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GrainGenes: Maps and Map Data
Maps and Map Data
On this page:
Summary of Interactive Maps on GrainGenes A spreadsheet with all available maps, parents, marker type and number, and links to GrainGenes Map_Data records.
Wheat
Wheat: GrainGenes Database queries
Wheat
- C-bands of Chinese Spring From Gill et al., 1991
- Triticeae consensus map. Groups 1-3 and 6. From Van Deynze et al., 1995; Nelson et al., 1995; and Marino et al., 1996
- Triticum aestivum CS x CNN 1A map From Dubcovsky et al., 1995
- Triticum aestivum CS x CNN 1A mapping data From Dubcovsky et al., 1995
- Triticum durum x T. dicoccoides 6A, 6B map From Chen et al., 1994
- Triticum monococcum DV92 x G3116 map From Dubcovsky et al., 1996
- Triticum monococcum DV92 x G3116 mapping data From Jorge Dubcovsky, Feb 1996
- Triticum monococcum G1777 x G2528 1A^m^ map From Dubcovsky et al., 1995 and Van Deynze et al., 1995
- Triticum monococcum G1777 x G2528 1A^m^ mapping data From Dubcovsky and Dvorak, 1995
- Triticum monococcum x T. aestivum 1A map From Dubcovsky et al., 1995 and Van Deynze et al., 1995
- Triticum monococcum x T. aestivum 1A mapping data From Dubcovsky and Dvorak, 1995
- Triticum tauschii linkage data From Gill, 1993
- Triticum tauschii map From Gill et al., 1993
- Triticum tauschii mapping data From Gill, 1993
- Wheat CS x Spelta map From Liu and Tsunewaki, 1991
- Wheat W7984 x Opata85
- Wheat W7984 x Opata85 Update. From Sorrells and Bermudez, 2000
- Wheat consensus map From Gale et al., 1995
- Wheat gene map From Hart et al., 1993
- XNor regions of group 1 and 5 chromosomes From Dubcovsky and Dvorak, 1995
- Nomenclature of Biochemical and Molecular Loci in Wheat From Hart, 1994
Wheat: WWW Documents
- Chromosome aberrations in "Chinese Spring" genetic stocks
Deletions, misidentifications and other things to be aware of when mapping with the classic CS nullisomic-tetrasomic and ditelosomic stocks. From Katrien Devos.
- Komugi electronic version of the Wheat Gene Catalogue.
- Catalogue of Gene Symbols for Wheat - 1998 edition
by R.A. McIntosh, G.E. Hart, K.M. Devos, M.D. Gale and W.J. Rogers
- Catalogue of Gene Symbols for Wheat - 1999 supplement
by R.A. McIntosh, G.E. Hart, K.M. Devos and W.J. Rogers
- Catalogue of Gene Symbols for Wheat - 2000 supplement
by R.A. McIntosh, K.M. Devos, J. Dubcovsky and W.J. Rogers
- GrainGenes Autoradiogram Images I: Polymorphisms mapped in the wheat synthetic W7984 x Opata M 85 mapping population, chromosomes 1-3, with links back to their GrainGenes Image records
- GrainGenes Autoradiogram Images II: Polymorphisms mapped in the wheat synthetic W7984 x Opata M 85 mapping population, chromosomes 4, 5, 6, and 7, with links back to their GrainGenes Image records
- Aegilops tauschii markers From the high-resolution map of Boyko et al. 1998
Wheat: Maps as Line drawings
- Appels, Comparative map of chromosome 1D, T.tauschii and T.aestivum
- Map of T.tauschii chromosome 1D
- 1B physical vs. genetic maps 1B physical vs. genetic maps
- Group 1 map comparison, part 1
- Group 1 map comparison, part 2
- Synthetic x Opata group 1 maps
- Synthetic x Opata group 2 maps
- Synthetic x Opata group 3 maps
- Synthetic x Opata group 4 maps
- Synthetic x Opata group 5 maps
- Synthetic x Opata group 6A map
- Synthetic x Opata group 6B map
- Synthetic x Opata group 6D map
- Synthetic x Opata group 7 maps
- Triticeae group 1 consensus, Sorrells
- Triticeae group 2 consensus, Sorrells
- Triticeae group 3 consensus, Sorrells
- Triticeae group 6 consensus, Hart
- 1R physical vs. genetic maps
- Ahn-S, 1993 Fig. 1
- Ahn-S, 1993 Fig. 2
- CS C-bands, A genome
- CS C-bands, B genome
- CS C-bands, D genome
- Dubcovsky, 1995 Fig. 1a
- Dubcovsky, 1995 Fig. 1b
- Triticeae 1 vs. rice 5, 10 vs. oat A
- Wheat group 1 genes
- Wheat group 2 genes
- Wheat group 3 genes
- Wheat group 4 genes
- Wheat group 5 genes
- Wheat group 6 genes
- Wheat group 7 genes
Barley
Barley: GrainGenes Database queries
Barley
- Barley 2H and 3H maps from David Laurie From Laurie et al., 1993
- Barley Chebec x Harrington map From Peter Langridge et al., Sep 1996
- Barley Chebec x Harrington mapping data From Peter Langridge et al., Sep 1996
- Barley Clipper x Sahara map From Peter Langridge et al., Sep 1996
- Barley Clipper x Sahara mapping data From Peter Langridge et al., Sep 1996
- Barley Galleon x Haruna nijo map From Peter Langridge et al., Sep 1996
- Barley Galleon x Haruna nijo mapping data From Peter Langridge et al., Sep 1996
- Barley Harrington x TR306 QTL dataset From Kasha et al., 1995 and Tinker et al., in press
- Barley Harrington x TR306 map From Kleinhofs, 1994
- Barley Harrington x TR306 mapping data From Kleinhofs, 1994
- Barley Igri x Franka map From Graner et al., 1991 and 1994
- Barley Igri x Franka mapping data From Graner, 1994
- Barley Igri x Triumph flowering-time map From Laurie et al., 1995
- Barley, L94 x Vada map From Qi, 1998
- Barley NABGMP probes and markers From Kleinhofs, 1994-1997.
For the most current version, see the Barley Genomics site at WSU
- Barley Proctor x Nudinka AFLP autoradiogram (110 KBytes) .jpg From Heun, 1996. Description
- Barley Proctor x Nudinka AFLP, RFLP map From Becker et al., 1995
- Barley Proctor x Nudinka AFLP, RFLP mapping data From Heun, 1996 and Becker et al., 1995
- Barley Steptoe x Morex NABGMP trait dataset (Steptoe x Morex Barley Mapping Population)
- Barley Steptoe x Morex and Harrington x TR306 basemaps From Mather, 1995. See further information here and here.
- Barley Steptoe x Morex map From Kleinhofs, 1993
- Barley Steptoe x Morex mapping data From Kleinhofs, 1994
- Barley VADA x H. Spontaneum map From Graner, 1991
- Barley Vogelsanger Gold x Alf map From Giese et al., 1994 and Jensen, 1987
- Barley Vogelsanger Gold x Tystofte Prentice map From Giese, 1995
- Barley chromosome numbering reference card
- Barley consensus map, Adelaide From Langridge, 1995
- Barley consensus map, Adelaide, imagesFrom Langridge, 1995
- Barley consensus map, Wageningen From Qi, 1996
- Barley gene map From Franckowiak, 1995; Forster, 1996; and Jensen, 1996
- Barley gene map images From Franckowiak, 1995; Forster, 1996; and Jensen, 1996
- Barley gene map, 7-chromosome From Jerry Franckowiak and Udda Lundqvist, Nov 1996
- Barley gene map, 7-chromosome, images From Jerry Franckowiak and Udda Lundqvist, Nov 1996
Barley: WWW Documents
Note: Polymorphism datasets that include both mapped and unmapped polymorphisms are listed both here on the Maps and Map Data page and on the Germplasm and Genetic Stocks page.
- Barley physical/genetic map Translocation breakpoints vs. markers mapped in Igri x Franka. From Gottfried Kuenzel.
- Table of STS Primers Used for PCR-Mapping of Translocation Breakpoints In Barley. This table, provided by Gottfried Kuenzel, lists the RFLP clone names, STS primer sequences, amplified fragment length, annealing temperature and provides links to the GrainGenes or EMBL records of the clone sequences.
- Development of AFLP Markers in Barley Sixteen barley lines x 34 primer combinations. From Xiaoquan Qi and Pim Lindhout, MGG 254:330, 1997. Used in the L94 x Vada AFLP map.
- Barley Mapping and QTL Analysis of Three Populations from the University of Adelaide Mapping and QTL analysis for three populations are provided: (1) Galleon x Haruna nijo; (2) Chebec x Harrington; and (3) Clipper x Sahara. QTL analyses are provided for phenotypes of alpha-amylase (all), beta amylase (all), glucanase (all), free-limit dextrinase (1,2), total limit dextrinase (1,2), awn emergence (2), juvenile stage (2), leaf number (2), plant height (2), 1000 kernel weight (2), seed dormancy (2), seed length (2), seed width (2), seed length/width ratio (2), CCN resistance (2), and cyst nematode resistance (3)
- Barley Harrington/TR306 QTL Study Contains phenotypic data for the DH progeny, including info on grain yield, days to heading, days to maturity, plant height, lodging severity, kernel weight, test weight, and map and marker files
- The Steptoe x Morex Barley Mapping Population From Hayes et al., 1996
- The Dicktoo x Morex Barley Mapping Population From Hayes et al., 1997
- The Harrington x Morex Barley Mapping Population From Hayes et al., 2001
- The Shiri x Galena Barley Mapping Population From Hayes et al., 2001
- Wheat/Barley Addition Line PCR Gels from STS Primers: From Tom Blake's barley genetics lab at Montana State University. Also has web-formatted barley genetics articles and data
- Polymorphisms for markers linked to Rpt4, resistance to spot form of net blotch From Kevin Williams, South Australian Research and Development Institute (SARDI).
- Barley Genetics Newsletters Published by the American Malting Barley Association
Barley: Maps as line drawings
Barley: Information from other Internet Sites
Rye
Rye: GrainGenes Database queries
Rye
Rye: WWW Documents
Oats
Oats: GrainGenes Database queries
Oats
Oats: WWW Documents
Oats: Maps as Line Drawings
- Linkage groups A and B from A.atlantica x A.hirtula
- Linkage groups C and D from A.atlantica x A.hirtula
- Linkage groups E, F, and G from A.atlantica x A.hirtula
- Linkage groups A, B, and C from A.atlantica x A.hirtula with conserved segments from homoeologous Triticeae chromosomes superimposed
- Linkage groups D, E, F, and G from A.atlantica x A.hirtula with conserved segments from homoeologous Triticeae chromosomes superimposed
- Linkage groups A, B, and C from A.atlantica x A.hirtula with conserved segments from homoeologous rice chromosomes superimposed
- Linkage groups D, E, F, and G from A.atlantica x A.hirtula with conserved segments from homoeologous rice chromosomes superimposed
- Linkage groups A, B, and C from A.atlantica x A.hirtula with conserved segments from homoeologous maize chromosomes superimposed
- Linkage groups D, E, F, and G from A.atlantica x A.hirtula with conserved segments from homoeologous maize chromosomes superimposed
- Oat KxO linkage groups 1 and 2
- Oat KxO linkage groups 3 and 4
- Oat KxO linkage groups 5 and 6
- Oat KxO linkage groups 7, 8, and 9
- Oat KxO linkage groups 10, 11, and 12
- Oat KxO linkage groups 13 and 14
- Oat KxO linkage groups 15 and 16
- Oat KxO linkage groups 17, 18, and 19
- Oat KxO linkage groups 20 and 21
- Oat KxO linkage groups 22 and 23
- Oat KxO linkage groups 24, 25, and 26
- Oat KxO linkage groups 27, 28, and 29
- Oat KxO linkage groups 30, 31, and 32
- Oat KxO linkage groups 33, 34, and 35
- Oat KxO linkage groups 36, 37, and 38
- Triticeae 1 vs. rice 5, 10 vs. oat A
Sugarcane
Sugarcane: GrainGenes Database queries
Sugarcane
Sugarcane: Maps as Line Drawings
Cross-species
Cross-species: GrainGenes Database Queries
Cross-species
Cross-species: WWW Documents
Cross-species: Maps as Line Drawings
Cross-species: Information from other Internet sites
- Grains-related
- Plant-related
- Biology-related
- QTL Cartographer QTL Cartographer can perform many analyses for mapping QTL, including interval mapping, composite interval mapping and multiple traits/environments analysis. All of the information about QTL Cartographer is on-line, including the detailed manual. There is also a very user-friendly Windows version of QTL Cartographer. Best of all, it's free.
- Molecular Biologist's Desk Reference contains reference information about the genetic code, amino acids and proteins, molecular biology protocols, and related journals
- GenomeNet from Japan Includes a superbly integrated set of databases collectively called DBGET. Japan's finest
- Johns Hopkins University Bioinformatics Webserver Allows you to make searches on Prot-Web, a collection of Protein Databases which includes OWL, NRL_3D, PIR(1-3), EC-Enzyme, GenQuest, and REBASE
- Medline Subset in Molecular Genetics Can be searched using this easy-to-fill-in form. Approximately 700,000 citations are included in this subset. Very highly recommended
- Molecular Biologist's Desk Reference Contains reference information about the genetic code, amino acids and proteins, molecular biology protocols, and related journals
- National Institutes of Health Molecular Biology Databases NIH provides this page of links to databases specializing in DNA and protein sequences
- Pedro's Biomolecular Research Tools
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