| | Other Issues: previous | next | latest | archiveDatabase VitisExpDB: A database resource for grape functional genomics Harshavardhan Doddapaneni, Hong Lin, M Andrew Walker, Jiqiang Yao, and Edwin L Civerolo PMCID: PMC2359749 TriMEDB: A database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae Keiichi Mochida, Daisuke Saisho, Takuhiro Yoshida, Tetsuya Sakurai, and Kazuo Shinozaki PMCID: PMC2474609 Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome Hyun-Jin Kim, Kwang-Hyun Baek, Seung-Won Lee, JungEun Kim, Bong-Woo Lee, Hye-Sun Cho, Woo Taek Kim, Doil Choi, and Cheol-Goo Hur PMCID: PMC2575210 RICD: A rice indica cDNA database resource for rice functional genomics Tingting Lu, Xuehui Huang, Chuanrang Zhu, Tao Huang, Qiang Zhao, Kabing Xie, Lizhong Xiong, Qifa Zhang, and Bin Han PMCID: PMC2605458 Software Development of a novel data mining tool to find cis-elements in rice gene promoter regions Koji Doi, Aeni Hosaka, Toshifumi Nagata, Kouji Satoh, Kohji Suzuki, Ramil Mauleon, Michael J Mendoza, Richard Bruskiewich, and Shoshi Kikuchi PMCID: PMC2270273 LAMINA: a tool for rapid quantification of leaf size and shape parameters Max Bylesjö, Vincent Segura, Raju Y Soolanayakanahally, Anne M Rae, Johan Trygg, Petter Gustafsson, Stefan Jansson, and Nathaniel R Street PMCID: PMC2500018 Research Articles Bioinformatic analysis of the CLE signaling peptide family Karsten Oelkers, Nicolas Goffard, Georg F Weiller, Peter M Gresshoff, Ulrike Mathesius, and Tancred Frickey PMCID: PMC2254619 Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds Jeppe Reitan Andersen, Imad Zein, Gerhard Wenzel, Birte Darnhofer, Joachim Eder, Milena Ouzunova, and Thomas Lübberstedt PMCID: PMC2265712 Different subcellular localizations and functions of Arabidopsis myosin VIII Lior Golomb, Mohamad Abu-Abied, Eduard Belausov, and Einat Sadot PMCID: PMC2275265 Evolution of the C4 phosphoenolpyruvate carboxylase promoter of the C4 species Flaveria trinervia: the role of the proximal promoter region Sascha Engelmann, Corinna Zogel, Maria Koczor, Ute Schlue, Monika Streubel, and Peter Westhoff PMCID: PMC2241601 Quantitative 1H NMR metabolomics reveals extensive metabolic reprogramming of primary and secondary metabolism in elicitor-treated opium poppy cell cultures Katherine G Zulak, Aalim M Weljie, Hans J Vogel, and Peter J Facchini PMCID: PMC2257952 A high-throughput screening system for barley/powdery mildew interactions based on automated analysis of light micrographs Alexander Ihlow, Patrick Schweizer, and Udo Seiffert PMCID: PMC2262080 Identification of Single Nucleotide Polymorphisms and analysis of Linkage Disequilibrium in sunflower elite inbred lines using the candidate gene approach Corina M Fusari, Verónica V Lia, H Esteban Hopp, Ruth A Heinz, and Norma B Paniego PMCID: PMC2266750 Sgt1, but not Rar1, is essential for the RB-mediated broad-spectrum resistance to potato late blight Pudota B Bhaskar, John A Raasch, Lara C Kramer, Pavel Neumann, Susan M Wielgus, Sandra Austin-Phillips, and Jiming Jiang PMCID: PMC2267190 TILLING to detect induced mutations in soybean Jennifer L Cooper, Bradley J Till, Robert G Laport, Margaret C Darlow, Justin M Kleffner, Aziz Jamai, Tarik El-Mellouki, Shiming Liu, Rae Ritchie, Niels Nielsen, Kristin D Bilyeu, Khalid Meksem, Luca Comai, and Steven Henikoff PMCID: PMC2266751 Olive cultivar origin is a major cause of polymorphism for Ole e 1 pollen allergen AbdelMounim Hamman-Khalifa, Antonio Jesús Castro, José Carlos Jiménez-López, María Isabel Rodríguez-García, and Juan de Dios Alché PMCID: PMC2275730 Transcriptomic identification of candidate genes involved in sunflower responses to chilling and salt stresses based on cDNA microarray analysis Paula Fernandez, Julio Di Rienzo, Luis Fernandez, H Esteban Hopp, Norma Paniego, and Ruth A Heinz PMCID: PMC2265713 Light has a specific role in modulating Arabidopsis gene expression at low temperature Arto J Soitamo, Mirva Piippo, Yagut Allahverdiyeva, Natalia Battchikova, and Eva-Mari Aro PMCID: PMC2253524 BAC libraries construction from the ancestral diploid genomes of the allotetraploid cultivated peanut Patricia M Guimarães, Olivier Garsmeur, Karina Proite, Soraya CM Leal-Bertioli, Guilhermo Seijo, Christian Chaine, David J Bertioli, and Angelique D'Hont PMCID: PMC2254395 Analysis of non-TIR NBS-LRR resistance gene analogs in Musa acuminata Colla: Isolation, RFLP marker development, and physical mapping Robert NG Miller, David J Bertioli, Franc C Baurens, Candice MR Santos, Paulo C Alves, Natalia F Martins, Roberto C Togawa, Manoel T Souza, Júnior, and Georgios J Pappas, Júnior PMCID: PMC2262081 Global gene expression analysis of apple fruit development from the floral bud to ripe fruit Bart J Janssen, Kate Thodey, Robert J Schaffer, Rob Alba, Lena Balakrishnan, Rebecca Bishop, Judith H Bowen, Ross N Crowhurst, Andrew P Gleave, Susan Ledger, Steve McArtney, Franz B Pichler, Kimberley C Snowden, and Shayna Ward PMCID: PMC2287172 Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes Bing-Bing Wang, Mike O'Toole, Volker Brendel, and Nevin D Young PMCID: PMC2277414 Characterization of paralogous protein families in rice Haining Lin, Shu Ouyang, Amy Egan, Kan Nobuta, Brian J Haas, Wei Zhu, Xun Gu, Joana C Silva, Blake C Meyers, and C Robin Buell PMCID: PMC2275729 Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor Gregory Heller, Aleksandra Adomas, Guosheng Li, Jason Osborne, Len van Zyl, Ron Sederoff, Roger D Finlay, Jan Stenlid, and Frederick O Asiegbu PMCID: PMC2268937 Transcriptional profiling of Medicago truncatula meristematic root cells Peta Holmes, Nicolas Goffard, Georg F Weiller, Barry G Rolfe, and Nijat Imin PMCID: PMC2277415 AtMRP6/AtABCC6, an ATP-Binding Cassette transporter gene expressed during early steps of seedling development and up-regulated by cadmium in Arabidopsis thaliana Stéphane Gaillard, Hélène Jacquet, Alain Vavasseur, Nathalie Leonhardt, and Cyrille Forestier PMCID: PMC2291051 Co-expression and promoter content analyses assign a role in biotic and abiotic stress responses to plant natriuretic peptides Stuart Meier, René Bastian, Lara Donaldson, Shane Murray, Vladimir Bajic, and Chris Gehring PMCID: PMC2268938 Identification of novel and candidate miRNAs in rice by high throughput sequencing Ramanjulu Sunkar, Xuefeng Zhou, Yun Zheng, Weixiong Zhang, and Jian-Kang Zhu PMCID: PMC2292181 Rice Yellow Mottle Virus stress responsive genes from susceptible and tolerant rice genotypes Marjolaine Ventelon-Debout, Christine Tranchant-Dubreuil, Thi-Thu-Huang Nguyen, Martine Bangratz, Christelle Siré, Michel Delseny, and Christophe Brugidou PMCID: PMC2275266 Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages MA Rouf Mian, Yan Zhang, Zeng-Yu Wang, Ji-Yi Zhang, Xiaofei Cheng, Lei Chen, Konstantin Chekhovskiy, Xinbin Dai, Chunhong Mao, Foo Cheung, Xuechun Zhao, Ji He, Angela D Scott, Christopher D Town, and Gregory D May PMCID: PMC2323379 Rapid EST isolation from chromosome 1R of rye Ruo-Nan Zhou, Rui Shi, Shu-Mei Jiang, Wei-Bo Yin, Huang-Huang Wang, Yu-Hong Chen, Jun Hu, Richard RC Wang, Xiang-Qi Zhang, and Zan-Min Hu PMCID: PMC2322994 The soybean-Phytophthora resistance locus Rps1-k encompasses coiled coil-nucleotide binding-leucine rich repeat-like genes and repetitive sequences Hongyu Gao and Madan K Bhattacharyya PMCID: PMC2330051 Two alternative recessive quantitative trait loci influence resistance to spring black stem and leaf spot in Medicago truncatula Lars G Kamphuis, Judith Lichtenzveig, Richard P Oliver, and Simon R Ellwood PMCID: PMC2324085 Construction of nested genetic core collections to optimize the exploitation of natural diversity in Vitis vinifera L. subsp. sativa Loïc Le Cunff, Alexandre Fournier-Level, Valérie Laucou, Silvia Vezzulli, Thierry Lacombe, Anne-Françoise Adam-Blondon, Jean-Michel Boursiquot, and Patrice This PMCID: PMC2375891 Spatial distribution of transcript changes in the maize primary root elongation zone at low water potential William G Spollen, Wenjing Tao, Babu Valliyodan, Kegui Chen, Lindsey G Hejlek, Jong-Joo Kim, Mary E LeNoble, Jinming Zhu, Hans J Bohnert, David Henderson, Daniel P Schachtman, Georgia E Davis, Gordon K Springer, Robert E Sharp, and Henry T Nguyen PMCID: PMC2364623 Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis Robert M Stupar, Jack M Gardiner, Aaron G Oldre, William J Haun, Vicki L Chandler, and Nathan M Springer PMCID: PMC2365949 Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato Erwin Datema, Lukas A Mueller, Robert Buels, James J Giovannoni, Richard GF Visser, Willem J Stiekema, and Roeland CHJ van Ham PMCID: PMC2324086 Arabidopsis thaliana outer ovule integument morphogenesis: Ectopic expression of KNAT1 reveals a compensation mechanism Elisabeth Truernit and Jim Haseloff PMCID: PMC2330050 Phenotypic instability of Arabidopsis alleles affecting a disease Resistance gene cluster Hankuil Yi and Eric J Richards PMCID: PMC2374787 In silico identification of conserved microRNAs in large number of diverse plant species Ramanjulu Sunkar and Guru Jagadeeswaran PMCID: PMC2358906 Berry and phenology-related traits in grapevine (Vitis vinifera L.): From Quantitative Trait Loci to underlying genes Laura Costantini, Juri Battilana, Flutura Lamaj, Girolamo Fanizza, and Maria Stella Grando PMCID: PMC2395262 Metabolic pathways of the wheat (Triticum aestivum) endosperm amyloplast revealed by proteomics Frances M Dupont PMCID: PMC2383896 Ornithine-δ-aminotransferase is essential for Arginine Catabolism but not for Proline Biosynthesis Dietmar Funck, Bettina Stadelhofer, and Wolfgang Koch PMCID: PMC2377265 The IBR5 phosphatase promotes Arabidopsis auxin responses through a novel mechanism distinct from TIR1-mediated repressor degradation Lucia C Strader, Melanie Monroe-Augustus, and Bonnie Bartel PMCID: PMC2374786 Overexpression of mtDNA-associated AtWhy2 compromises mitochondrial function Alexandre Maréchal, Jean-Sébastien Parent, Mohammed Sabar, Félix Véronneau-Lafortune, Charbel Abou-Rached, and Normand Brisson PMCID: PMC2377264 A spatial dissection of the Arabidopsis floral transcriptome by MPSS Jason A Peiffer, Shail Kaushik, Hajime Sakai, Mario Arteaga-Vazquez, Nidia Sanchez-Leon, Hassan Ghazal, Jean-Philippe Vielle-Calzada, and Blake C Meyers PMCID: PMC2375892 Characterisation of the tryptophan synthase alpha subunit in maize Verena Kriechbaumer, Linda Weigang, Andreas Fießelmann, Thomas Letzel, Monika Frey, Alfons Gierl, and Erich Glawischnig PMCID: PMC2395261 Unexpected complexity of the Aquaporin gene family in the moss Physcomitrella patens Jonas ÅH Danielson and Urban Johanson PMCID: PMC2386804 Transcriptomic changes induced by acute ozone in resistant and sensitive Medicago truncatula accessions Michael C Puckette, Yuhong Tang, and Ramamurthy Mahalingam PMCID: PMC2395263 An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana Jürgen Ehlting, Vincent Sauveplane, Alexandre Olry, Jean-François Ginglinger, Nicholas J Provart, and Danièle Werck-Reichhart PMCID: PMC2383897 The redox-sensitive transcription factor Rap2.4a controls nuclear expression of 2-Cys peroxiredoxin A and other chloroplast antioxidant enzymes Jehad Shaikhali, Isabelle Heiber, Thorsten Seidel, Elke Ströher, Heiko Hiltscher, Stefan Birkmann, Karl-Josef Dietz, and Margarete Baier PMCID: PMC2386467 The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice Calliste J Diédhiou, Olga V Popova, Karl-Josef Dietz, and Dortje Golldack PMCID: PMC2386468 Cupin: A candidate molecular structure for the Nep1-like protein family Adelmo L Cechin, Marialva Sinigaglia, Ney Lemke, Sérgio Echeverrigaray, Odalys G Cabrera, Gonçalo AG Pereira, and José CM Mombach PMCID: PMC2396628 Development of new genomic microsatellite markers from robusta coffee (Coffea canephora Pierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies Prasad Suresh Hendre, Regur Phanindranath, V Annapurna, Albert Lalremruata, and Ramesh K Aggarwal PMCID: PMC2396172 A flax fibre proteome: identification of proteins enriched in bast fibres Naomi SC Hotte and Michael K Deyholos PMCID: PMC2408578 Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures Alberto Iandolino, Kan Nobuta, Francisco Goes da Silva, Douglas R Cook, and Blake C Meyers PMCID: PMC2423195 Control of trichome branching by Chromatin Assembly Factor-1 Vivien Exner, Wilhelm Gruissem, and Lars Hennig PMCID: PMC2413220 Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea) Luu M Cuc, Emma S Mace, Jonathan H Crouch, Vu D Quang, Tran D Long, and Rajeev K Varshney PMCID: PMC2416452 Complementation of a phycocyanin-bilin lyase from Synechocystis sp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyte Guillardia theta Kathrin Bolte, Oliver Kawach, Julia Prechtl, Nicole Gruenheit, Julius Nyalwidhe, and Uwe-G Maier PMCID: PMC2408579 Insight into the early steps of root hair formation revealed by the procuste1 cellulose synthase mutant of Arabidopsis thaliana Sunil K Singh, Urs Fischer, Manoj Singh, Markus Grebe, and Alan Marchant PMCID: PMC2396171 Constitutive Expressor of Pathogenesis-Related Genes5 affects cell wall biogenesis and trichome development Ginger Brininstool, Remmy Kasili, L Alice Simmons, Viktor Kirik, Martin Hülskamp, and John C Larkin PMCID: PMC2409340 Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale – A wild ancestor of cultivated buckwheat Maria D Logacheva, Tahir H Samigullin, Amit Dhingra, and Aleksey A Penin PMCID: PMC2430205 Pectic homogalacturonan masks abundant sets of xyloglucan epitopes in plant cell walls Susan E Marcus, Yves Verhertbruggen, Cécile Hervé, José J Ordaz-Ortiz, Vladimir Farkas, Henriette L Pedersen, William GT Willats, and J Paul Knox PMCID: PMC2409341 Global expression profiling in leaves of free-growing aspen Andreas Sjödin, Kirsten Wissel, Max Bylesjö, Johan Trygg, and Stefan Jansson PMCID: PMC2416451 Oil palm (Elaeis guineensis Jacq.) tissue culture ESTs: Identifying genes associated with callogenesis and embryogenesis Eng-Ti L Low, Halimah Alias, Soo-Heong Boon, Elyana M Shariff, Chi-Yee A Tan, Leslie CL Ooi, Suan-Choo Cheah, Abdul-Rahim Raha, Kiew-Lian Wan, and Rajinder Singh PMCID: PMC2442076 Rapid and dynamic subcellular reorganization following mechanical stimulation of Arabidopsis epidermal cells mimics responses to fungal and oomycete attack Adrienne R Hardham, Daigo Takemoto, and Rosemary G White PMCID: PMC2435237 Loss of the N-terminal domain of chlorophyllide a oxygenase induces photodamage during greening of Arabidopsis seedlings Akihiro Yamasato, Ryouichi Tanaka, and Ayumi Tanaka PMCID: PMC2435540 The effects of enhanced methionine synthesis on amino acid and anthocyanin content of potato tubers Gábor Dancs, Mihály Kondrák, and Zsófia Bánfalvi PMCID: PMC2438360 A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance Marco Moroldo, Sophie Paillard, Raffaella Marconi, Legeai Fabrice, Aurelie Canaguier, Corinne Cruaud, Veronique De Berardinis, Cecile Guichard, Veronique Brunaud, Isabelle Le Clainche, Simone Scalabrin, Raffaele Testolin, Gabriele Di Gaspero, Michele Morgante, and Anne-Francoise Adam-Blondon PMCID: PMC2442077 Synteny conservation between two distantly-related Rosaceae genomes: Prunus (the stone fruits) and Fragaria (the strawberry) Santiago Vilanova, Daniel J Sargent, Pere Arús, and Amparo Monfort PMCID: PMC2442709 Roles of Arabidopsis WRKY3 and WRKY4 Transcription Factors in Plant Responses to Pathogens Zhibing Lai, KM Vinod, Zuyu Zheng, Baofang Fan, and Zhixiang Chen PMCID: PMC2464603 A blackberry (Rubus L.) expressed sequence tag library for the development of simple sequence repeat markers Kim S Lewers, Chris A Saski, Brandon J Cuthbertson, David C Henry, Meg E Staton, Dorrie S Main, Anik L Dhanaraj, Lisa J Rowland, and Jeff P Tomkins PMCID: PMC2474608 Complete nucleotide sequence of the Cryptomeria japonica D. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species Tomonori Hirao, Atsushi Watanabe, Manabu Kurita, Teiji Kondo, and Katsuhiko Takata PMCID: PMC2443145 Expression of cell wall related genes in basal and ear internodes of silking brown-midrib-3, caffeic acid O-methyltransferase (COMT) down-regulated, and normal maize plants Sabine Guillaumie, Deborah Goffner, Odile Barbier, Jean-Pierre Martinant, Magalie Pichon, and Yves Barrière PMCID: PMC2453129 Transcriptional profiling of the pea shoot apical meristem reveals processes underlying its function and maintenance Chui E Wong, Prem L Bhalla, Harald Ottenhof, and Mohan B Singh PMCID: PMC2478663 Head-neck domain of Arabidopsis myosin XI, MYA2, fused with GFP produces F-actin patterns that coincide with fast organelle streaming in different plant cells Nadine Walter and Carola L Holweg PMCID: PMC2504477 Vv-AMP1, a ripening induced peptide from Vitis vinifera shows strong antifungal activity Abré de Beer and Melané A Vivier PMCID: PMC2492866 Articulation of three core metabolic processes in Arabidopsis: Fatty acid biosynthesis, leucine catabolism and starch metabolism Wieslawa I Mentzen, Jianling Peng, Nick Ransom, Basil J Nikolau, and Eve Syrkin Wurtele PMCID: PMC2483283 The Arabidopsis thaliana response regulator ARR22 is a putative AHP phospho-histidine phosphatase expressed in the chalaza of developing seeds Jakub Horák, Christopher Grefen, Kenneth W Berendzen, Achim Hahn, York-Dieter Stierhof, Bettina Stadelhofer, Mark Stahl, Csaba Koncz, and Klaus Harter PMCID: PMC2478664 Variation in DNA methylation patterns of grapevine somaclones (Vitis vinifera L.) Paul Schellenbaum, Volker Mohler, Gerhard Wenzel, and Bernard Walter PMCID: PMC2491626 Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles Kei Yura and Mitiko Go PMCID: PMC2488346 Quantitative analysis of changes in actin microfilament contribution to cell plate development in plant cytokinesis Takumi Higaki, Natsumaro Kutsuna, Toshio Sano, and Seiichiro Hasezawa PMCID: PMC2490694 Comprehensive analysis of single-repeat R3 MYB proteins in epidermal cell patterning and their transcriptional regulation in Arabidopsis Shucai Wang, Leah Hubbard, Ying Chang, Jianjun Guo, John Schiefelbein, and Jin-Gui Chen PMCID: PMC2492867 Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes José Tomás Matus, Felipe Aquea, and Patricio Arce-Johnson PMCID: PMC2507771 Genomic and expression analysis of glycosyl hydrolase family 35 genes from rice (Oryza sativa L.) Waraporn Tanthanuch, Mallika Chantarangsee, Janjira Maneesan, and James Ketudat-Cairns PMCID: PMC2531105 Plant-like substitutions in the large-subunit carboxy terminus of Chlamydomonas Rubisco increase CO2/O2 Specificity Sriram Satagopan and Robert J Spreitzer PMCID: PMC2527014 The plant Apolipoprotein D ortholog protects Arabidopsis against oxidative stress Jean-Benoit F Charron, Francois Ouellet, Mario Houde, and Fathey Sarhan PMCID: PMC2527315 Transcriptional responses of Arabidopsis thaliana plants to As (V) stress Jason M Abercrombie, Matthew D Halfhill, Priya Ranjan, Murali R Rao, Arnold M Saxton, Joshua S Yuan, and C Neal Stewart, Jr PMCID: PMC2547109 Relationship between homoeologous regulatory and structural genes in allopolyploid genome – A case study in bread wheat Elena K Khlestkina, Marion S Röder, and Elena A Salina PMCID: PMC2538534 Physiological and molecular characterization of aluminum resistance in Medicago truncatula Divya Chandran, Natasha Sharopova, Kathryn A VandenBosch, David F Garvin, and Deborah A Samac PMCID: PMC2533010 Survey of extrachromosomal circular DNA derived from plant satellite repeats Alice Navrátilová, Andrea Koblížková, and Jiří Macas PMCID: PMC2543021 Transcriptional profiling of pea ABR17 mediated changes in gene expression in Arabidopsis thaliana Sowmya S Krishnaswamy, Sanjeeva Srivastava, Mohsen Mohammadi, Muhammad H Rahman, Michael K Deyholos, and Nat NV Kav PMCID: PMC2559843 Natural variation in DNA methylation in ribosomal RNA genes of Arabidopsis thaliana Hye Ryun Woo and Eric J Richards PMCID: PMC2551617 Small RNA regulation of ovule development in the cotton plant, G. hirsutum L Ibrokhim Y Abdurakhmonov, Eric J Devor, Zabardast T Buriev, Lingyan Huang, Abdusalom Makamov, Shukhrat E Shermatov, Tohir Bozorov, Fakhriddin N Kushanov, Gafurjon T Mavlonov, and Abdusattor Abdukarimov PMCID: PMC2564936 A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: Confirmed actors and newcomers Muhammad Irshad, Hervé Canut, Gisèle Borderies, Rafael Pont-Lezica, and Elisabeth Jamet PMCID: PMC2551616 A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R Jan Bartoš, Etienne Paux, Robert Kofler, Miroslava Havránková, David Kopecký, Pavla Suchánková, Jan Šafář, Hana Šimková, Christopher D Town, Tamas Lelley, Catherine Feuillet, and Jaroslav Doležel PMCID: PMC2565679 Overlapping functions of the starch synthases SSII and SSIII in amylopectin biosynthesis in Arabidopsis Xiaoli Zhang, Nicolas Szydlowski, David Delvallé, Christophe D'Hulst, Martha G James, and Alan M Myers PMCID: PMC2566982 Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense Almudena Castillo, Hikmet Budak, Rajeev K Varshney, Gabriel Dorado, Andreas Graner, and Pilar Hernandez PMCID: PMC2569940 Cloning, characterisation and comparative analysis of a starch synthase IV gene in wheat: functional and evolutionary implications Marina Leterrier, Lynn D Holappa, Karen E Broglie, and Diane M Beckles PMCID: PMC2576272 Regulon organization of Arabidopsis Wieslawa I Mentzen and Eve Syrkin Wurtele PMCID: PMC2567982 RNAi-directed downregulation of OsBADH2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.) Xiangli Niu, Wei Tang, Weizao Huang, Guangjun Ren, Qilin Wang, Di Luo, Yingyong Xiao, Shimei Yang, Feng Wang, Bao-Rong Lu, Fangyuan Gao, Tiegang Lu, and Yongsheng Liu PMCID: PMC2588449 Transgenic rice expressing Allium sativum leaf agglutinin (ASAL) exhibits high-level resistance against major sap-sucking pests Bharathi Yarasi, Vijayakumar Sadumpati, China Pasalu Immanni, Dasavantha Reddy Vudem, and Venkateswara Rao Khareedu PMCID: PMC2579298 Identification, cloning and characterization of sis7 and sis10 sugar-insensitive mutants of Arabidopsis Yadong Huang, Chun Yao Li, Kelly D Biddle, and Susan I Gibson PMCID: PMC2579432 Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana Heather I McKhann, Carine Gery, Aurélie Bérard, Sylvie Lévêque, Ellen Zuther, Dirk K Hincha, S De Mita, Dominique Brunel, and Evelyne Téoulé PMCID: PMC2579297 Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.) Hari D Upadhyaya, Sangam L Dwivedi, Michael Baum, Rajeev K Varshney, Sripada M Udupa, Cholenahalli LL Gowda, David Hoisington, and Sube Singh PMCID: PMC2583987 A novel screening protocol for the isolation of hydrogen producing Chlamydomonas reinhardtii strains Thilo Rühle, Anja Hemschemeier, Anastasios Melis, and Thomas Happe PMCID: PMC2576467 RACK1 genes regulate plant development with unequal genetic redundancy in Arabidopsis Jianjun Guo and Jin-Gui Chen PMCID: PMC2577656 Host-plant-mediated effects of Nadefensin on herbivore and pathogen resistance in Nicotiana attenuata Cbgowda Rayapuram and Ian T Baldwin PMCID: PMC2613890 Genome-wide transcriptional analysis of super-embryogenic Medicago truncatula explant cultures Nijat Imin, Nicolas Goffard, Mahira Nizamidin, and Barry G Rolfe PMCID: PMC2605756 Molecular population genetics and gene expression analysis of duplicated CBF genes of Arabidopsis thaliana Yen-Heng Lin, Shih-Ying Hwang, Po-Yen Hsu, Yu-Chung Chiang, Chun-Lin Huang, Chun-Neng Wang, and Tsan-Piao Lin PMCID: PMC2588587 Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR Shin-Young Hong, Pil Joon Seo, Moon-Sik Yang, Fengning Xiang, and Chung-Mo Park PMCID: PMC2588586 Systemic resistance and lipoxygenase-related defence response induced in tomato by Pseudomonas putida strain BTP1 Adam Akram, Marc Ongena, Francéline Duby, Jacques Dommes, and Philippe Thonart PMCID: PMC2596797 Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines Xiaomeng Ge, Weihua Chen, Shuhui Song, Weiwei Wang, Songnian Hu, and Jun Yu PMCID: PMC2596138 Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila Teruaki Taji, Tetsuya Sakurai, Keiichi Mochida, Atsushi Ishiwata, Atsushi Kurotani, Yasushi Totoki, Atsushi Toyoda, Yoshiyuki Sakaki, Motoaki Seki, Hirokazu Ono, Yoichi Sakata, Shigeo Tanaka, and Kazuo Shinozaki PMCID: PMC2621223 Assessment of allelic diversity in intron-containing Mal d 1 genes and their association to apple allergenicity Zhongshan Gao, Eric W van de Weg, Catarina I Matos, Paul Arens, Suzanne THP Bolhaar, Andre C Knulst, Yinghui Li, Karin Hoffmann-Sommergruber, and Luud JWJ Gilissen PMCID: PMC2596139 Morphological and molecular characterization of a spontaneously tuberizing potato mutant: an insight into the regulatory mechanisms of tuber induction Lukas Fischer, Helena Lipavska, Jean-Francois Hausman, and Zdenek Opatrny PMCID: PMC2613151 The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis David Latrasse, Moussa Benhamed, Yves Henry, Séverine Domenichini, Wanhui Kim, Dao-Xiu Zhou, and Marianne Delarue PMCID: PMC2606689 Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice Séverine Lacombe, Hiroshi Nagasaki, Carole Santi, David Duval, Benoît Piégu, Martine Bangratz, Jean-Christophe Breitler, Emmanuel Guiderdoni, Christophe Brugidou, Judith Hirsch, Xiaofeng Cao, Claire Brice, Olivier Panaud, Wojciech M Karlowski, Yutaka Sato, and Manuel Echeverria PMCID: PMC2607281 A putative autonomous 20.5 kb-CACTA transposon insertion in an F3'H allele identifies a new CACTA transposon subfamily in Glycine max Gracia Zabala and Lila Vodkin PMCID: PMC2613891 A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping Guido Cipriani, Maria Teresa Marrazzo, Gabriele Di Gaspero, Antonella Pfeiffer, Michele Morgante, and Raffaele Testolin PMCID: PMC2625351 Methodology Articles SNP high-throughput screening in grapevine using the SNPlex™ genotyping system Massimo Pindo, Silvia Vezzulli, Giuseppina Coppola, Dustin A Cartwright, Andrey Zharkikh, Riccardo Velasco, and Michela Troggio PMCID: PMC2268689 Applying genotyping (TILLING) and phenotyping analyses to elucidate gene function in a chemically induced sorghum mutant population Zhanguo Xin, Ming Li Wang, Noelle A Barkley, Gloria Burow, Cleve Franks, Gary Pederson, and John Burke PMCID: PMC2572618 |
