| | Articles SURVEY AND SUMMARY: Saccharomyces cerevisiae basic helix–loop–helix proteins regulate diverse biological processes Kelly A. Robinson and John M. Lopes PMCID: PMC102793 The C-terminal conserved domain of DNA-PKcs, missing in the SCID mouse, is required for kinase activity H. J. Beamish, R. Jessberger, E. Riballo, A. Priestley, T. Blunt, B. Kysela, and P. A. Jeggo PMCID: PMC102783 Characterization of an unusual tRNA-like sequence found inserted in a Neurospora retroplasmid Sabine Mohr, Leslie A. Wanner, Helmut Bertrand, and Alan M. Lambowitz PMCID: PMC117792 Cloning and characterization of the 5′-upstream sequence governing the cell cycle-dependent transcription of mouse DNA polymerase α 68 kDa subunit gene Naoko S. Nishikawa, Masako Izumi, Hiroshi Uchida, Masayuki Yokoi, Hiroshi Miyazawa, and Fumio Hanaoka PMCID: PMC102782 Interruption of the fragile X syndrome expanded sequence d(CGG)n by interspersed d(AGG) trinucleotides diminishes the formation and stability of d(CGG)n tetrahelical structures Pnina Weisman-Shomer, Esther Cohen, and Michael Fry PMCID: PMC102797 A missense mutation in the nuclear gene coding for the mitochondrial aspartyl-tRNA synthetase suppresses a mitochondrial tRNAAsp mutation Chuen-Sheue Chiang and Gwo-Jen Liaw PMCID: PMC102796 Molecular characterisation of two paralogous SPO11 homologues in Arabidopsis thaliana Frank Hartung and Holger Puchta PMCID: PMC102794 In vitro DNA synthesis opposite oxazolone and repair of this DNA damage using modified oligonucleotides Victor Duarte, Didier Gasparutto, Michel Jaquinod, and Jean Cadet PMCID: PMC102781 Identification of two human nuclear proteins that recognise the cytosine-rich strand of human telomeres in vitro Laurent Lacroix, Hélène Liénard, Emmanuel Labourier, Mojgan Djavaheri-Mergny, Jérôme Lacoste, Henrik Leffers, Jamal Tazi, Claude Hélène, and Jean-Louis Mergny PMCID: PMC102786 Scp160p, a multiple KH-domain protein, is a component of mRNP complexes in yeast Brian D. Lang and Judith L. Fridovich-Keil PMCID: PMC102792 Detection of N-H···N hydrogen bonding in RNA via scalar couplings in the absence of observable imino proton resonances Mirko Hennig and James R. Williamson PMCID: PMC102791 Positive and negative mutant selection in the human histone hairpin-binding protein using the yeast three-hybrid system Franck Martin, Fabrice Michel, Daniel Zenklusen, Berndt Müller, and Daniel Schümperli PMCID: PMC102788 Computational identification of cis-acting elements affecting post-transcriptional control of gene expression in Saccharomyces cerevisiae John S. Jacobs Anderson and Roy Parker PMCID: PMC102784 Kinetic analysis of high-mobility-group proteins HMG-1 and HMG-I/Y binding to cholesterol-tagged DNA on a supported lipid monolayer Carl I. Webster, Matthew A. Cooper, Leonard C. Packman, Dudley H. Williams, and John C. Gray PMCID: PMC102798 Initiation of translation by non-AUG codons in human T-cell lymphotropic virus type I mRNA encoding both Rex and Tax regulatory proteins Stéphanie Corcelette, Thierry Massé, and Jean-Jacques Madjar PMCID: PMC102795 NotI clones in the analysis of the human genome Eugene R. Zabarovsky, Rinat Gizatullin, Raf M. Podowski, Veronika V. Zabarovska, Li Xie, Olga V. Muravenko, Sergei Kozyrev, Lev Petrenko, Natalia Skobeleva, Jingfeng Li, Alexei Protopopov, Vladimir Kashuba, Ingemar Ernberg, Gösta Winberg, and Claes Wahlestedt PMCID: PMC102789 2-Hydroxy-dATP is incorporated opposite G by Escherichia coli DNA polymerase III resulting in high mutagenicity Hiroyuki Kamiya and Hiroshi Kasai PMCID: PMC102799 Human RecQ5β, a large isomer of RecQ5 DNA helicase, localizes in the nucleoplasm and interacts with topoisomerases 3α and 3β Akira Shimamoto, Kaori Nishikawa, Saori Kitao, and Yasuhiro Furuichi PMCID: PMC102787 In vivo, high-resolution analysis of yeast and mammalian RNA–protein interactions, RNA structure, RNA splicing and ribozyme cleavage by use of terminal transferase-dependent PCR Hsiu-Hua Chen, Daniela Castanotto, Jeanne M. LeBon, John J. Rossi, and Arthur D. Riggs PMCID: PMC102785 NAR Methods Online Rapid, high fidelity analysis of simple sequence repeats on an electronically active DNA microchip Ray Radtkey, Lana Feng, M. Muralhidar, Melanie Duhon, David Canter, Deborah DiPierro, Sylvia Fallon, Eugene Tu, Kevin McElfresh, Michael Nerenberg, and Ron Sosnowski PMCID: PMC102800 A method for quantification of absolute amounts of nucleic acids by (RT)–PCR and a new mathematical model for data analysis Huong L. Vu, Serge Troubetzkoy, Huan H. Nguyen, Michael W. Russell, and Jiri Mestecky PMCID: PMC102801 A new approach for the identification and cloning of genes: the pBACwich system using Cre/lox site-specific recombination Sangdun Choi, Dilara Begum, Heather Koshinsky, David W. Ow, and Rod A. Wing PMCID: PMC102802 RNA-binding analyses of HuC and HuD with the VEGF and c-myc 3′-untranslated regions using a novel ELISA-based assay Peter H. King PMCID: PMC102803 Signal amplification through nucleotide extension and excision on a dendritic DNA platform Stephen Capaldi, Robert C. Getts, and Sumedha D. Jayasena PMCID: PMC102804 Octamer-primed sequencing technology: development of primer identification software Gangwu Mei and Susan H. Hardin PMCID: PMC102805 Locus-specific contig assembly in highly-duplicated genomes, using the BAC-RF method Yann-rong Lin, Xavier Draye, Xiaoyin Qian, Shuzin Ren, Ling-hua Zhu, Jeff Tomkins, Rod A. Wing, Zhikang Li, and Andrew H. Paterson PMCID: PMC102806 Phage display of ScFv peptides recognizing the thymidine(6–4)thymidine photoproduct Anamaria G. Zavala, Thaddeus Lancaster, John D. Groopman, Paul T. Strickland, and Srinivasan Chandrasegaran PMCID: PMC102807 Use of terminal transferase-dependent antisense RNA amplification to determine the transcription start site of the Snrpn gene in individual neurons Victoria L. Buettner, Jeanne M. LeBon, Chunguang Gao, Arthur D. Riggs, and Judith Singer-Sam PMCID: PMC102808 Signal-exon trap: a novel method for the identification of signal sequences from genomic DNA Miklós Péterfy, Tibor Gyuris, and László Takács PMCID: PMC102809 Identification of differentially expressed genes from limited amounts of RNA Irene Bosch, Heather Melichar, and Arthur B. Pardee PMCID: PMC102810 |
