Projects

INDUSTRIALLY ROBUST ENZYMES AND MICROORGANISMS FOR PRODUCTION OF SUGARS AND ETHANOL FROM AGRICULTURAL BIOMASS Appropriated (D)   Accession Number: 408893

Publications

Beta-D-xylosidase from Selenomonas ruminantium: thermodynamics of enzyme-catalyzed and noncatalyzed reactions - (Peer Reviewed Journal) - (05-Oct-08)

Aminoalcohols as probes of the two-subsite active site of Beta-D-xylosidase from Selenomonas ruminantium - (Peer Reviewed Journal) - (18-Sep-08)

Beta-D-xylosidase from Selenomonas ruminantium: thermodynamics of enzyme-catalyzed and noncatalyzed reactions - (Abstract) - (18-Jul-08)

Enzymes, Industrial - (Book/Chapter) - (30-May-08)

Beta-D-xylosidase from Selenomonas ruminantium: thermodynamics of enzyme-catalyzed and noncatalyzed reactions - (Abstract) - (07-May-08)

Beta-D-xylosidase from Selenomonas ruminantium: catalyzed reactions with natural substrates - (Abstract) - (07-May-08)

Biofuels group NSF DUSEL project - (Abstract)

Bang, S., Sani, R., Bleakly, B., Bischoff, K.M., Hughes, S.R., Wagschal, K.C., Wong, D., Lee, C.C., Jordan, D.B., Pokkuluri, R., Schiffer, M. 2008. Biofuels group NSF DUSEL project [abstract]. Homestake DUSEL Spring Workshop. Talk 10. p. 2.

Structure of the two-subsite beta-D-xylosidase from Selenomonas ruminantium in complex with 1,3-bis[tris(hydroxymethyl)methylamino]propane - (Peer Reviewed Journal)

Brunzelle, J.S., Jordan, D.B., McCaslin, D.R., Olczak, A., Wawrzak, Z. 2008. Structure of the two-subsite beta-D-xylosidase from Selenomonas ruminantium in complex with 1,3-bis[tris(hydroxymethyl)methylamino] propane. Archives Of Biochemistry and Biophysics. 474(1):157-166.

BETA-D-XYLOSIDASE FROM SELENOMONAS RUMINANTIUM: CATALYZED REACTIONS WITH NATURAL AND ARTIFICIAL SUBSTRATES - (Peer Reviewed Journal)

Jordan, D.B. 2008. Beta-D-xylosidase from Selenomonas ruminantium: catalyzed reactions with natural and artificial substrates. Applied Biochemistry and Biotechnology. 146:137-149.

STRUCTURE-FUNCTION RELATIONSHIPS OF A CATALYTICALLY-EFFICIENT BETA-D-XYLOSIDASE - (Abstract) - (03-Aug-07)

VARIATION IN RELATIVE SUBSTRATE SPECIFICTY OF BIFUNCTIONAL BETA-D-XYLOSIDASE/ALPHA-L-ARABINOFURANOSIDASE BY SINGLE-SITE MUTATIONS: ROLES OF SUBSTRATE DISTORTION AND RECOGNITION - (Peer Reviewed Journal)

Jordan, D.B., Li, X. 2007. Variation in relative substrate specificity of bifunctional beta-D-xylosidase/alpha-L-arabinofuranosidase by single-site mutations: roles of substrate distortion and recognition. Biochimica et Biophysica Acta. 1774(9):1192-1198.

INHIBITION OF THE TWO-SUBSITE BETA-D-XYLOSIDASE FROM SELENOMONAS RUMINANTIUM BY SUGARS: COMPETITIVE, NONCOMPETITIVE, DOUBLE BINDING, AND SLOW BINDING MODES - (Peer Reviewed Journal)

Jordan, D.B., Braker, J.D. 2007. Inhibition of the two-subsite beta-d-xylosidase from Selenomonas ruminantium by sugars: competitive, noncompetitive, double binding, and slow binding modes. Archives of Biochemistry and Biophysics. 465(1):231-246.

BETA-D-XYLOSIDASE FROM SELENOMONAS RUMINANTIUM: THERMODYNAMICS OF ENZYME-CATALYZED AND NONCATALYZED REACTIONS - (Abstract)

Jordan, D.B. 2007. Beta-D-xylosidase from Selenomonas ruminantium: thermodynamics of enzyme-catalyzed and noncatalyzed reactions [abstract]. Biotechnology for Fuels and Chemicals. p. 105.

BETA-D-XYLOSIDASE FROM SELENOMONAS RUMINANTIUM: CATALYZED REACTIONS WITH NATURAL AND ARTIFICIAL SUBSTRATES - (Abstract)

Jordan, D.B. 2007. Beta-D-xylosidase from Selenomonas ruminantium: catalyzed reactions with natural and artificial substrates [abstract]. Biotechnology for Fuels and Chemicals. p. 106.

STRUCTURE-FUNCTION RELATIONSHIPS OF A CATALYTICALLY EFFICIENT BETA-D-XYLOSIDASE - (Abstract)

Jordan, D.B. 2007. Structure-function relationships of a catalytically efficient beta-D-xylosidase [abstract]. American Chemical Society. Paper No. 175.

PRODUCTION OF HIGHLY ACTIVE LIGNOCELLULOSE-DEGRADING ENZYMES OF ANAEROBIC FUNGI BY INDUSTRIALLY RELEVANT FUNGI - (Abstract)

Li, X., Skory, C.D., Ximenes, E.A., Jordan, D.B., Dien, B.S., Hughes, S.R., Cotta, M.A. 2007. Production of highly active lignocellulose-degrading enzymes of anaerobic fungi by industrially relevant fungi [abstract].

EXPRESSION OF AN AT-RICH XYLANASE GENE FROM THE ANAEROBIC FUNGUS ORPINOMYCES SP. STRAIN PC-2 IN AND SECRETION OF THE HETEROLOGOUS ENZYME BY HYPOCREA JECORINA - (Peer Reviewed Journal)

Li, X., Skory, C.D., Ximenes, E.A., Jordan, D.B., Dien, B.S., Hughes, S.R., Cotta, M.A. 2007. Expression of an AT-rich xylanase gene from the anaerobic fungus Orpinomyces sp. strain PC-2 in and secretion of the heterologous enzyme by Hypocrea jecorina. Applied Microbiology and Biotechnology. 74:1264-1275.

FUNGICIDAL CARBOXAMIDES - (Other)

Basarab, G.S., Jordan, D.B., Lessen, T.A., Hansen, S.L. 2006. Fungicidal carboxamides. U.S. Patent 7,135,585.

BETA-D-XYLOSIDASE FROM SELENOMONAS RUMINANTIUM OF GLYCOSIDE HYDROLASE FAMILY 43 - (Peer Reviewed Journal)

Jordan, D.B., Li, X., Dunlap, C.A., Whitehead, T.R., Cotta, M.A. 2007. Beta-D-xylosidase from Selenomonas ruminantium of glycoside hydrolase family 43. Applied Biochemistry and Biotechnology. 136-140:93-104.

HEMICELLULASES FOR MEDIATING BIOMASS SACCHARIFICATION - (Abstract) - (13-Oct-06)

HEMICELLULASES FOR MEDIATING BIOMASS SACCHARIFICATION - (Proceedings/Symposium)

Jordan, D.B., Dien, B.S., Li, X., Cotta, M.A. 2006. Hemicellulases for mediating biomass saccharification. In: Proceedings of Renewable Energy 2006, October 9-13, 2006, Makuhari Messe, Chiba, Japan. p. 1036-1041.

BETA-D-XYLOSIDASE FROM SELENOMONAS RUMINANTIUM OF GLYCOSIDE HYDROLASE FAMILY 43 - (Abstract)

Jordan, D.B., Li, X., Dunlap, C.A., Whitehead, T.R., Cotta, M.A. 2006. Beta-D-xylosidase from Selenomonas ruminantium of glycoside hydrolase family 43 [abstract]. Gordon Research Conference. p. 3.

BETA-D-XYLOSIDASE FROM SELENOMONAS RUMINANTIUM OF GLYCOSIDE HYDROLASE FAMILY 43 - (Abstract)

Jordan, D.B., Li, X., Dunlap, C.A., Whitehead, T.R., Cotta, M.A. 2006. Beta-D-xylosidase from Selenomonas ruminantium of glycoside hydrolase family 43 [abstract]. Biotechnology for Fuels and Chemicals. p.93

CODON OPTIMIZATION OF AN A+T RICH XYLANASE GENE FROM THE ANAEROBIC FUNGUS ORPINOMYCES PC-2 FOR EXPRESSION BY TRICHODERMA REESEI - (Abstract)

Li, X., Jordan, D.B., Ximenes, E.A., Cotta, M.A., Dien, B.S., Hughes, S.R. 2006. Codon optimization of an A+T rich xylanase gene from the anaerobic fungus Orpinomyces PC-2 for expression by Trichoderma reesei [abstract]. In: Proceedings of the 9th International Workshop on Trichoderma and Gliocladium, April 6-8, 2006, Vienna, Austria. Paper No. T3.

ENZYMATIC SACCHARIFICATION OF HOT-WATER PRETREATED CORN FIBER FOR PRODUCTION OF MONOSACCHARIDES - (Peer Reviewed Journal)

Dien, B.S., Li, X., Iten, L.B., Jordan, D.B., Nichols, N.N., O Bryan, P.J., Cotta, M.A. 2006. Enzymatic saccharification of hot-water pretreated corn fiber for production of monosaccharides. Enzyme and Microbial Technology. 39:1137-1144.

HETEROLOGOUS PRODUCTION BY TRICHODERMA REESEI OF A XYLANASE OF THE ANAEROBIC FUNGUS ORPINOMYCES PC-2 - (Abstract) - (09-Nov-05)

PLASMID-BASED FUNCTIONAL PROTEOMIC ROBOTIC WORKCELL PROCESS FOR HIGH-THROUGHPUT SCREENING OF MULTIPLEXED LIBRARIES OF MUTAGENIZED CLONES - (Abstract)

Hughes, S.R., Riedmuller, S., Mertens, J.A., Li, X., Qureshi, N., Bischoff, K.M., Jordan, D.B., Cotta, M.A., Farrelly, P. 2005. Plasmid-based functional proteomic robotic workcell process for high-throughput screening of multiplexed libraries of mutagenized clones [abstract]. Optimization high-throughput Cultures for Bioprocessing 2005. p. 3.

ACTIVE-SITE MODELS OF RIBOFLAVIN SYNTHASE - (Proceedings/Symposium)

Jordan, D.B., Calabrese, J.C., Liao, D., Wawrzak, Z., Zheng, Y. 2005. Active-site models of riboflavin synthase. In: Nishino, T., Miura, R., Tanokura, M., Fukui, K., editors. Flavins and Flavoproteins 2005. Tokyo: ARchiTect, Inc. p. 737-742.

FUNCTIONAL PROTEOMIC WORKCELL FOR HIGH VOLUME PLASMID PREPARATIONS FOR REPEATED IN VITRO PROTEIN EXPRESSION AND HIGH THROUGHPUT SCREENING TO IDENTIFY MUTANT ENYZMES FOR USE AT LOW PH - (Abstract)

Hughes, S.R., Riedmuller, S.B., Mertens, J.A., Jordan, D.B., Li, X., Qureshi, N., Cotta, M.A., Farrelly, P.J., Bischoff, K.M. 2005. Functional proteomic workcell for high volume plasmid preparations for repeated in vitro protein expression and high throughput screening to identify mutant enyzmes for use at low pH [abstract]. Optimization High-throughput Cultures for Bioprocessing 2005. 13:3.

ENZYMATIC SACCHARIFICATION OF PRETREATED CORN FIBER FOR PRODUCTION OF SUGARS - (Abstract)

Dien, B.S., Li, X., Jordan, D.B., Nichols, N.N., Iten, L.B., Cotta, M.A. 2005. Enzymatic saccharification of pretreated corn fiber for production of sugars [abstract]. International Starch Technology. p. 90.

ACTIVE-SITE MODELS OF RIBOFLAVIN SYNTHASE - (Abstract)

Jordan, D.B., Calabrese, J.C. 2005. Active-site models of riboflavin synthase [abstract]. International Symposium on Flavins and Flavoproteins. p. 104.

SUBSTRATE SPECIFICITIES OF TWO GLYCOSIDE HYDROLASE FAMILY 11 XYLANASES - (Abstract)

Li, X., Jordan, D.B., Cotta, M.A. 2005. Substrate specificities of two glycoside hydrolase family 11 xylanases [abstract]. American Chemical Society. Paper No. 066.

ADVANCES ON ENZYMATIC SACCHARIFICATION OF LIGNOCELLULOSIC BIOMASS - (Abstract)

Li, X., Jordan, D.B., Dien, B.S., Cotta, M.A., Kane, P.M. 2004. Advances on enzymatic saccharification of lignocellulosic biomass [abstract]. Great Lakes Regional American Chemical Society. Paper No. 04-035.

CRYSTAL STRUCTURE OF PHENYLALANINE AMMONIA LYASE: MULTIPLE HELIX DIPOLES IMPLICATED IN CATALYSIS - (Peer Reviewed Journal)

Calabrese, J.C., Jordan, D.B., Boodhoo, A., Sariaslani, S., Vannelli, T. 2004. Crystal structure of phenylalanine ammonia lyase: multiple helix dipoles implicated in catalysis. Journal of Biochemistry. 43:11403-11416.