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Agricultural Research Service United States Department of Agriculture
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Research Project: Enhancing Genetic Merit of Dairy Cattle Through Genome Selection and Analysis

Location: Bovine Functional Genomics

Publications

Serial hepatic gene expression profiling in Angus steers during feed restriction and realimentation - (Other)
Connor, E.E., Kahl, S., Elsasser, T.H., Li, R.W., Barao, S.M. 2008. Serial hepatic gene expression profiling in Angus steers during feed restriction and realimentation. NIH Gene Expression Omnibus (GEO) Database. GSE12853.
A Whole-Genome Association Study of Major Determinants for Parasitic Infection in Angus Breed - (Abstract)
(20-Jun-08)
Genomic signatures of artificial selection in U.S. Holstein cows - (Abstract)
(20-Jun-08)
Characterization of a novel microdeletion polymorphism on BTA5 in cattle - (Peer Reviewed Journal)
(30-Apr-08)
Epigenetic Case Studies in Agricultural Animals - (Abstract)
(25-Apr-08)
analysis of Cattle Copy Number Variation Reveals Insights into the Evolution of Ruminants - (Abstract)
Liu, G., Keele, J.W., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2008. analysis of cattle copy number variation reveals insights into the evolution of ruminants. 2008 meeting on the Biology of Genomes, May 6-10, 2007, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY. p197.
Development and Applications of a Bovine 50,000 SNP Chip - (Abstract)
Taylor, J.F., Sonstegard, T.S., Van Tassell, C.P., Matukumalli, L., Smith, T.P., Allen, M.L. 2008. Development and Applications of a Bovine 50,000 SNP Chip. International Symposium of Animal Functional Genomics.
Applied Bovine Genomics: Chipping away at the genetics underlying disease traits. - (Abstract)
Sonstegard, T.S., Vanraden, P., Wiggans, G., Schnabel, S., Liu, G., Matukumalli, L.K., Silva, M.V., Mckay, S., Schroeder, S.G., Gasbarre, L.C., Taylor, J.F., Van Tassell, C.P. 2008. Applied Bovine Genomics: Chipping away at the genetics underlying disease traits.. International Symposium of Animal Functional Genomics.
SNPs to Chips: Changing the paradigm of mapping and selection in cattle - (Proceedings/Symposium)
Sonstegard, T.S., Liu, G., Matukumalli, L.K., Van Tassell, C.P. 2007. Snps to chips: changing the paradigm of mapping and selection in cattle. [abstracat].Animal Breeding and Animal Genetic Resources Proceedings.
Analysis of copy number variation in the bovine genome - (Abstract)
Liu, G., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Keele, J.W., Matukumalli, L.K., Brown, T., Smith, T.P., Gasbarre, L.C. 2008. Analysis of copy number variation in the bovine genome. Plant and Animal Genome (PAG) XVI Conference. San Diego, CA. p517.
A high-resolution map of copy number variation in the cattle genome - (Abstract)
Liu, G., Keele, J.W., Van Tassell, C.P., Sonstegard, T.S., Alexander, L.J., Li, R.W., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2008. A high-resolution map of copy number variation in the cattle genome. Plant and Animal Genome VX Conference Abstracts. The NRI Animal Genome PD Meeting, San Diego, CA. p84.
Characterization of the Cattle HapMap Population using the Illumina Bovine-50K SNP Chip - (Abstract)
Matukumalli, L.K., Schnabel, R.D., Lawley, C.T., Sonstegard, T.S., Smith, T.P., Moore, S.S., Taylor, J.F., Van Tassell, C.P. 2008. Characterization of the Cattle HapMap Population using the Illumina Bovine-50K SNP Chip. Plant and Animal Genome Conference.
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries - (Peer Reviewed Journal)
Van Tassell, C.P., Smith, T.P., Matukumalli, L.K., Taylor, J.F., Schnabel, R.D., Lawley, C.T., Haudenschild, C., Moore, S.S., Warren, W.C., Sonstegard, T.S. 2008. SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nature Methods. 5:247-252.
Detection of germline and somatic copy number variations in cattle - (Proceedings/Symposium)
Liu, G., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Keele, J.W., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2008. Detection of germline and somatic copy number variations in cattle. Developments in Biologicals. 132:231-237.

   

 
Project Team
Sonstegard, Tad
Liu, Ge
Van Tassell, Curtis - Curt
 
Project Annual Reports
  FY 2008
 
Publications
   Publications
 
Related National Programs
  Food Animal Production (101)
 
Related Projects
   Application of Bioinformatics to Livestock Genomes
   Bovine Copy Number Polymorphism and Its Implication in Early Embryonic Loss
   Functional Genomics and Proteonomics for Improved Cloning Efficiency
   Characterization of Structural Variations in Livestock Genomes
   Genome Signature of Artificial Selection and Genome-Wide Association Analysis in Holstein Cows
   Discovery of Genetic Variation That Enhances Genetic Improvement of Dairy Production and Health in Cattle and Buffalos
   Implementation of Whole Genome Selection in the U.S. Dairy and Beef Cattle Industries
 
 
Last Modified: 05/13/2009
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