Projects

DEVELOPMENT AND CHARACTERIZATION OF GENETIC RESOURCES FOR AGRONOMIC AND QUALITY TRAITS USING GENOMIC TOOLS Appropriated (D)   Accession Number: 413326

RESPONSE OF DIVERSE RICE GERMPLASM TO BIOTIC AND ABIOTIC STRESSES Appropriated (D)   Accession Number: 413322

DEVELOPMENT AND CHARACTERIZATION OF GENETIC RESOURCES FOR AGRONOMIC AND QUALITY TRAITS USING GENOMIC TOOLS Appropriated (D)   Accession Number: 413350

RESPONSE OF DIVERSE RICE GERMPLASM TO BIOTIC AND ABIOTIC STRESSES Appropriated (D)   Accession Number: 413193

IDENTIFICATION OF QTLS ASSOCIATED WITH SHEATH BLIGHT RESISTANCE GENES IN RICE Specific Cooperative Agreement (S)   Accession Number: 409905

EVALUATION OF RICE GERMPLASM FOR RESISTANCE TO COMMON DISEASES OF RICE FOUND IN THE SOUTHERN U.S. Specific Cooperative Agreement (S)   Accession Number: 411765

A COORDINATED RESEARCH, EDUCATION, AND EXTENSION PROJECT FOR THE APPLICATION OF GENOMIC DISCOVERIES TO IMPROVE RICE IN THE UNITED STATES Trust (T)   Accession Number: 409318

NEW KNOWLEDGE AND IMPROVED METHODS TO INCREASE BREEDERS' ABILITY TO DEVELOP RICE VARIETIES WITH ENHANCED FISSURE RESISTANCE Trust (T)   Accession Number: 411274

Publications

Early generation selection for resistance to rice kernel fissuring proves effective - (Abstract)

Pinson, S.R., Gibbons, J.W., Jia, Y. 2008. Early generation selection for resistance to rice kernel fissuring proves effective. [abstract] American Society of Agronomy Abstracts. p. 552-8.

Genetic mapping of sheath blight resistance to QTLs within tropical Japonica rice cultivars - (Peer Reviewed Journal) - (11-Jul-08)

Registration of TIL:455, TIL:514, and TIL:642, three rice germplasm lines containing introgressed sheath blight resistance alleles - (Peer Reviewed Journal)

Pinson, S.R., Oard, J.H., Groth, D., Miller, R., Jia, M.H., Jia, Y., Fjellstrom, R.G., Mackill, D., Li, Z. 2008. Registration of TIL:455, TIL:514, and TIL:642, three rice germplasm lines containing introgressed sheath blight resistance alleles. Journal of Plant Registrations. 2(3):251-254.

Waxy gene haplotypes: Associations with pasting properties in an international rice germplasm collection - (Peer Reviewed Journal)

Chen, M., Bergman, C.J., Pinson, S.R., Fjellstrom, R.G. 2008. Waxy gene haplotypes: Associations with pasting properties in an international rice germplasm collection. Journal of Cereal Science 48:781-788.

Using a set of TeQing-into-Lemont chromosome segment substitution lines for fine mapping QTL: Case studies on sheath blight resistance, spreading culm, and mesocotyl elongation - (Proceedings/Symposium)

Pinson, S.R., Wang, Y., Liu, G., Jia, M.H., Jia, Y., Sharma, A., Fjellstrom, R.G., Tabien, R.E. 2008. Using a set of TeQing-into-Lemont chromosome segment substitution lines for fine mapping QTL: Case studies on sheath blight resistance, spreading culm, and mesocotyl elongation. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.

Using TeQing-into-Lemont introgression lines (TILs) to dissect sheath blight resistance QTLs and fine-map a spreading culm gene - (Proceedings/Symposium) - (01-Feb-08)

Is ALL Rice Bran Created Equal? - (Proceedings/Symposium) - (01-Dec-07)

Resistance to rice grain fissuring: Improving breeding selection techniques and identifying physical, chemical, and genetic factors underlying fissure resistance - (Proceedings/Symposium)

Pinson, S.R., Osborn, G.S., Thomas, A.E., Mcclung, A.M. 2007. Resistance to rice grain fissuring: Improving breeding selection techniques and identifying physical, chemical, and genetic factors underlying fissure resistance. United States Japan Natural Resources Protein Panel 36:227-231.

A new rice gene-mapping population containing indica chromosomal segments introgressed into a tropical japonica background - (Abstract)

Pinson, S.R., Liu, G., Jia, Y., Jia, M.H., Fjellstrom, R.G., Sharma, A. 2007. A new rice gene-mapping populatin containing indica chromosomal segments introgressed into a tropical japonica background. [abstract] American Society of Agronomy Abstracts. p.277-6.

A new micro-chamber method for selecting sheath blight tolerant rice - (Experiment Station)

Pinson, S.R., Fjellstrom, R.G., Tabien, R.E., Mcclung, A.M., Wang, Y. 2007. A new micro-chamber method for selecting sheath blight tolerant rice. Experiment Station Bulletins. http://beaumont.tamu.edu/eLibrary/Newsletter/2007_Highlights_in_Research.pdf. pp.IX-XI.

Rice bran phytonutrients - (Experiment Station)

Chen, M.H., Bergman, C.J., Pinson, S.R. 2007. Rice bran phytonutrients. Experiment Station Bulletins.

Waxy gene haplotypes: Associations with amylose content and the effect by the environment in an international rice germplasm collection - (Peer Reviewed Journal)

Chen, M., Bergman, C.J., Pinson, S.R., Fjellstrom, R.G. 2008. Waxy gene haplotypes: Associations with amylose content and the effect by the environment in an international rice germplasm collection. Journal of Cereal Science. 47:536-545.

Rapid Determination of Rice Cultivar Responses to the Sheath Blight Pathogen Rhizoctonia solani Using a Micro-Chamber Screening Method - (Peer Reviewed Journal)

Jia, Y., Coarrea-Victoria, F., McClung, A.M., Zhu, L., Liu, G., Wamishe, Y., Xie, J., Marchetti, M.A., Pinson, S.R., Rutger, J.N., Correll, J.C. 2006. Rapid determination of rice cultivar responses to the sheath blight pathogen Rhizoctonia solani using a micro-chamber screening method. Plant Disease. 91:485-489.

New Breeding Parents Containing Novel QTL for Rice Sheath Blight Resistance Identified by Combining Phenotypic and Molecular Characterizations - (Proceedings/Symposium)

Pinson, S.R., Oard, J.H., Groth, D., Miller, R., Liu, G., Jia, Y., Jia, M.H., Fjellstrom, R.G. 2007. New Breeding Parents Containing Novel QTL for Rice Sheath Blight Resistance Identified by Combining Phenotypic and Molecular Characterizations. [abstract]. Plant and Animal Genome Conference XV, January 13-17, 2007, San Diego, CA. Available: http://intl-pag.org/15/abstracts.

Molecular characterization of a population of backcross introgression lines derived from crossing the US japonia rice cultivar Lemont as the recurrent parent withthe Chinese indica cultivar TeQing - (Proceedings/Symposium)

Liu, G., Jia, Y., Jia, M.H., Fjellstrom, R.G., Sharma, A., Li, Z., Pinson, S.R. 2007. Molecular characterization of a population of backcross introgression lines derived from crossing the US japonia rice cultivar Lemont as the recurrent parent withthe Chinese indica cultivar TeQing. Plant and Animal Genome Conference Proceedings.

PROTEOMIC AND GENETIC APPROACHES TO IDENTIFYING DEFENSE-RELATED PROTEINS IN RICE CHALLENGED WITH THE FUNGAL PATHOGEN RHIZOCTONIA SOLANI - (Peer Reviewed Journal)

Lee, J., Bricker, T.R., Lefevre, M., Pinson, S.R., Oard, J.H. 2006. Proteomic and genetic approaches to identifying defense-related proteins in rice challenged with the fungal pathogen Rhizoctonia solani. Molecular Plant Pathology 7(5):405-416.

INCORPORATING FOREIGN SHEATH BLIGHT RESISTANCE GENES INTO US RICE GEMPLASM - (Experiment Station)

Pinson, S.R., Fjellstrom, R.G., Shank, A.R., Oard, J., Groth, D., Jia, Y., Jia, M.H. 2006. Incorporating foreign sheath blight resistance genes into us rice gemplasm. Texas Rice, Highlighting Research 2006. pp.VI-VII.

SHEATH BLIGHT RESISTANCE IN SOUTHERN RICE - (Experiment Station)

Kepiro, J.L., Fjellstrom, R.G., McClung, A.M. 2006. Sheath blight resistance in Southern rice. Texas Rice. Highlighting Research in 2006. p. VIII.

RICE FUNCTIONALITY, STARCH STRUCTURE AND THE GENES - (Experiment Station)

Chen, M.H., Fjellstrom, R.G., Pinson, S.R., McClung, A.M., Bergman, C.J. 2006. Rice functionality, starch structure and the genes. Texas Rice, Highlighting Research in 2006. p. XII.

BRINGING QUANTITATIVE TRAITS UNDER BREEDER CONTROL BY COMBINING QTL MAPPING WITH CANDIDATE GENE APPROACHES: A CASE STUDY OF RICE SHEATH BLIGHT RESISTANCE - (Proceedings/Symposium)

Pinson, S.R., Jia, Y., Fjellstrom, R.G., Jia, M.H., Hulbert, S., Liu, K., Nelson, J.C. 2006. Bringing quantitative traits under breeder control by combining QTL mapping with candidate gene approaches: A case study of rice sheath blight resistance. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.

GENOTYPE AND ENVIRONMENT EFFECTS ON THE TOCTRIENOL, TOCOPHEROL, AND GAMMA-ORYZANOL FRACTIONS OF AN INTERNATIONAL RICE GERMPLASM COLLECTION - (Proceedings/Symposium)

Bergman, C.J., Pinson, S.R., Chen, M.H. 2006. Genotype and environment effects on the toctrienol, tocopherol, and gamma-oryzanol fractions of an international rice germplasm collection. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.

COMPLEMENTARY PROTEOMIC AND GENETIC ANALYSES OF RICE RESPONSE TO CHALLENGE BY THE FUNGAL PATHOGEN RHIZOCTONIA SOLANI - (Proceedings/Symposium)

Lee, J., Bricker, T.M., Lebevre, M., Pinson, S.R., Cooper, B., Oard, J.H. 2006. Complementary proteomic and genetic analyses of rice response to challenge by the fungal pathogen Rhizoctonia solani [abstract]. Plant and Animal Genome Conference Proceedings. p. P253.

MAPPING SHEATH BLIGHT RESISTANCE QTL(S) IN TROPICAL JAPONICA RICE - (Proceedings/Symposium)

Kepiro, J.L., Fjellstrom, R.G., Pinson, S.R., Shank, A.R., McClung, A.M., Tabien, R.E. 2006. Mapping sheath blight resistance QTL(s) in tropical japonica rice. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.

COMPLEMENTARY PROTEOMIC AND GENETIC ANALYSES OF RICE RESPONSE TO RICE CHALLENGE BY THE FUNGAL PATHOGEN RHIZOCTONIA SOLANI - (Proceedings/Symposium)

Lee, J., Bricker, T.M., Lefevre, M., Pinson, S.R., Cooper, B., Oard, J.H. 2006. Complementary proteomic and genetic analyses of rice response to rice challenge by the fungal pathogen Rhizoctonia solani. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.

MAPPING SHEATH BLIGHT RESISTANCE QTLS IN RICE - (Proceedings/Symposium)

Sharma, Arun, Kepiro, J.L., Fjellstrom, R.G., Pinson, S.R., Shank, A.R., McClung, A.M., Tabien, R. 2006. Mapping sheath blight resistance QTLs in rice [abstract]. Plant and Animal Genome Conference Proceedings. p. 162.

CORRELATION BETWEEN QTLS CONFERRING RESISTANCE TO FOUR DIFFERENT DISEASES WITH EACH OTHER AND WITH RGAS IDENTIFIES KEY REGIONS FOR FUTURE RESEARCH - (Proceedings/Symposium)

Pinson, S.R., Hulbert, S., Liu, K., Nelson, J.C. 2005. Correlation between QTLs conferring resistance to four different diseases with each other and with RGAs identifies key regions for future research [abstract]. 5th International Rice Genetics Symposium, Manila, Philippines. p. 95.

PUTTING SHEATH BLIGHT RESISTANCE GENES TO WORK IN THE RICE FIELD - (Experiment Station)

Pinson, S.R. 2005. Putting sheath blight resistance genes to work in the rice field. Texas Rice, Highlighting Research in 2005. pp. VIII-IX.

Nitrogen utilization efficiency: Relationships with grain yield, grain protein, and yield-related traits in rice - (Peer Reviewed Journal)

Samonte, S.O., Wilson, L.T., Pinson, S.R., McClung, A.M., Lales, J.S. 2006. Nitrogen utilization efficiency: Relationships with grain yield, grain protein, and yield-related traits in rice. Agronomy Journal. 98:168-176.

NITROGEN UTILIZATION EFFICIENCY: RELATIONSHIPS WITH GRAIN YIELD, GRAIN PROTEIN AND YIELD-RELATED TRAITS IN RICE - (Peer Reviewed Journal)

Samonte, S.B., Wilson, L.T., Medley, J., Pinson, S.R., McClung, A.M., Lales, J. 2006. Nitrogen utilization efficiency: relationships with grain yield, grain protein and yield-related traits in rice. Agronomy Journal 98:168-176.

EFFICIENT ANALYSIS OF MARKERS, GENES, AND QTLS USING A PERMANENT RICE GENE-MAPPING POPULATION - (Proceedings/Symposium)

Pinson, S.R., Li, Z., Tabien, R.E., Tai, T.H., Redus, M., Fjellstrom, R.G. 2004. Efficient analysis of markers, genes,and QTLs using a permanent rice gene-mapping population. Plant and Animal Genome Conference XIII. p. 141

THE LEMONT/TEQING RIL RICE POPULATION PROVIDES UNIQUE OPPORTUNITY FOR CORRELATING MOLECULAR DATA WITH PHENOMICS - (Proceedings/Symposium)

Pinson, S.R., Li, Z., Tabien, R.E., Tai, T., Redus, M.A., Fjellstrom, R.G. 2005. The Lemont/Teqing RIL rice population provides unique opportunity for correlating molecular data with phenomics. Proceedings, 2nd International Symposium, Rice Functional Genomics, Tucson, Arizona. p. 150.

CONFIRMING QTLS AND FINDING ADDITIONAL LOCI CONDITIONING SHEATH BLIGHT RESISTANCE IN RICE (ORYZA SATIVA L.) USING RECOMBINANT INBRED LINES - (Peer Reviewed Journal)

Pinson, S.R., Capdevielle, F.M., Oard, J.H. 2005. Confirming qtls and finding additional loci conditioning sheath blight resistance in rice (oryza sativa l.) using recombinant inbred lines. Crop Science 45:503-510.

DEVELOPMENT AND CHARACTERIZATION OF RICE MUTANT POPULATIONS FOR FUNCTIONAL GENOMICS OF HOST-PARASITE INTERACTIONS - (Abstract)

Jia, Y., Rutger, J.N., Wang, Z., Singh, P., Martin, R., Pinson, S.R. 2004. Development and characterization of rice mutant populations for functional genomics of host-parasite interactions. American Phytopathological Society Annual Meeting. Phytopathology. 94(6):47.

DEVELOPING RICE VARIETIES WITH IMPROVED FISSURE RESISTANCE: STEP 1. IDENTIFYING EFFECTIVE BREEDER SELECTION TECHNIQUES. - (Experiment Station)

Pinson, S.R., 2004. Developing rice varieties with improved fissure resistance: Step 1. identifying effective breeder selection techniques. Texas Rice. p. 7-8.

QTLS FOR PANICLE BLIGHT RESISTANCE AND THEIR ASSOCIATION WITH RESISTANCE TO OTHER DISEASES - (Proceedings/Symposium)

Pinson, S.R., Shahjahan, A.M., Rush, M.C. 2004. QTLs for panicle blight resistance and their association with resistance to other diseases. In: Rice Technical Working Group Meeting Proceedings, February 29-March 4, 2004, New Orleans, LA. 2004 CDROM.

IMPROVED METHODS FOR IDENTIFYING FISSURE RESISTANT RICE - (Proceedings/Symposium)

Pinson, S.R., Osborn, G.S. 2004. Improved methods for identifying fissure resistant rice. In: Rice Technical Working Group Meeting Proceedings, February 29-March 4, 2004, New Orleans, LA. 2004 CDROM.

PROGRESSING FROM PUTATIVE QTLS TO MARKER ASSISTED SELECTION IN BREEDING - (Proceedings/Symposium)

McClung, A.M., Pinson, S.R., Shank, A.R., Chen, M., Bergman, C.J., Fjellstrom, R.G. 2003. Progressing from putative QTLs to marker assisted selection in breeding [abstract]. Agronomy Abstracts. 2003 CDROM.

TRACKING AND TAMING RICE GENES: HOW RESEARCH GENETICISTS ASSIST PLANT BREEDERS - (Other)

PINSON, S.R. TRACKING AND TAMING RICE GENES: HOW RESEARCH GENETICISTS ASSIST PLANT BREEDERS. EXPERIMENT STATION BULLETINS. 2003. 3 pp.

USING A MOISTURE TRANSPORT MODEL FOR IDENITFYING THE GENES EXPRESSING FIELD FISSURE RESISTANCE IN RICE SEED - (Proceedings/Symposium)

WAGGONER, A.E., OSBORN, G.S., PINSON, S.R. USING A MOISTURE TRANSPORT MODEL FOR IDENITFYING THE GENES EXPRESSING FIELD FISSURE RESISTANCE IN RICE SEED. ASAE ANNUAL INTERNATIONAL MEETING. 2003.

DEVELOPMENT AND CHARACTERIZATION OF RICE MUTANT POPULATIONS FOR FUNCTIONAL GENOMICS OF HOST-PARASITE INTERACTIONS - (Abstract)

Jia, Y., Wang, Z., Singh, P., Rutger, J.N., Martin, R., Pinson, S.R. 2004. Development and characterization of rice mutant populations for functional genomics of host-parasite interactions [abstract]. 15th International Plant Protection Congress Proceedings. p. 64.

GENETIC DIVERSITY FOR LIPID CONTENT AND FATTY ACID PROFILE IN RICE BRAN - (Peer Reviewed Journal)

Goffman, F.D., Pinson, S.R., Bergman, C.J. 2003. Genetic diversity for lipid content and fatty acid profile in rice bran. Journal of Agricultural and Food Chemistry. 80(5):485-490.

LIPID CONTENT AND FATTY ACID PROFILE IN THE BRAN OF A RICE GERMPLASM COLLECTION - (Proceedings/Symposium)

GOFFMAN, F.D., PINSON, S.R., BERGMAN, C.J. LIPID CONTENT AND FATTY ACID PROFILE IN THE BRAN OF A RICE GERMPLASM COLLECTION. RICE TECHNICAL WORKING GROUP MEETING PROCEEDINGS. 2002. p. 53.

CONFIRMATION AND FURTHER MAPPING OF SHEATH BLIGHT RESISTANCE QTLS IN RICE USING INTERVAL ANAYLYIS, STEPWISE REGRESSION AND DISCRIMINANT ANALYSIS OF RIL DATA - (Proceedings/Symposium)

PINSON,S.R., OARD,J.H., CAPDEVIELLE,F.M., MARCHETTI,M.A., CONFIRMATION AND FURTHER MAPPING OF SHEATH BLIGHT RESISTANCE QTLS IN RICE USING INTERVAL ANAYLYIS, STEPWISE REGRESSION AND DISCRIMINANT ANALYSIS OF RIL DATA, PLANT AND ANIMAL GENOME CONFERENCE PROCEEDINGS, 2003. p. 158.

ENHANCING U.S. RICE CULTIVAR DEVELOPMENT WITH MOLECULAR MARKER TECHNOLOGY - (Proceedings/Symposium)

MCCLUNG, A.M., FJELLSTROM, R.G., BORMANS, C.A., BERGMAN, C.J., PINSON, S.R., SHANK, A.R., PARK, W.D. ENHANCING U.S. RICE CULTIVAR DEVELOPMENT WITH MOLECULAR MARKER TECHNOLOGY. PLANT AND ANIMAL GENOME CONFERENCE PROCEEDINGS. 2003. p. 55.