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Journal Publications for Center:
HSRC (2001) - Western Region Hazardous Substance Research Center for Developing In-Situ Processes for VOC Remediation in Groundwater and Soils
Grant Number R828772
| Reference Type | Citation | Progress Report Year | Document Sources |
|---|---|---|---|
| Journal Article | Achong GR, Rodriguez AM, Spormann AM. Benzylsuccinate synthase of Azoarcus sp. strain T: cloning, sequencing, transcriptional organization, and its role in anaerobic toluene and m-xylene mineralization. Journal of Bacteriology 2001;183(23):6763-6770. |
R828772 (Final) |
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| Journal Article | Arp DJ, Yeager CM, Hyman MR. Molecular and cellular fundamentals of aerobic cometabolism of trichloroethylene. Biodegradation 2001;12(2):81-103. |
R825689C027 (Final) R828772 (2002) R828772 (Final) |
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| Journal Article | Benekos ID, Cirpka OA, Kitanidis PK. Experimental determination of transverse dispersivity in a helix and a cochlea. Water Resources Research 2006;42:W07406, doi:10.1029/2005WR004712. |
R828772 (Final) |
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| Journal Article | Cantrell KM, Ingle Jr JD. The SLIM spectrometer. Analytical Chemistry 2003;75(1):27-35. |
R828772 (2002) R828772 (2003) R828772 (Final) R828772C007 (2001) |
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| Journal Article | Cantrell K, Ingle Jr. JD. Design and evaluation of a membrane sampling spectrometer array for real-time, in-situ depth profiling of sub-surface waters. Aquatic Sciences-Research Across Boundaries. |
R828772 (2003) |
not available |
| Journal Article | Cheng H, Reinhard M. Measuring hydrophobic micropore volumes in geosorbents from trichloroethylene desorption data. Environmental Science & Technology 2006;40(11):3595-3602. |
R828772 (Final) R828772C014 (2005) |
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| Journal Article | Cheng H, Reinhard M. Sorption of trichloroethylene in hydrophobic micropores of dealuminated Y zeolites and natural minerals. Environmental Science & Technology 2006;40(24):7694-7701. |
R828772 (Final) R828772C014 (2005) |
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| Journal Article | Cheng H, Reinhard M. Sorption and inhibited dehydrohalogenation of 2,2-dichloropropane in micropores of dealuminated Y zeolites. Environmental Science & Technology 2007;41(6):1934-1941. |
R828772 (Final) |
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| Journal Article | Chu M, Kitanidis PK, McCarty PL. Effects of biomass accumulation on microbially enhanced dissolution of a PCE pool: a numerical simulation. Journal of Contaminant Hydrology 2003;65(1-2):79-100. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Cunningham JA, Deitsch JJ, Smith JA, Reinhard M. Quantification of contaminant sorption-desorption time-scales from batch experiments. Environmental Toxicology and Chemistry 2005;24(9):2160-2166. |
R828772 (Final) R828772C014 (2005) |
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| Journal Article | Cupples AM, Spormann AM, McCarty PL. Growth of a dehalococcoides-like microorganism on vinyl chloride and cis-dichloroethene as electron acceptors as determined by competitive PCR. Applied and Environmental Microbiology 2003;69(2):953-959. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Cupples AM, Spormann AM, McCarty PL. Comparative evaluation of chloroethene dechlorination to ethene by dehalococcoides-like microorganisms. Environmental Science & Technology 2004;38(18):4768-4774. |
R828772 (2004) R828772 (Final) |
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| Journal Article | Doughty DM, Sayavedra-Soto LA, Arp DJ, Bottomley PJ. Effects of dichloroethene isomers on the induction and activity of butane monooxygenase in the alkane-oxidizing bacterium “Pseudomonas butanovora.” Applied and Environmental Microbiology 2005;71(10):6054-6059. |
R828772 (2003) R828772 (Final) R828772C010 (2005) |
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| Journal Article | Doughty DM, Sayavedra-Soto LA, Arp DJ, Bottomley PJ. Product repression of alkane monooxygenase expression in Pseudomonas butanovora. Journal of Bacteriology 2006;188(7):2586-2592. |
R828772 (Final) R828772C010 (2005) |
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| Journal Article | Doughty DM, Halsey KH, Vieville CJ, Sayavedra-Soto LA, Arp DJ, Bottomley PJ. Propionate inactivation of butane monooxygenase activity in ‘Pseudomonas butanovora’: biochemical and physiological implications. Microbiology 2007;153(Pt 11):3722-3729. |
R828772 (Final) |
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| Journal Article | Doughty DM, Arp DJ, Bottomley PJ. Dichloroethylenes as substrates and inducers of butane monooxygenase in Pseudomonas butanovora. Microbiology. |
R828772 (2003) |
not available |
| Journal Article | Dupin HJ, Kitanidis PK, McCarty PL. Pore-scale modeling of biological clogging due to aggregate expansion: a material mechanics approach. Water Resources Research 2001;37(12):2965-2979. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Dupin HJ, Kitanidis PK, McCarty PL. Simulations of two-dimensional modeling of biomass aggregate growth in network models. Water Resources Research 2001;37(12):2981-2994. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Field JA, Istok JD, Semprini L, Bennett P, Buscheck TE. Trichlorofluoroethene: a reactive tracer for evaluating reductive dechlorination in large-diameter permeable columns. Ground Water Monitoring & Remediation 2005;25(2):68-77. |
R828772 (2005) R828772 (Final) |
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| Journal Article | Fienen MN, Luo J, Kitanidis PK. Semi-analytical homogeneous anisotropic capture zone delineation. Journal of Hydrology 2005;312(1-4):39-50. |
R828772 (2003) R828772 (Final) |
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| Journal Article | Fienen MN, Luo J, Kitanidis PK. A Bayesian geostatistical transfer function approach to tracer test analysis. Water Resources Research 2006;42:W07426, doi:10.1029/2005WR004576. |
R828772 (Final) |
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| Journal Article | Frascari D, Kim Y, Dolan ME, Semprini L. A kinetic study of aerobic propane uptake and cometabolic degradation of chloroform, cis-Dichloroethylene and trichloroethylene in microcosms with groundwater/Aquifer Solids. Water, Air, & Soil Pollution: Focus 2003;3(3):285-298. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Gandhi RK, Hopkins GD, Goltz MN, Gorelick SM, McCarty PL. Full-scale demonstration of in situ cometabolic biodegradation of trichloroethylene in groundwater 1. Dynamics of a recirculating well system. Water Resources Research 2002;38(4):1039, doi:10.1029/2001WR000379. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Gandhi RK, Hopkins GD, Goltz MN, Gorelick SM, McCarty PL. Full-scale demonstration of in situ cometabolic biodegradation of trichloroethylene in groundwater 2. Comprehensive analysis of field data using reactive transport modeling. Water Resources Research 2002;38(4):1040, doi:10.1029/2001WR000380. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Goltz MN, Williamson KJ. Transfer and commercialisation of contaminated groundwater remediation technologies. International Journal of Technology Transfer and Commercialisation 2002;1(4):329-346. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Halsey KH, Sayavedra-Soto LA, Bottomley PJ, Arp DJ. Trichloroethylene degradation by butane-oxidizing bacteria causes a spectrum of toxic effects. Applied Microbiology and Biotechnology 2005;68(6):794-801. |
R828772 (2003) R828772 (Final) R828772C010 (2005) |
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| Journal Article | Halsey KH, Sayavedra-Soto LA, Bottomley PJ, Arp DJ. Site-directed amino acid substitutions in the hydroxylase α subunit of butane monooxygenase from Pseudomonas butanovora: implications for substrates knocking at the gate. Journal of Bacteriology 2006;188(13):4962-4969. |
R828772 (Final) |
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| Journal Article | Halsey KH, Doughty DM, Sayavedra-Soto LA, Bottomley PJ, Arp DJ. Evidence for modified mechanisms of chloroethene oxidation in Pseudomonas butanovora mutants containing single amino acid substitutions in the hydroxylase α-subunit of butane monooxygenase. Journal of Bacteriology 2007;189(14):5068-5074. |
R828772 (Final) |
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| Journal Article | Hardison LK, Curry SS, Ciuffetti LM, Hyman MR. Metabolism of diethyl ether and cometabolism of methyl tert-butyl ether by a filamentous fungus, a Graphium sp. Applied and Environmental Microbiology 1997;63(8):3059-3067. |
R823426 (Final) R825689C020 (Final) R828772 (2003) |
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| Journal Article | Johnson HA, Pelletier DA, Spormann AM. Isolation and characterization of anaerobic ethylbenzene dehydrogenase, a Novel Mo-Fe-S enzyme. Journal of Bacteriology 2001;183(15):4536-4542. |
R825689C092 (Final) R828772 (2002) R828772 (Final) |
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| Journal Article | Jones BD, Ingle Jr JD. Evaluation of immobilized redox indicators as reversible, in situ redox sensors for determining Fe(III)-reducing conditions in environmental samples. Talanta 2001;55(4):699-714. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Jones BD, Ingle Jr JD. Evaluation of redox indicators for determining sulfate-reducing and dechlorinating conditions. Water Research 2005;39(18):4343-4354. |
R828772 (Final) R828772C011 (2005) |
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| Journal Article | Kim Y, Arp DJ, Semprini L. A combined method for determining inhibition type, kinetic parameters, and inhibition coefficients for aerobic cometabolism of 1,1,1-trichloroethane by a butane-grown mixed culture. Biotechnology and Bioengineering 2002;77(5):564-576. |
R828772 (2002) R828772 (Final) R828772C003 (2002) |
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| Journal Article | Kim Y, Arp DJ, Semprini L. Kinetic and inhibition studies for the aerobic cometabolism of 1,1,1-trichloroethane, 1,1-dichloroethylene, and 1,1-dichloroethane by a butane-grown mixed culture. Biotechnology and Bioengineering 2002;80(5):498-508. |
R828772 (2002) R828772 (Final) R828772C003 (2002) |
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| Journal Article | Kim Y, Semprini L. Cometabolic transformation of cis-1,2-dichloroethylene and cis-1,2-dichloroethylene epoxide by a butane-grown mixed culture. Water Science & Technology 2005;52(8):125-131. |
R828772 (Final) R828772C010 (2005) |
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| Journal Article | Lee IS, Bae JH, Yang Y, McCarty PL. Simulated and experimental evaluation of factors affecting the rate and extent of reductive dehalogenation of chloroethenes with glucose. Journal of Contaminant Hydrology 2004;74(1-4):313-331. |
R828772 (2004) R828772 (Final) |
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| Journal Article | Luo J, Kitanidis PK. Fluid residence times within a recirculation zone created by an extraction-injection well pair. Journal of Hydrology 2004;295(1-4):149-162. |
R828772 (2003) R828772 (2004) R828772 (Final) R828772C013 (2005) |
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| Journal Article | Luo J, Wu W, Fienen MN, Jardine PM, Mehlhorn TL, Watson DB, Cirpka OA, Criddle CS, Kitanidis PK. A nested-cell approach for in situ remediation. Ground Water 2006;44(2):266-274. |
R828772 (Final) |
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| Journal Article | Luo J, Cirpka OA, Kitanidis PK. Temporal-moment matching for truncated breakthrough curves for step or step-pulse injection. Advances in Water Resources 2006;29(9):1306-1313. |
R828772 (Final) R828772C013 (2005) |
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| Journal Article | McMurdie PJ, Behrens SF, Holmes S, Spormann AM. Unusual codon bias in vinyl chloride reductase genes of Dehalococcoides species. Applied and Environmental Microbiology 2007;73(8):2744-2747. |
R828772 (Final) |
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| Journal Article | Muller JA, Rosner BM, von Abendroth G, Meshulam-Simon G, McCarty PL, Spormann AM. Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution. Applied and Environmental Microbiology 2004;70(8):4880-4888. |
R828772 (2004) R828772 (Final) |
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| Journal Article | Munakata N, Reinhard M. Palladium-catalyzed aqueous hydrodehalogenation in column reactors: modeling of deactivation kinetics with sulfide and comparison of regenerants. Applied Catalysis B: Environmental 2007;75(1-2):1–10. |
R828772 (Final) |
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| Journal Article | Munakata N, Reinhard M. Palladium catalysis for the treatment of waters contaminated with halogenated hydrocarbons, nonhalogenated aromatics, oxidized carbon, and oxidized nitrogen species. Environmental Science and Technology. |
R828772 (2002) |
not available |
| Journal Article | Niemet MR, Semprini L. Column studies of anaerobic carbon tetrachloride biotransformation with hanford aquifer material. Ground Water Monitoring & Remediation 2005;25(3):82-92. |
R828772 (2005) R828772 (Final) |
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| Journal Article | Pon G, Hyman MR, Semprini L. Acetylene inhibition of trichloroethene and vinyl chloride reductive dechlorination. Environmental Science & Technology 2003;37(14):3181-3188. |
R828772 (2003) R828772 (Final) |
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| Journal Article | Pon G, Semprini L. Anaerobic reductive dechlorination of 1-chloro-1-fluoroethene to track the transformation of vinyl chloride. Environmental Science & Technology 2004;38(24):6803-6808. |
R828772 (2004) R828772 (Final) R828772C012 (2005) |
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| Journal Article | Pon G, Semprini L. The use of anaerobic reductive dechlorination of 1,1-chlorofluoroethene to track the transformation of vinyl chloride. Environmental Science & Technology 2004;38(24):6803-6808. |
R828772 (2003) |
not available |
| Journal Article | Ruiz-Haas P, Ingle Jr JD. Monitoring redox conditions with flow-based and fiber optic sensors based on redox indicators: application to reductive dehalogenation in a bioaugmented soil column. Geomicrobiology Journal 2007;24(3&4):365-378. |
R828772 (Final) |
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| Journal Article | Sayavedra-Soto LA, Doughty DM, Kurth EG, Bottomley PJ, Arp DJ. Product and product-independent induction of butane oxidation in Pseudomonas butanovora. FEMS Microbiology Letters 2005;250(1):111-116. |
R828772 (Final) |
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| Journal Article | Schroth MH, Istok JD. Approximate solution for solute transport during spherical-flow push-pull tests. Ground Water 2005;43(2):280-284. |
R828772 (2005) R828772 (Final) |
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| Journal Article | Semprini L, Dolan ME, Mathias MA, Hopkins GD, McCarty PL. Bioaugmentation of butane-utilizing microorganisms for the in situ cometabolic treatment of 1,1-dichloroethene, 1,1-dichloroethane, and 1,1,1-trichloroethane. European Journal of Soil Biology 2007;43(5-6):322-327. |
R828772 (Final) |
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| Journal Article | Semprini L, Dolan ME, Mathias MA, Hopkins GD, McCarty PL. Laboratory, field, and modeling studies of bioaugmentation of butane-utilizing microorganisms for the in situ cometabolic treatment of 1,1-dichloroethene, 1,1-dichloroethane, and 1,1,1-trichloroethane. Advances in Water Resources 2007;30(6-7):1528-1546. |
R828772 (Final) |
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| Journal Article | Skinner KM, Martinez-Prado A, Hyman MR, Williamson KJ, Ciuffetti LM. Pathway, inhibition and regulation of methyl tertiary butyl ether oxidation in a filamentous fungus, Graphium sp. Applied Microbiology and Biotechnology 2008;77(6):1359-1365. |
R828772 (Final) |
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| Journal Article | Sriwatanapongse W, Reinhard M, Klug CA. Reductive hydrodechlorination of trichloroethylene by palladium-on-alumina catalyst: 13C solid-state NMR study of surface reaction precursors. Langmuir 2006;22(9):4158-4164. |
R828772 (Final) |
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| Journal Article | Taylor AE, Dolan ME, Bottomley PJ, Semprini L. Utilization of fluoroethene as a surrogate for aerobic vinyl chloride transformation. Environmental Science & Technology 2007;41(18):6378-6383. |
R828772 (Final) |
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| Journal Article | Yang Y, McCarty PL. Comparison between donor substrates for biologically enhanced tetrachloroethene DNAPL dissolution. Environmental Science & Technology 2002;36(15):3400-3404. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Yeager CM, Bottomley PJ, Arp DJ. Cytotoxicity associated with trichloroethylene oxidation in Burkholderia cepacia G4. Applied and Environmental Microbiology 2001;67(5):2107-2115. |
R825689C027 (Final) R828772 (2002) R828772 (Final) |
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| Journal Article | Yeager CM, Bottomley PJ, Arp DJ. Requirement of DNA repair mechanisms for survival of Burkholderia cepacia G4 upon degradation of trichloroethylene. Applied and Environmental Microbiology 2001;67(12):5384-5391. |
R828772 (2002) R828772 (Final) |
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| Journal Article | Yeager CM, Arthur KM, Bottomley PJ, Arp DJ. Trichloroethylene degradation by toluene-oxidizing bacteria grown on non-aromatic substrates. Biodegradation 2004;15(1):19-28. |
R828772 (2003) R828772 (2004) R828772 (Final) R828772C010 (2005) |
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| Journal Article | Yu S, Semprini L. Comparison of trichloroethylene reductive dehalogenation by microbial communities stimulated on silicon-based organic compounds as slow-release anaerobic substrates. Water Research 2002;36(20):4985-4996. |
R828772 (2002) R828772 (Final) R828772C001 (2001) |
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| Journal Article | Yu S, Semprini L. Kinetics and modeling of reductive dechlorination at high PCE and TCE concentrations. Biotechnology and Bioengineering 2004;88(4):451-464. |
R828772 (2004) R828772 (Final) |
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| Journal Article | Yu S, Dolan ME, Semprini L. Kinetics and inhibition of reductive dechlorination of chlorinated ethylenes by two different mixed cultures. Environmental Science & Technology 2005;39(1):195-205. |
R828772 (2003) R828772 (Final) R828772C012 (2005) |
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