symp. 2002 ;():722-6.
(Abstract) (PDF)
Finding UMLS Metathesaurus Concepts in MEDLINE
Srinivasan S, Rindflesch TC, Hole WT, Aronson AR, Mork JG
Proc AMIA Symp. 2002 ;():727-31.
(Abstract) (PDF)
NLP-Based Information Extraction for Managing the Molecular Biology Literature
Libbus B, Rindflesch TC
Proc AMIA Symp. 2002 ;():445-9.
(Abstract) (PDF)
Semantic Processing for Enhanced Access to Biomedical Knowledge
Rindflesch TC, Aronson AR
Real World Semantic Web Applications, IOS Press. 2002;:157-72.
(Abstract) (PDF)
The Lexical Properties of the Gene Ontology (GO)
McCray AT, Browne AC, Bodenreider O
Proc. of AMIA Annual Symposium. 2002;:504-508.
(Abstract) (PDF)
Web Crawling Agents for Retrieving Biomedical Information
Srinivasan P, Mitchell JA, Bodenreider O, Pant G, Menczer F
Proc. of the International Workshop on Bioinformatics and Multi-Agent Systems (BIXMAS). 2002 Jul.
(Abstract) (PDF)
 
Year 2001Back to top
Automatic Indexing by Discipline and High-Level Categories: Methodology and Potential Applications
Humphrey SM, Rindflesch TC, Aronson AR
Advances in classification research. Proc. of the 11th ASIST SIG/CR Classification Research Workshop. 2001.
(Abstract) (PDF)
Automatic MeSH Term Assignment and Quality Assessment
Kim W, Aronson AR, Wilbur WJ
Proc AMIA Symp. 2001 ;():319-23.
(Abstract) (PDF)
Effective Mapping of Biomedical Text to the UMLS Metathesaurus: The MetaMap Program
Aronson AR
Proc AMIA Symp. 2001 ;():17-21.
(Abstract) (PDF)
Evaluating UMLS Strings for Natural Language Processing
McCray AT, Bodenreider O, Malley JD, Browne AC
Proc AMIA Symp. 2001 ;():448-52.
(Abstract) (PDF)
 
Year 2000Back to top
Argument Identification for Arterial Branching Predications Asserted in Cardiac Catheterization Reports
Rindflesch TC, Bean CA, Sneiderman CA
Proc AMIA Symp. 2000 ;():704-8.
(Abstract) (PDF)
Automatic Indexing by Discipline and High-Level Category: Methodology and Potential Applications
Humphrey S, Rindflesch TC, Aronson AR
Proc. of the 11th SIG/CR Classification Research Workshop. 2000;:103-16.
(Abstract) (PDF)
EDGAR: Extraction of Drugs, Genese, and Relations from the Biomedical Literature
Rindflesch TC, Tanabe L, Weinstein JN, Hunter L
Pac Symp Biocomput. 2000 ;():517-28.
(Abstract) (PDF)
Extracting Molecular Binding Relationships from Biomedical Text
Rindflesch TC, Rajan J, Hunter L
Proc. of the 6th Applied Natural Language Processing Conference. 2000;: 188-95.
(Abstract) (PDF)
System Expansion and Integration with Agents in HSTAT
Xiaocheng L, Prettyman M, Antonucci R
Proc. of the World Multiconference on Systemics, Cybernetics, and Informatics. 2000 Jul.;: 2000.
Text-Based Discovery in Biomedicine: The Architecture of the DAD-System
Weeber M, Klein H, Aronson AR, Mork JG, de Jong-van den Berg LT, Vos R
Proc AMIA Symp. 2000 ;():903-7.
(Abstract) (PDF)
The NLM Indexing Initiative
Aronson AR, Bodenreider O, Chang HF, Humphrey SM, Mork JG, Nelson SJ, Rindflesch TC, Wilbur WJ
Proc AMIA Symp. 2000 ;():17-21.
(Abstract) (PDF)