Projects

MODIFICATION OF SOYBEAN SEED COMPOSITION FOR FOOD, FEED, AND OTHER INDUSTRIAL USES Appropriated (D)   Accession Number: 409188

GENOMIC CHARACTERIZATION AND MANIPULATION OF VALUE-ADDED TRAITS FROM RYE FOR UTILIZATION IN WHEAT IMPROVEMENT Appropriated (D)   Accession Number: 413083

Publications

An ALMT1 gene cluster controlling aluminium (aluminum) tolerance at the Alt4 locus of rye (Secale cereale L.) - (Peer Reviewed Journal)

Collins, N., Shirley, N.J., Saeed, M., Pallotta, M., Gustafson, J.P. 2008. An ALMT1 gene cluster controlling aluminium (aluminum) tolerance at the Alt4 locus of rye (Secale cereale L.). Genetics. 179(1):669-682.

Polyploidization as a Retraction Force in Plant Genome Evolution: Sequence Rearrangements in Triticale - (Peer Reviewed Journal)

Benito, M., Pereira, H.S., Rocheta, M., Gustafson, J.P., Viegas, W., Silva, M. 2008. Polyploidization as a Retraction Force in Plant Genome Evolution: Sequence Rearrangements in Triticale. PLoS One. Available at: http//www.plosone.org/doi/pone.0001402.

Bioinformatics Analysis of Predicted S/Mars and Associated Stowaway Transposon Locations in the Gramineae - (Abstract)

Delongchamp, S.R., Blakey, A.C., Christoffers, M., Gustafson, J.P. 2008. Bioinformatics Analysis of Predicted S/Mars and Associated Stowaway Transposon Locations in the Gramineae [abstract]. Plant and Animal Genome Conference, January 2008, San Diego, California. Paper No. P267.

Molecular Characterization of Aluminium (aluminum) Tolerance in Rye - (Abstract)

Collins, N., Saeed, M., Shirley, N.J., Pallotta, M., Gustafson, J.P. 2008. Molecular Characterization of Aluminium (aluminum) Tolerance in Rye [abstract]. Plant and Animal Genome Conference, January 2008, San Diego, California. Paper No. W5.

Allopolyploidization Accommodated Genomic Sequence Changes in Triticale - (Peer Reviewed Journal)

Ma, X., Gustafson, J.P. 2008. Allopolyploidization Accommodated Genomic Sequence Changes in Triticale. Annals Of Botany. 101(6):825-832.

Genomics of Disease - (Other)

Gustafson, J.P., Taylor, J., Stacey, G. (Editors). 2008. Genomics of Disease, 24th Stadler Genetics Symposium. New York:Springer Science + Business Media, LLC. 221 p.

The Basis of Aluminum Tolerance Encoded by the Alt3 Locus of Rye - (Abstract)

Collins, N., Gustafson, J.P. 2007. The Basis of Aluminum Tolerance Encoded by the Alt3 Locus of Rye [abstract]. 2007 Genomics Symposium: The Genomics of Drought, October 2007, Adelaide, South Australia. Paper No. 6.

Genetic Diversity In Abiotic Stress Tolerances Among Wheat Species - (Abstract)

Bebeli, P.J., Gkouveri, K.D., Gustafson, K.A., Gustafson, J.P. 2007. Genetic Diversity In Abiotic Stress Tolerances Among Wheat Species [abstract]. Workshop on Varietal Characteristics of Cereals in Different Growing Systems with Special Emphasis on Below Ground Traits, May 29-June 1, 2007, Valence, Hungary. p. 123.

Improving the Potential for Increased World Food Production - (Popular Publication) - (15-Mar-07)

The prospects for manipulation of rye genes for wheat improvement - (Abstract)

Gustafson, J.P., Shi, B., Borlaug, N.E., Collins, N., Jacobs, A., Button, J., Zhou, H., Gustafson, N., Chand, J., Musket, T., Langridge, P. 2007. The prospects for manipulation of rye genes for wheat improvement [abstract]. Plant and Animal Genome Conference, January 2007, San Diego, California. Paper No. W230.

Map based cloning of cereal abiotic stress tolerance genes at the Australian Centre for Plant Functional Genomics - (Abstract) - (01-Jul-06)

CONSTRUCTION OF A RYE CV. BLANCO BAC LIBRARY, AND PROGRESS TOWARDS CLONING THE RYE ALT3 ALUMINUM TOLERANCE GENE - (Abstract)

Shi, B., Miftahudin, Collins, N.C., Langridge, P., Gustafson, J.P. 2007. Construction of a rye cv. blanco BAC library, and progress towards cloning the rye Alt3 aluminum tolerance gene. Vortr. Pflanzenzuchtg. 71:205-209.

STRUCTURAL AND FUNCTIONAL ANALYSES OF THE WHEAT GENOMES BASED ON EXPRESSED SEQUENCE TAGS (ESTS) RELATED TO ABIOTIC STRESSES - (Peer Reviewed Journal)

Ramalingam, J., Pathan, M.S., Feril, O., Miftahudin, Ross, K., Ma, X., Mahmoud, A.A., Layton, J., Rodriguez-Milla, M.A., Chikmawati, T., Valliyodan, B., Skinner, R., Matthews, D.E., Gustafson, J.P., Nguyen, H.T. 2006. Structural and functional analyses of the wheat genomes based on expressed sequence tags (ests) related to abiotic stresses. Genome. 49:1324-1340.

Timing and rate of genome variation in triticale following allopolyploidization - (Peer Reviewed Journal)

Ma, X., Gustafson, J.P. 2006. Timing and rate of genome variation in triticale following allopolyploidization. Genome. 49:950-958.

USE OF A LARGE-SCALE TRITICEAE EST RESOURCE TO REVEAL GENE EXPRESSION PROFILES IN HEXAPLOID WHEAT (TRITICUM AESTIVUM L.) - (Peer Reviewed Journal)

Chao, S., Lazo, G.R., You, F., Crossman, C.C., Hummel, D.D., Lui, N., Laudencia-Chingcuanco, D., Anderson, J.A., Close, T.J., Dubcovsky, J., Gill, B.S., Gill, K.S., Gustafson, J.P., Kianian, S.F., Lapitan, N.L.V., Nguyen, H.T., Sorrells, M.E., McGuire, P.E., Qualset, C.O., Anderson, O.D. 2006. Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.). Genome. 49:531-544 (2006).

GENOME RESPONSES TO ALLOPOLYPLOIDIZATION - (Abstract)

Ma, X., Gustafson, J.P. 2005. Genome responses to allopolyploidization [abstract]. Proceedings of the ComBio 2005 Conference. p.60.

PHYLOGENETIC RELATIONSHIPS AMONG SECALE SPECIES REVEALED BY AMPLIFIED FRAGMENT LENGTH POLYMORPHISMS - (Peer Reviewed Journal)

Chikmawati, T., Skovmand, B., Gustafson, J.P. 2005. Phylogenetic relationships among secale species revealed by amplified fragment length polymorphisms. Genome. 48(5):792-801.

TARGETING AN ALUMINUM TOLERANCE GENE REGION IN RYE USING RICE/RYE MICRO-COLINEARITY - (Proceedings/Symposium)

Miftahudin, Rodriguez-Milla, M.A., Ross, K., Scoles, G.J., Gustafson, J.P. 2005. Targeting an aluminum tolerance gene region in rye using rice/rye micro-colinearity [abstract]. In: Proceedings In the Wake of the Double Helix: From the Green revolution to the Gene Revolution, Bologna, Italy. p.207-215.

SECALE - (Book/Chapter)

Chikmawati, T., Ma, X., Ross, K., Miftahudin, Gustafson, J.P. 2006. Secale. In: Kole, C., editor. Cereals and Millets. Verlag Berlin Heidelberg, Germany:Springer. p. 400-419.

TARGETING THE ALUMINUM TOLERANCE GENE ALT3 REGION IN RYE USING RICE/RYE MICROCOLINEARITY - (Peer Reviewed Journal)

Miftahudin, Chikmawati, T., Ross, K., Scoles, G.J., Gustafson, J.P. 2005. Targeting the aluminum tolerance gene alt3 region in rye using rice/rye microcolinearity. Theoretical and Applied Genetics. 110(5):906-913.

GENOMIC RESOURCES: MOVING WHEAT INTO THE MAINSTREAM IN PLANT GENOMICS - (Peer Reviewed Journal)

Gustafson, J.P., Mcguire, P.E., Qualset, C.O. 2004. Genomic resources: moving wheat into the mainstream in plant genomics. Genetics. 168:583-584.

GENOME EXPLOITATION: DATA MINING THE GENOME - (Other)

Gustafson, J.P., Shoemaker, R.C., Snape, J.W. 2005. Genome exploitation: data mining the genome. 23rd Stadler Genetics Symposium. Springer Publishing. 252 p.

CHROMOSOME BIN MAP OF EXPRESSED SEQUENCE TAGS IN HOMOEOLOGOUS GROUP 1 OF HEXAPLOID WHEAT AND HOMOEOLOGY WITH RICE AND ARABIDOPSIS - (Peer Reviewed Journal)

Peng, J., Zadeh, H., Lazo, G.R., Gustafson, J.P., Chao, S., Anderson, O.D., Qi, L.L., Echalier, B., Gill, B.S., Dilbirligi, M., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K., Kianian, S.F., Mahmoud, A., Miftahudin, Wennerlind, E., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Lapitan, N.V. 2004. Chromosome bin map of expressed sequence tags in homoeologous group 1 of hexaploid wheat and homoeology with rice and arabidopsis. Genetics. 168:609-623.

DELETION MAPPING OF HOMOEOLOGOUS GROUP 6-SPECIFIC WHEAT ESTS - (Peer Reviewed Journal)

Randhawa, H.S., Dilbirligi, M., Sidhu, D., Erayman, M., Sandhu, D., Bondareva, S., Chao, S., Lazo, G.R., Anderson, O.D., Miftahudin, Gustafson, J.P., Echalier, B., Qi, L.L., Gill, B.S., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Bermudez-Kandianis, C.E., Greene, R.A., Sorrells, M.E., Wennerlind, E., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K.S., Kianian, S.F., Pathan, M.S., Nguyen, H.T., Endo, T.R., Close, T.J., Mcguire, P., Qualset, C.O., Gill, K.S. 2004. Deletion mapping of homoeologous group 6-specific wheat ests. Genetics. 168:677-686.

GROUP 3 CHROMOSOME BIN MAPS OF WHEAT AND THEIR RELATIONSHIP TO RICE CHROMOSOME 1 - (Peer Reviewed Journal)

Munkvold, J.D., Greene, R.A., Bermudez-Kandianis, C.E., La Rota, C.M., Edwards, H., Sorrells, S.F., Dake, T., Benscher, D., Kantety, R., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Pathan, M.S., Nguyen, H.T., Matthews, D.E., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Anderson, J.A., Gonzalez-Hernandez, J.L., Peng, J., Lapitan, N.V., Qi, L.L., Echalier, B., Gill, B.S., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sandhu, D., Eryman, M., Gill, K.S., Mcguire, P.E., Qualset, C.O., Sorrells, M.E. 2004. Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1. Genetics. 168:639-650.

A 2500-LOCUS BIN MAP OF WHEAT HOMOEOLOGOUS GROUP 5 PROVIDES INSIGHTS ON GENE DISTRIBUTION AND COLINEARITY WITH RICE - (Peer Reviewed Journal)

Linkiewicz, A.M., Qi, L.L., Gill, B.S., Echalier, B., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Akhunov, E.D., Dvorak, J., Pathan, M.S., Nguyen, H.T., Peng, J., Lapitan, N.V., Miftahudin, Gustafson, J.P., La Rota, C.M., Sorrells, M.E., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Wennerlind, E., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Dubcovsky, J. 2004. A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice. Genetics. 168:665-676.

DEVELOPMENT OF AN EXPRESSED SEQUENCE TAG (EST) RESOURCE FOR WHEAT (TRITICUM AESTIVUM L.): EST GENERATION, UNIGENE ANALYSIS, PROBE SELECTION, AND BIOINFORMATICS FOR A 16,000-LOCUS BIN-DELINEATED MAP - (Peer Reviewed Journal)

Lazo, G.R., Chao, S., Hummel, D.H., Edwards, H., Crossman, C.C., Lui, N., Matthews, D.E., Carollo, V.L., Hane, D., You, F.M., Butler, E., Miller, R., Close, T.J., Peng, J., Lapitan, N.V., Gustafson, J.P., Qi, L.L., Echalier, B., Gill, B.S., Dilbirligi, M., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K.G., Kianian, S.F., Mahmoud, A., Miftahudin, Ma, X., Wennerlind, E.J., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Anderson, O.D. 2004. Development of an expressed sequence tag (est) resource for wheat (triticum aestivum l.): est generation, unigene analysis, probe selection, and bioinformatics for a 16,000-locus bin-delineated map. Genetics. 168:585-593.

A 2600-LOCUS CHROMOSOME BIN MAP OF WHEAT HOMOEOLOGOUS GROUP 2 REVEALS INTERSTITIAL GENE-RICH ISLANDS AND COLINEARITY WITH RICE - (Peer Reviewed Journal)

Wennerlind, E., Nduati, V., Gonzalez-Hernandez, J.L., Mesfin, A., Trudeau-Spanjers, M., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Qi, L.L., Gill, B.S., Echalier, B., Linkiewicz, A.M., Akhunov, E.D., Dubcovsky, J., Peng, J., Lapitan, N.V., Zhang, D., Nguyen, H.T., Miftahudin, Gustafson, J.P., Greene, R.A., Sorrells, M.E., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sidhu, D., Dilbirligi, M., Gill, K.S., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Anderson, J.A. 2004. A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice. Genetics. 168:625-637.

A CHROMOSOME BIN MAP OF 2148 EST LOCI OF WHEAT HOMOEOLOGOUS GROUP 7 - (Peer Reviewed Journal)

Hossain, K.G., Kalavacharla, V., Lazo, G.R., Hegstad, J., Wentz, M.J., Simons, K., Gehlhar, S., Rust, J.L., Syamala, R.R., Obeori, K., Suresh, B., Karunadharma, P., Chao, S., Anderson, O.D., Qi, L.L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Sidhu, D., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N.V., Bermudez-Kandianis, C.E., Sorrells, M.E., Feril, O., Pathan, M.S., Nguyen, H.T., Gonzalez-Hernandez, J.L., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Kianian, S.F. 2004. A chromosome bin map of 2148 est loci of wheat homoeologous group 7. Genetics. 168:687-699.

A CHROMOSOME BIN MAP OF 16,000 EST LOCI AND DISTRIBUTION OF GENES AMONG THE THREE GENOMES OF POLYPLOID WHEAT - (Peer Reviewed Journal)

Qi, L.L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Ratnasiri, A., Dubcovsky, J., Bermudez-Kandianis, C.E., Greene, R.A., Kantety, R., La Rota, M., Munkvold, J.D., Sorrells, S.F., Sorrells, M.E., Dilbirligi, M., Sidhu, D., Eryman, M., Randhawa, H.S., Sandhu, D., Bondareva, S., Gill, K.S., Mahmoud, A., Ma, X., Miftahudin, Gustafson, J.P., Wennerlind, E.J., Nduati, V., Gonzalez-Hernandez, J.L., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Pathan, M.S., Zhang, D., Nguyen, H.T., Choi, D.W., Close, T.J., Mcguire, P.E., Qualset, C.O., Gill, B.S. 2004. A chromosome bin map of 16,000 est loci and distribution of genes among the three genomes of polyploid wheat. Genetics. 168:701-712.

CONSTRUCTION AND EVALUATION OF CDNA LIBRARIES FOR LARGE SCALE EST SEQUENCING IN WHEAT (TRITICUM AESTIVUM L.) - (Peer Reviewed Journal)

Zhang, D., Choi, D.W., Wanamaker, S., Fenton, R.D., Chin, A., Malatrasi, M., Turuspekov, Y., Walia, H., Akhunov, E., Kianian, P., Otto, C., Simons, K., Deal, K., Echenique, V., Stamova, B., Ross, K., Butler, E., Doherty, L., Verhey, S.D., Johnson, R., Altenbach, S.B., Kothari, K.M., Tanaka, C.K., Shah, M.M., Chingcuanco, D.L., Gitt, M.A., Pham, J., Han, P., Miller, R.E., Crossman, C.C., Chao, S., Lazo, G.R., Klueva, N., Gustafson, J.P., Kianian, S.F., Dubcovsky, J., Walker-Simmons, M.K., Gill, K.S., Dvorak, J., Anderson, O.D., Mcguire, P., Qualset, C.O., Nguyen, H.T., Close, T.J. 2004. Construction and evaluation of cdna libraries for large scale est sequencing in wheat (triticum aestivum l.). Genetics. 168:595-608.

ANALYSIS OF EST LOCI ON WHEAT CHROMOSOME GROUP 4 - (Peer Reviewed Journal)

Miftahudin, Ross, K., Ma, X., Mahmoud, A., Layton, J., Rodriguez, M., Chikmawati, T., Ramalingam, J., Feril, O., Pathan, M.S., Surlan-Momirovic, G., Kim, S., Chema, K., Fang, P., Haule, L., Struxness, H., Birkes, J., Yaghoubian, C., Kinner, R.S., Nguyen, V., Qi, L.L., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N.V., Bermudez-Kandianis, C.E., Sorrells, M.E., Hossain, K.G., Kalavacharla, V., Kianian, S.F., Lazo, G.R., Chao, S., Anderson, O.D., Gill, B.S., Gonzalez, J., Wennerlind, E., Anderson, J.A., Choi, D.W., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Nguyen, H.T., Gustafson, J.P. 2004. Analysis of est loci on wheat chromosome group 4. Genetics. 168:651-663.

POLYPLOIDIZATION-INDUCED GENOME VARIATION IN TRITICALE - (Peer Reviewed Journal)

Ma, Z., Fang, P., Gustafson, J.P. 2004. Polyploidization-induced genome variation in triticale. Genome. 47:839-848.

GENOME EVOLUTION OF POLYPLOIDS: A PROCESS OF CYTOLOGICAL AND GENETIC DIPLOIDIZATION - (Review Article) - (11-Mar-04)

MICRO-COLINEARITY BETWEEN RYE AND RICE ON THE ALUMINUM TOLERANCE GENE REGION - (Abstract)

Miftahudin, Chikmawati, T., Gustafson, J.P. 2004. Micro-colinearity between rye and rice on the aluminum tolerance gene region [abstract]. Plant and Animal Genome. p. 84.

A 2100 EST LOCI MAP OF GROUP 7 CHROMOSOMES OF WHEAT (TRITICUM AESTIVUM L.) - (Abstract)

Hossain, K.G., Kalavacharla, V., Lazo, G.R., Hegstad, J., Wentz, M.J., Simons, K., Gehlhar, S., Syamala, R.R., Obeori, K., Suresh, B., Karunadharma, P., Chao, S., Anderson, O.D., Qi, L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N., Drake, T., Sorrells, M.E., Feril, O., Pathan, M.S., Nguyen, H.T., Gonzalez, J., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Kianian, S.F. 2004. A 2100 est loci map of group 7 chromosomes of wheat (triticum aestivum l.)[abstract]. XII Plant and Animal Genome Conference. p. 409.

GENOME EVOLUTION IN TRITICALE - (Abstract)

Ma, X., Gustafson, J.P. 2004. Genome evolution in triticale [abstract]. Plant and Animal Genome. p. 485.

PHYSICAL BIN MAP OF EST ON WHEAT HOMOEOLOGOUS GROUP 4 CHROMOSOMES - (Abstract)

Miftahudin, Ross, K., Ma, X., Mahmoud, A., Layton, J., Rodriguez, M., Chikmawati, T., Ramalingam, J., Feril, O., Pathan, M.S., Momorovic, G.S., Nguyen, H.T., Hossain, K.G., Kalavacharla, V., Kianian, S.F., Lazo, G.R., Chao, S., Anderson, O.D., Qi, L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N., Dake, T., Sorrells, M.E., Gonzalez, J., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Gustafson, J.P. 2004. Physical bin map of est on wheat homoeologous group 4 chromosomes [abstract]. XII Plant and Animal Genome Conference. p. 407.

RYE GENOME VARIATION IN WHEAT BACKGROUNDS - (Abstract)

Ma, X.F., Gustafson, J.P. 2003. Rye genome variation in wheat backgrounds [abstract]. Crop Science Society Of America. p. C-7261245.

AFLP-BASED GENETIC DIVERSITY AMONG CULTIVATED RYE GENOTYPES - (Abstract)

Chikmawati, T., Miftahudin, Gustafson, J.P. 2003. Aflp-based genetic diversity among cultivated rye genotypes [abstract]. American Society of Agronomy. p. C-8310001.

GLUTATHIONE PEROXIDASE GENES IN ARABIDOPSIS ARE UBIQUITOUS AND REGULATED BY ABIOTIC STRESSES THROUGH DIVERSE SIGNALING PATHWAYS - (Peer Reviewed Journal)

Rodriguez Milla, M.A., Maurer, A., Rodriguez Huete, A., Gustafson, J.P. 2003.Glutathione peroxidase genes in arabidopsis are ubiquitous and regulated by abiotic stresses through diverse signaling pathways. The Plant Cell. 36(5):602-615.

CHARACTERIZATION OF ALUMINUM TOXICITY AND TOLERANCE IN CEREALS - (Abstract)

Miftahudin, Rodriguez Milla, M.A., Ross, K., Gustafson, J.P. 2003. Characterization of aluminum toxicity and tolerance in cereals. In: Proceedings of Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 392-395.

GENOME VARIATION IN ALLOPOLYPLOID TRITICALE - (Abstract)

Ma, X., Gustafson, J.P. 2004. Genome variation in allopolyploid triticale [abstract]. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Board #1368.

DEVELOPMENT OF PCR-BASED CO-DOMINANT MARKERS FLANKING THE ALT3 GENE IN RYE - (Peer Reviewed Journal)

Miftahudin, Scoles, G.J., Gustafson, J.P. 2004. Development of pcr-based co-dominant markers flanking the alt3 gene in rye. Genome. 47:231-238.

SYNTENY PERTURBATIONS BETWEEN WHEAT HOMOEOLOGOUS CHROMOSOMES CAUSED BY LOCUS DUPLICATIONS AND DELETIONS CORRELATE WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS - (Peer Reviewed Journal)

Akhunov, E.D., Akhunov, A.R., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates along chromosome arms. Proceedings of the National Academy of Sciences. 100:10836-10841.

A BARLEY CONSENSUS MAP INTEGRATING SSR, RFLP, AND AFLP MARKERS - (Peer Reviewed Journal)

Karakousis, A., Gustafson, J.P., Chalmers, K.J., Barr, A.R., Langridge, P. 2003. A barley consensus map integrating SSR, RFLP, and AFLP markers. Australian Journal of Agricultural Research. 54(12):1173-1185.

A TWO-THOUSAND LOCI PHYSICAL MAP OF WHEAT HOMOEOLOGOUS GROUP 5 - (Abstract)

Linkiewicz, A.M., Qi, L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., La Rota, C.M., Sorrells, M.E., Hossain, K., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Zhang, D., Nguyen, H.T., Wennerlind, E., Peng, J., Lapitan, N., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Dubcovsky, J. 2003. A two-thousand loci physical map of wheat homoeologous group 5. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 986-988.

GC COMPOSITION AND CODON USAGE IN GENES OF INBREEDING AND OUTCROSSING TRITICEAE SPECIES - (Abstract)

Akhunov, E.D., David, J.L., Chao, S., Lazo, G.R., Anderson, O.D., Qi, L., Echalier, B., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Gc composition and codon usage in genes of inbreeding and outcrossing triticeae species. In: Proceedings of International Wheat Genetics Symposium, September 1-6, 2003, Paestum, Italy. p. 203-206.

NEW INSIGHTS INTO THE ORGANIZATION AND EVOLUTION OF WHEAT GENOMES - (Proceedings/Symposium)

Dvorak, J., Akhunov, E.D., Akhunov, A.R., Luo, M., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Choi, D., Close, T.J., Mcguire, P.E., Qualset, C.O. 2003. New insights into the organization and evolution of wheat genomes. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 248-253.

A PHYSICAL MAP OF EXPRESSED SEQUENCE TAGS AND FUNCTIONAL GENOMICS IN THE GROUP I CHROMOSOMES OF WHEAT, TRITICUM AESTIVUM - (Abstract)

Peng, J.H., Zadeh, H., Lazo, G.R., Qi, L., Echalier, B., Gill, B.S., Chao, S., Anderson, O.D., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K., Kianian, S.F., Miftahudin, Gustafson, J.P., Wennerlind, E., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Lapitan, N.V. 2003. A physical map of expressed sequence tags and functional genomics in the group i chromosomes of wheat, triticum aestivum. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p.1035-1037.

A TRANSCRIPTOME MAP OF WHEAT - (Abstract)

Gill, B.S., Qi, L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Bermidez-Kandianis, C.E., Greene, R.A., La Rota, M., Sorrells, M.E., Dilbirligi, M., Sidhu, D., Eryman, M., Gill, K.S., Miftahudin, Ma, X., Mahmoud, A., Gustafson, J.P., Wennerlind, E.J., Nduati, V., Gonzalez-Hernandez, L., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K., Kalavacharla, V., Kianian, S.F., Pathan, M.S., Nguyen, H.T., Choi, D., Close, T.J., Mcguire, P.E., Qualset, C.O. 2003. A transcriptome map of wheat. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 261-264.

FOCUS ON THE GENOME: THE INSPIRED COLLABORATION OF E.S. MCFADDEN AND E.R. SEARS - (Proceedings/Symposium)

Ross, K., Gustafson, J.P. 2003. Focus on the genome: the inspired collaboration of e.s. mcfadden and e.r. sears. In: Proceedings of International Wheat Genetics Symposium, September 1-6, 2003, Paestum, Italy. p. 512-514.

ALUMINUM TOLERANCE IN CEREALS - (Abstract)

Rodriguez Milla, M.A., Miftahudin, Gustafson, J.P. 2003. Aluminum tolerance in cereals. In: Proceedings of "In the Wake of the Double Helix: From the Green Revolution to the Gene Revolution" symposium, May 27-31, 2003, Bologna, Italy. p. 39.

COMPARATIVE DNA SEQUENCE ANALYSIS OF WHEAT AND RICE GENOMES - (Peer Reviewed Journal)

Sorrells, M.E., La Rota, C.M., Bermudez, C.E., Greene, R.A., Kantety, R., Miftahudin, Mahmoud, A., Gustafson, J.P., Qi, L.L., Echalier, B. 2003. Comparative DNA sequence analysis of wheat and rice genomes. Genome Research. 13(8):1818-1827.

WHEAT AND RYE GENOME CODING SEQUENCE VARIATION IN TRITICALE - (Abstract) - (07-Mar-03)

THE ORGANIZATION AND RATE OF EVOLUTION OF THE WHEAT TRANSCRIPTOME ARE CORRELATED WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS - (Peer Reviewed Journal)

AKHUNOV, E.D., LAZO, G.R., CHAO, S., ANDERSON, O.D., GUSTAFSON, J.P., WALKER-SIMMONS, M.K., STEBER, C.M. THE ORGANIZATION AND RATE OF EVOLUTION OF THE WHEAT TRANSCRIPTOME ARE CORRELATED WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS. GENOME RESEARCH. 2003. V. 13(5). P. 753-763.

THE ORGANIZATION AND RATE OF EVOLUTION OF THE WHEAT TRANSCRIPTOME ARE CORRELATED WITH RECOMBINATION RATES ALONG WHEAT CHROMOSOME ARMS - (Peer Reviewed Journal)

Akhunov, E.D., Goodyear, A.J., Geng, S., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., Lazo, G.R., Chao, W.S. 2003. The organization and rate of evolution of the wheat transcriptome are correlated with recombination rates along wheat chromosome arms. Genome Research. 13(5):753-763.

RICE GENOME AS A TOOL FOR CLONING ALUMINUM TOLERANCE GENE IN RYE (SECALE CEREALE L.) - (Proceedings/Symposium)

Miftahudin, Chikmawati, T., Gustafson, J.P. 2003. Rice genome as a tool for cloning aluminum tolerance gene in rye (secale cereale l.)[abstract]. In: XI Plant and Animal Genome Conference Proceedings, January 11-15, 2003, San Diego, California. p.100.

GENOME STUDIES OF THE WHEAT/RYE HYBRID TRITICALE - (Abstract)

MA, X.F., RODRIGUEZ-MILLA, M.A., GUSTAFSON, J.P. GENOME STUDIES OF THE WHEAT/RYE HYBRID TRITICALE [abstract]. PLANT AND ANIMAL GENOME ABSTRACTS. 2003. p. 165.

BIN-MAPPING IN WHEAT:TOWARD A PHYSICAL MAP OF WHEAT USING ESTS AND DELETION STOCKS - (Abstract)

Anderson, O.D., Anderson, J.A., Close, T.J., Dubcovsky, J., Dvorak, J., Gill, B.S., Gill, K.S., Gustafson, J.P., Kianian, S.F., Lapitan, N., Nguyen, H., Sorrells, M., Steber, C.M., Mcguire, P.E., Qualset, C.O. 2003. Bin-mapping in wheat:toward a physical map of wheat using ests and deletion stocks. XI Plant and Animal Genome Conference Proceedings, January 11-15, 2003, San Diego, California. p. 84.

DELETION MAPPING OF EXPRESSED SEQUENCE TAGS AND FUNCTIONAL GENOMICS IN THE GROUP 1 CHROMOSOMES OF WHEAT, TRITICUM AESTIVUM - (Abstract)

Peng, J., Zadeh, H., Qi, L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Miftahudin, Gustafson, J.P., Dake, T., Sorrells, M.E., Hossain, K., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Zhang, D., Nguyen, H.T., Wennerlind, E., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Lapitan, N. 2003. Deletion mapping of expressed sequence tags and functional genomics in the group 1 chromosomes of wheat, triticum aestivum [abstract]. XI Plant and Animal Genome Conference. p. 164.

EXPRESSED SEQUENCE TAG-BASED GENE EXPRESSION ANALYSIS UNDER ALUMINUM STRESS IN RYE - (Peer Reviewed Journal)

RODRIGUEZ-MILLA, M.A., BUTLER, G.E., RODRIGUEZ-HUETE, A., WILSON, C., ANDERSON, O.D., GUSTAFSON, J.P. EXPRESSED SEQUENCE TAG-BASED GENE EXPRESSION ANALYSIS UNDER ALUMINUM STRESS IN RYE. PLANT PHYSIOLOGY. 2002. v. 130. p. 1706-1716.

A GENETIC MAP OF MOLECULAR MARKERS IN TRITICOSECALE WITTMACK - (Abstract)

Gonzalez, J.M., Gustafson, J.P., Jouve, N., Muniz, L.M. 2002. A genetic map of molecular markers in triticosecale wittmack [abstract]. International Triticale Symposium. p. 85-93.

AFLP MARKERS TIGHTLY LINKED TO THE ALUMINUM TOLERANCE GENE ALT3 IN RYE (SECALE CEREALE L) - (Peer Reviewed Journal)

MIFTAHUDIN, SCOLES, G.J., GUSTAFSON, J.P. AFLP MARKERS TIGHTLY LINKED TO THE ALUMINUM TOLERANCE GENE ALT3 IN RYE (SECALE CEREALE L). THEORETICAL AND APPLIED GENETICS. 2002. V. 104(4). P. 626-631.