Roger P Wise
Corn Insects and Crop Genetics Research
Research Geneticist (Plants)
Phone: (515) 294-9756
Fax: (515) 294-9420
Room 411 BESSEY HALL
IOWA STATE UNIVERSITY AMES, IA, 50011-1020
Potokina, E., Druka, A., Luo, Z., Moscou, M., Wise, R.P., Waugh, R., Kearsey, M. 2008. Tissue Dependent Limited Pleiotropy Affects Gene Expression in Barley. Plant Journal. 55:DOI: 10.1111/j.1365-313X.2008.03601.x. Available: http://www3.interscience.wiley.com/cgi-bin/fulltext/120696653/HTMLSTART.
Hu, P., Wise, R.P. 2008. Diversification of Lrk/Tak Kinase Gene Clusters is Associated with Subfunctionalization and Cultivar-specific Transcript Accumulation in Barley. Functional and Integrative Genomics. Available: http://www.springerlink.com/content/cn67678u46506857/fulltext.html.
Cannon, E.K., Dash, S., Lu, H., Nadkarni, D., Thomas, A., Lauter, N.C., Brendel, V., Wise, R.P., Dickerson, J.A. 2007. PLEXdb: Plant and Pathogen Expression Database and Tools for Comparative and Functional Genomics Analysis [abstract]. Annual International Plant & Animal Genome Conference. Abstract Book. p. 351.
Potokina, E., Druka, A., Luo, Z.W., Wise, R.P., Waugh, R., Kearsey, M.J. 2008. Gene Expression Quantitative Trait Locus Analysis of 16,000 Barley Genes Reveals a Complex Pattern of Genome-wide Transcriptional Regulation. Plant Journal. 53(1):90-101.
Luo, Z.W., Potokina, E., Druka, A., Wise, R.P., Waugh, R., Kearsey, M.J. 2007. SFP genotyping from Affymetrix arrays is robust but largely detects cis-acting expression regulators. Genetics. 176:789-800.
Rossi, C., Cuesta-Marcos, A., Vales, I., Gomez-Pando, L., Orjeda, G., Wise, R.P., Sato, K., Hori, K., Capettini, F., Vivar, H., Chen, X., Hayes, P. 2006. Mapping multiple disease resistance genes using a barley mapping population evaluated in Peru, Mexico, and the USA. Molecular Breeding. 18(4):355-366.
Rossi, C., Cuesta-Marcos, A., Vales, I., Gomez-Pando, L., Orjeda, G., Wise, R.P., Sato, K., Hori, K., Capettini, F., Vivar, H., Chen, X., Hayes, P. 2006. Mapping multiple disease resistance genes using a barley mapping population evaluated in Peru, Mexico, and the USA. Molecular Breeding 18:355-366.
Kirst, M., Caldo, R., Casati, P., Tanimoto, G., Walbot, V., Wise, R.P., Buckler Iv, E.S. 2006. Contribution of genetic diversity to type 1 errors in short-oligonucleotide microarray analysis. Plant Biotechnology Journal. 4:489-498.
Nettleton, D., Hwang, G., Caldo, R.A., Wise, R.P. 2006. Estimating the number of true null hypotheses from a histogram of p-values. Journal of Agricultural, Biological, and Environmental Statistics. 11:337-356.
Druka, A., Muehlbauer, G., Druka, I., Caldo, R., Baumann, U., Rostoks, N., Schreiber, A., Wise, R.P., Close, T., Kleinhofs, A. 2006. An atlas of gene expression from seed to seed through barley development. Functional and Integrative Genomics. 6(3):202-211.
Caldo, R.A., Nettleton, D., Wise, R.P. 2006. Interplay of gene-specific disease resistance, basal defense, and the suppression of host responses to barley powdery mildew. In: Sanchez, F., Quinto, C., Lopez-Lara, I., Geiger, O., editors. Biology of Plant Microbe Interactions. St. Paul, MN: International Society of Molecular Plant-Microbe Interactions. Vol. 5, p. 620-624.
Caldo, R.A., Nettleton, D., Wise, R.P. 2005. Interplay of gene-specific disease resistance, basal defense, and the suppression of host-responses. 2005 Society for In Vitro Biology Proceedings. PS1.
Halterman, D.A., Wise, R.P. 2005. Multiple Upstream Open Reading Frames Of The Barley Mla13 Powdery Mildew Resistance Gene Collectively Down-Regulate Translation. XIII Plant and Animal Genome Conference Proceedings. p. P729.
Caldo, R.A., Nettleton, D., Wise, R.P. 2005. Induction of basal defense differentiates rapid and delayed host-specific barley resistance to powdery mildew. Plant and Animal Genome XIII Conference Proceedings. P665.
Williams, A., Caldo, R., Hanna, D., McLean, L., Tanimoto, G., Wise, R.P. 2005. Affymetrix maize pilot expression array. Plant and Animal Genome XIII Conference Proceedings. P897.
Shen, L., Gong, J., Caldo, R.A., Nettleton, D., Cook, D., Wise, R.P., Dickerson, J.A. 2005. BarleyBase - Putting large-scale plant expression profiling data into a functional genomics context. Plant and Animal Genome XIII Conference Proceedings. P878.
Wise, R.P., Caldo, R.A., Nettleton, D.S., Dickerson, J.A. 2004. Probe-level analysis of gene-for-gene-specified responses in barley-powdery mildew interactions. Plant and Animal Genome Conference Proceedings. XII Conference. p. W264.
Wise, R.P., Caldo, R.A., Nettleton, D.A. 2004. Parallel expression profiling of gene-for-gene-specified responses in barley-powdery mildew interactions.Plant and Animal Genome XII Conference. p. W33.
Halterman, D.A., Wise, R.P. 2004. A single amino acid substitution in the sixth leucine-rich repeat of barley Mla6 and Mla13 alleviates dependence on Rar1 for disease resistance signaling. Plant and Animal Genome Conference Proceedings. XII Conference. p. 858.
Hu, P., Wise, R.P. 2004. Physical mapping of new Lrk and Tak receptor-like kinase gene clusters in barley. Plant and Animal Genome Conference Proceedings. XII Conference. p. 857.
Kronmiller, B., Gobelman Werner, K.S., Wise, R.P. 2004. Comparative analysis of a one-megabase sequence spanning the maize Rf1 fertility restorer with the rice genome. 46th Maize Genetics Conference. p. 112.
Kronmiller, B., Gobelman Werner, K.S., Wise, R.P. 2004. Comparative analysis of a one-megabase sequence spanning the maize rf1 fertility restorer with the rice genome. Proceedings of Keystone Symposia "Comparative Genomics of Plants." p. 117.
Caldo, R.A., Nettleton, D., Wise, R.P. 2004. Interplay of non-specific and specific modulation patterns of barley transcriptional responses during powdery mildew infection. Plant and Animal Genome Conference Proceedings. XII Conference. p. 793.
Druka, A., Muehlbauer, G., Caldo, R., Wise, R.P., Close, T., Kleinhofs, A., Graner, A., Schulman, A., Langridge, P., Sato, K., Hayes, P., Marshall, D., Waugh, R. 2004. Parallel gene expression analysis in cereal development. Plant and Animal Genome XII Conference. p. 783.
Tang, X., Gong, J., Xin, J., Lishuang, S., Turner, S., Caldo, R., Nettleton, D., Wise, R.P., Dickerson, J. 2004. BarleyBase - An expression profiling database for cereal genomics. Plant and Animal Genome XII Conference. p. 944.
Halterman, D.A., Wise, R.P. 2004. A single amino acid substitution in the sixth leucine-rich repeat of barley MLA6 and MLA13 alleviates dependence on RAR1 for disease resistance signaling. Plant Journal. 38:215-226.
Close, T., Wanamaker, S., Caldo, R., Turner, S., Ashlock, D., Dickerson, J., Wing, R., Muehlbauer, G., Kleinhofs, A., Wise, R.P. 2004. A new resource for cereal genomics: 22k barley genechip comes of age. Plant Physiology. 134:960-968.
HALTERMAN, D.A., WISE, R.P. A SINGLE AMINO ACID SUBSTITUTION IN THE SIXTH LEUCINE-RICH REPEAT OF BARLEY MLA ALLEVIATES DEPENDENCE ON RAR1 FOR DISEASE RESISTANCE SIGNALING. AVAILABLE FROM: http://www.apsnet.org/meetings/2003/abstracts/a03ma232.htm. AMERICAN PHYTOPATHOLOGICAL SOCIETY ANNUAL MEETING. 2003. Phytopathology 93:S32 Publication no. P-2003-0232-AMA.
HALTERMAN, D.A., WISE, R.P. A SINGLE AMINO ACID SUBSTITUTION IN THE SIXTH LEUCINE-RICH REPEAT OF BARLEY MLA ALLEVIATES DEPENDENCE ON RAR1 FOR DISEASE RESISTANCE SIGNALING. AVAILABLE FROM: http://abstracts.aspb.org/pb2003/public/P49/1386.html. AMERICAN SOCIETY OF PLANT BIOLOGISTS ANNUAL MEETING. 2003. Poster 821 Session 49; Plant Pathogen/Symbiont Interactions.
CALDO, R., NETTLETON, D., TURNER, S., ASHLOCK, D., DICKERSON, J., WISE, R.P. COMPREHENSIVE TRANSCRIPTIONAL PROFILING OF BARLEY-POWDERY MILDEW INTERACTIONS USING AFFYMETRIX GENECHIPS. AVAILABLE FROM:
http://www.keystonesymposia.org/Meetings/ViewMeetings.cfm?MeetingID=658. KEYSTONE SYMPOSIA. 2003.
HALTERMAN, D.A., WISE, R.P. MLA RESISTANCE SPECIFICITIES ARE NOT LINEAR DESCENDANTS OF A COMMON ANCESTOR, BUT EVOLVED SEPARATELY SUBSEQUENT TO GENE DUPLICATION. AVAILABLE FROM: http://www.intl-pag.org/11/abstracts/P7b_P828_XI.html. PLANT AND ANIMAL GENOME CONFERENCE PROCEEDINGS. 2003. ABSTRACT NO. P828.
Wise, R.P., Caldo, R.A., Turner, S., Ashlock, D., Dickerson, J. 2003. Parallel expression analysis using barley microarrays. Plant and Animal Genome Conference Proceedings. XI Conference. p. W50.
Turner, S., Wise, R.P. 2003. Evolutionary organization of the Mla locus in the poaceae. Plant and Animal Genome Conference Proceedings. XI Conference. p. 351.
Hu, P., Wise, R.P. 2003. Genome-wide physical mapping of pathogen-response genes in barley. Plant and Animal Genome Conference Proceedings. XI Conference. p. 403.
Caldo, R.A., Wise, R.P. 2003. Elucidation of the incompatible and compatible barley-powdery mildew interactions using affymetrix genechips: a microarray representation of the quadratic check. Plant and Animal Genome Conference Proceedings. XI Conference. p. 758.
Wise, R.P., Pring, D.R. 2002. Nuclear-mediated mitochondrial gene regulation and male fertility in higher plants: light at the end of the tunnel? Proceedings of the National Academy of Sciences. 99:10240-10242.