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Year 2008 | Back to top |
Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies |
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Proc. KR-MED 2008 |
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Issues in Mapping LOINC Laboratory Tests to SNOMED CT |
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AMIA Annu Symp Proc 2008:51-55 |
(Abstract) |
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Year 2007 | Back to top |
Combining Resources to Find Answers to Biomedical Questions |
Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, et al
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Proc TREC 2007, 205-14 |
(Abstract) (PDF)
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Experience in Integrating Large RDF-based Biomedical Knowledge Resources with Oracle |
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Proceedings of the 8th International Oracle Life Sciences User Group Meeting 2007:(electronic proceedings: http://www.olsug.org/wiki/images/d/d1/Kelly_Zheng.pdf) |
(Abstract) (PDF)
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Fine-Grained Indexing of the Biomedical Literature: MeSH Subheading Attachment for a MEDLINE Indexing Tool |
Neveol A, Shooshan SE, Mork JG, Aronson AR
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AMIA Annu Symp Proc. 2007;:553-7 |
(Abstract) (PDF)
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Year 2006 | Back to top |
Data Integration Through Data Elements: Mapping Data Elements to Terminological Resources |
Mougin F, Burgun A, Bodenreider O
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Proceedings of the Second Interntional Symposium on Semantic Mining in Biomedicine (SMBM-2006) 2006:52-59 |
(Abstract) (PDF)
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Experience in Reasoning with the Foundational Model of Anatomy in OWL DL |
Zhang S, Bodenreider O, Golbreich C
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In: Altman RB, Dunker AK, Hunter L, Murray TA, Klein TE, editors. Pacific Symposium on Biocomputing 2006: World Scientific; 2006. p. 200-211. |
(Abstract) (PDF)
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Interpretation of Data and Identification of Information are Sine Qua Non for Modern Digital Information Services |
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Proceedings of AMIA Symposium, 2006 |
(Abstract) (PDF)
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The Foundational Model of Anatomy in OWL: Experience and Perspectives |
Golbreich C, Zhang S, Bodenreider O
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Journal of Web Semantics: Science, Services and Agents on the World Wide Web 2006;4(3):181-195. |
(Abstract) (PDF)
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Using Dependence Relations in MeSH as a Framework for the Analysis of Disease Information in Medline |
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Proceddings of the Second International Symposium on Semantic Mining in Biomedicine (SMBM-2006) 2006:76-83 |
(Abstract) (PDF)
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Year 2005 | Back to top |
Alignment of Multiple Ontologies of Anatomy: Deriving Indirect Mappings from Direct Mappings to a Reference |
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Proceedings of AMIA Annual Symposium 2005:864-868. |
(Abstract) (PDF)
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An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis |
Wang H, Azuaje F, Bodenreider O
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Proceedings of the 18th IEEE International Symposium on Computer-Based Medical Systems 2005:389-394. |
(Abstract) (PDF)
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An ontology of chemical entities helps identify dependence relations among Gene Ontology terms |
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Proceedings of the First International Symposium on Semantic Mining in Biomedicine (SMBM-2005) 2005. |
(Abstract) (PDF)
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Approaches to Eliminating Cycles in the UMLS Metathesaurus: Naive vs. Formal |
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Proceedings of AMIA Annual Symposium 2005:550-554. |
(Abstract) (PDF)
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Biomedical Ontologies |
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In: Chen H, Fuller S, Jersh WR, Friedman C, editors. Medical Informatics: Advances in Knowledge Management and Data Mining in Biomedicine: Springer-Verlag; 2005. p. 211-236. |
(Abstract) (PDF)
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Classifying diseases with respect to anatomy: a study in SNOMED CT |
Bergun A, Bodenreider O, Mougin F
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Proceedings of AMIA Annual Symposium 2005:91-95. |
(Abstract) (PDF)
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GenesTrace: Phenomic Knowledge Discovery Via Structured Terminologies |
Cantor MN, Sarkar INK, Bodenreider O, Lussier YA
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Pacific Symposium on Biocomputing 2005: World Scientific. 2005;:103-114. |
(Abstract) (PDF)
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Implementing RxNav, a RxNorm Browser |
Zeng K, Bodenreider O, Nelson SJ
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Proceedings of Medical Informatics Europe 2005 (CD-ROM) 2005:1268. |
(Abstract) (PDF)
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Issues in the Classification of Disease Instances with Ontologies |
Bergun A, Bodenreider O, Jacquelinet C
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Stud Health Technol Inform 2005;116:695-700. |
(Abstract) (PDF)
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Knowledge Integration for Bio-Threat Response |
Backer A, Bodenreider O, Karp P, Kelly H, Loranger S, Musen M, Sriram R, Wroe C
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Los Alamos White Paper |
(Abstract) (PDF)
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Linking the Gene Ontology to other biological ontologies |
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Proceedings of the ISMB'2005 SIG meeting on Bio-ontologies 2005:17-18. |
(Abstract) (PDF)
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Migrating the FMA from Protege to OWL |
Golbreich C, Zhang S, Bodenreider O
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Proceedings of the Eighth International Protege Conference 2005:108-111. |
(Abstract) (PDF)
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Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology |
Bodenreider O, Aubry M, Burgun A
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Pacific Symposium on Biocomputing 2005: World Scientific. 2005;:91-102. |
(Abstract) (PDF)
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Of Mice and Men: Aligning Mouse and Human Anatomies |
Bodenreider O, Hayamizu TF, Ringwald M, De Coronado S, Zhang S
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Proceedings of AMIA Annual Symposium 2005:61-65. |
(Abstract) (PDF)
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Ontology-driven Similarity Approaches to Supporting Gene Functional Assessment |
Azuaje F, Wang H, Bodenreider O
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Proceedings of the ISMB'2005 SIG meeting on Bio-ontologies 2005:9-10. |
(Abstract) (PDF)
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RxNav: A Progress Report |
Zeng K, Bodenreider O, Nelson SJ
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Proceedings of AMIA Annual Symposium 2005:1168. |
(Abstract) (PDF)
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The Foundational Model of Anatomy in OWL: experience and perspectives |
Golbreich C, Zhang S, Bodenreider O
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Proceedings of the Workshop on OWL: Experiences and Directions 2005. |
(Abstract) (PDF)
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Utilizing the UMLS for Semantic Mapping between Terminologies |
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Proceedings of AMIA Annual Symposium 2005:266-270. |
(Abstract) (PDF)
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Year 2004 | Back to top |
Aligning Knowledge Sources in the UMLS: Methods, Quantitative Results, and Applications |
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Medinfo. 2004 Sept.;2004:327-331. |
(Abstract) (PDF)
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Comparing Associative Relationships Among Equivalent Concepts Across Ontologies |
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MedInfo. 2004 Sept.;2004: 459-463. |
(Abstract) (PDF)
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From Functional Similarity Among Gene Products to Dependence Relations Among Gene Ontology Terms (Abstract) |
Bodenreider O, Aubry M, Burgun A
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Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:53. |
(Abstract) (PDF)
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Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships |
Wang H, Azuaje F, Bodenreider O, Dopazo J
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Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB'2004) 2004:25-31. |
(Abstract) (PDF)
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Gene Ontology-Driven Similarity for Gene Expression Correlation Analysis |
Azuaje FJ, Bodenreider O, Wang H, Dopazo J
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Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:47. |
(Abstract) |
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GenesTraceTM: Biological Knowledge Discovery via Structured Terminology |
Sarkar IN, Cantor MN, Bodenreider O, Lussier YA
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MedInfo. |
(Abstract) (PDF)
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Incorporating Ontology-Driven Similarity Knowledge Into Functional Genomics: An Exploratory Study |
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Proceedings of the 2004 IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE-2004) 2004:317-324. |
(Abstract) (PDF)
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Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain |
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Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE, editors. Pacific Symposium on Biocomputing 2004: World Scientific. 2004;: 250-261. |
(Abstract) (PDF)
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Mapping the Gene Ontology Into the Unified Medical Language System |
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Comparative and Functional Genomics |
(Abstract) (PDF)
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RxNav: A Semantic Navigation Tool for Clinical Drugs |
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Medinfo. 2004 Sept.;2004: 1530. |
(Abstract) (PDF)
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The Ontology-Epistemology Divide: A Case Study in Medical Terminology |
Bodenreider O, Smith B, Burugn A
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Proceedings of the Third International Conference on Formal Ontology in Information Systems (FOIS2004): IOS Press; 2004. p. 185-195. |
(Abstract) (PDF)
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The Unified Medical Language System (UMLS): Integrating Biomedical Terminology |
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Nucleic Acids Res; Database Issue. 2004;32: 267-70. |
(Abstract) (PDF)
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Year 2003 | Back to top |
Aligning Representations of Anatomy Using Lexical and Structural Methods |
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Proc. AMIA Symposium. 2003 Nov;:753-757. |
(Abstract) (PDF)
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An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS |
Cantor MN, SI N, Hartel F, Bodenreider O, Lussier YA
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Stud Health Technol Inform. 2003;:62-67. |
(Abstract) (PDF)
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An Upper Level Ontology for the Biomedical Domain |
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Comp Funct Genom. 2003;4:80-4. |
(Abstract) (PDF)
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Biomedical Ontologies |
Bodenreider O, Mitchell JA, McCray AT
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Pacific Symposium on Biocomputing: World Scientific. 2003;:562-564. |
(Abstract) (PDF)
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Evaluation of WordNet as a Source of Lay Knowledge for Molecular Biology and Genetic Diseases: A Feasibility Study |
Bodenreider O, Burgun A, Mitchell JA
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Stud Health Technol Inform. 2003;95:379-384. |
(Abstract) (PDF)
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Exploring Adjectival Modification in Biomedical Discourse Across Two Genres |
Bodenreider O, Pakhomov S
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Proc. of the ACL, 2003 Workshop, Natural Language Processing in Biomedicine. 2003;:105-112. |
(Abstract) (PDF)
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Exploring Semantic Groups Through Visual Approaches |
Bodenreider O , McCray AT
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Journal of Biomedical Informatics. 2003;36(6):414-432 |
(Abstract) (PDF)
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From Phenotype to Genotype: Issues in Navigating the Available Information Resources |
Mitchell JA , McCray AT , Bodenreider O
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Methods of Information in Medicine. 2003;42(5):557-563. |
(Abstract) (PDF)
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Graphical Visualization and Navigation of Genetic Disease Information |
Bodenreider O , Mitchell JA
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Proc. AMIA Symposium. 2003 Nov;:792. |
(Abstract) (PDF)
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Knowledge Augmentation for Aligning Ontologies: An Evaluation in the Biomedical Domain |
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Proceedings of the Semantic Integration Workshop at the Second International Semantic Web Conference. 2003: 109-114. |
(Abstract) (PDF)
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Semantic Integration in Biomedicine |
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Proceedings of the Semantic Integration Workshop at the Second International Semantic Web Conference. 2003;: 156-157. |
(Abstract) (PDF)
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Strength in Numbers: Exploring Redundancy in Hierarchical Relations Across Biomedical Terminologies |
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Proc. AMIA Symposium. 2003 Nov;101-105:. |
(Abstract) (PDF)
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The UMLS Knowledge Source Server: An Object Model For Delivering UMLS Data |
Bangalore A , Thorn KE , Tilley C , Peters L
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Proc. AMIA Symposium. 2003 Nov;:51-55. |
(Abstract) (PDF)
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Year 2002 | Back to top |
A Conceptual Framework for the Biomedical Domain |
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The Semantics of Relationships: An Interdisciplinary Perspective. Boston: Kluwer Academic Publishers. 2002;:181-198. |
(Abstract) (PDF)
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Assessing the Consistency of a Biomedical Terminology Through Lexical Knowledge |
Bodenreider O, Burgun A, Rindflesch TC
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Int J Med Inf. 2002 Dec 4;67(1-3):85-95. |
(Abstract) (PDF)
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Assessing the Consistency of a Biomedical Terminology Through Lexical Knowledge |
Bodenreider O, Burgun A, Rindflesch TC
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Proc. of the Workshop on Natural Language Processing in Biomedical Applications. 2002;:77-83. |
(Abstract) (PDF)
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Characterizing the Definitions of Anatomical Concepts in WordNet and Specialized Sources |
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Proc. of the First Global WordNet Conference. 2002;:223-230. |
(Abstract) (PDF)
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Evaluation of the UMLS as a Terminology and Knowledge Resource for Biomedical Informatics |
Bodenreider O, Mitchell JA, McCray AT
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Proc. of AMIA Annual Symposium. 2002;:61-65. |
(Abstract) (PDF)
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Experiences in Visualizing and Navigating Biomedical Ontologies and Knowledge Bases |
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Proc. of the ISMB'SIG meeting; Bio-ontologies. 2002;:29-32. |
(Abstract) (PDF)
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From Phenotype to Genotype: Navigating the Available Information Resources |
Mitchell JA, McCray AT, Bodenreider O
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Proc. of AMIA Annual Symposium. 2002;:1109. |
(Abstract) (PDF)
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Representation of Roles in Biomedical Ontologies: A Case Study in Functional Genomics |
Burgun A, Bodenreider O, Le Duff F, Moussouni F, Loreal O
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Proc AMIA Symp. 2002 ;():86-90. |
(Abstract) (PDF)
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Unsupervised, Corpus-Based Method for Extending a Biomedical Terminology |
Bodenreider O, Rindflesch TC, Burgun A
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Proc. of the ACL Workshop; Natural Language Processing in the Biomedical Domain. 2002;:53-60. |
(Abstract) (PDF)
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Year 2001 | Back to top |
'Ome Sweet 'Omics - A Genealogical Treasury of Words |
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Genealogical Treasury of Words. Scientist. 2001;15(7):8. |
(Abstract) (PDF)
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Aggregating UMLS Semantic Types for Reducing Conceptual Complexity |
McCray AT, Burgun A, Bodenreider O
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Medinfo. 2001 ;10(Pt 1):216-20. |
(Abstract) (PDF)
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An Object-Oriented Model for Representing Semantic Locality in the UMLS |
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Medinfo. 2001 ;10(Pt 1):161-5. |
(Abstract) (PDF)
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Aspects of the Taxonomic Relation in the Biomedical Domain |
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FOIS. 2001;: 222-233 |
(Abstract) (PDF)
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Circular Hierarchical Relationships in the UMLS: Etiology, Diagnosis, Treatment, Complications, and Prevention |
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Proc AMIA Symp. 2001 ;():57-61. |
(Abstract) (PDF)
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Comparing Terms, Concepts and Semantic Classes in WordNet and the Unified Medical Language System |
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Proc. of the NAACL'2001 Workshop; WordNet and Other Lexical Resources: Applications, Extensions and Customizations. 2001;:77-82. |
(Abstract) (PDF)
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Lexically-Suggested Hyponymic Relations Among Medical Terms and Their Representation in the UMLS |
Bodenreider O, Burgun A, Rindflesch TC
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Proc. of TIA'2001; Terminology and Artificial Intelligence. 2001;:11-21. |
(Abstract) (PDF)
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Mapping the UMLS Semantic Network into General Ontologies |
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Proc AMIA Symp. 2001 ;():81-5. |
(Abstract) (PDF)
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Methods for Exploring the Semantics of the Relationships Between Co-Occurring UMLS Concepts |
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Medinfo. 2001 ;10(Pt 1):171-5. |
(Abstract) (PDF)
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Relationships Among Knowledge Structures: Vocabulary Integration Within a Subject Domain |
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Relationships in the organization of knowledge: Kluwer. 2001;:81-98. |
(Abstract) (PDF)
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Year 2000 | Back to top |
A Semantic Navigation Tool for the UMLS |
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Proc. of AMIA Annual Symposium. 2000;: 971. |
(Abstract) (PDF)
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Comment les Usagers Accedent a l'Information Medicale Aux USA: l'Exemple de MEDLINEplus [How Consumers Access Health Information in the USA: The MEDLINEplus Example] |
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Innovation et Technologie en Biologie et Medecine. 2000;21(5):286-90. |
(Abstract) (PDF)
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De la Classification à la Connaissance des Maladies: Une Réflexion à Partir de la Classification Internationale des Maladies [From Classification to Knowledge About Diseases: Thoughts about the International Classification of Diseases] |
Botti G, Bodenreider O, Burgun A, Le Beux P, Fieschi M
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Innovation et Technologie en Biologie et Médecine. 2000;21(5):291-97. |
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Identifying Proper Names in Parallel Medical Terminologies |
Bodenreider O, Zweigenbaum P
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Stud Health Technol Inform. 2000 ;77():443-7. |
(Abstract) (PDF)
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Modelling Syllepse in Medical Knowledge Bases with Application in the Domain of Organ Failure and Transplantation |
Jacquelinet C, Bodenreider O, Burgun A
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Proc. of OntoLex; Workshop on Ontologies and Lexical Knowledge Bases 2000. |
(Abstract) (PDF)
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Strategies d'Identification des Noms Propres a Partir de Nomenclatures Medicales Paralleles |
Bodenreider O, Zweigenbaum P
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Traitement Automatique des Langues. 2000;41(3):727-757. |
(Abstract) (PDF)
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Using UMLS Semantics for Classification Purposes |
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Proc AMIA Symp. 2000 ;():86-90. |
(Abstract) (PDF)
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