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Gene Info

Gene Information For:Hs. PTCD1, Pentatricopeptide repeat domain 1
Sequence ID:NM_015545

Database Links

UniGeneEntrez GeneSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 98852297 - 98874306

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6645909Full LengthBC080580pentatricopeptide repeat domain 1
40011658Full LengthBC103495pentatricopeptide repeat domain 1
40011661Full LengthBC103502pentatricopeptide repeat domain 1
3356434IncompleteBC024042pentatricopeptide repeat domain 1
3453948IncompleteBC003688pentatricopeptide repeat domain 1
40011663IncompleteBC103661pentatricopeptide repeat domain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056360  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_015545 NP_056360 O75127 PPR

Related Sequences

 
mRNAGenPeptSwissProt
BC003688 AAH03688 O75127
BC080580 AAH80580 O75127
BC103495 AAI03496 Q3ZB84
BC103502 AAI03503 O75127
BC103661 AAI03662 Q3SYP6
AB014532 BAA31607 O75127
AK291004 BAF83693 A4D273
AK001615 BAG50949 B3KMD7
AK295912 BAG58700 B4DJ38

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTCD1 NP_056360 M.musculus Ptcd1 71799 Gene Info NP_598496 75
D.melanogaster CG4611 38601   NP_647949 35
A.gambiae AgaP_AGAP006051 1276723   XP_316101 34


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