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Publications for Center:
New Jersey Research Center for Environmental Bioinformatics and Computational Toxicology
Grant Number R832721
| Reference Type | Citation | Progress Report Year | Document Sources |
|---|---|---|---|
| Book Chapter | Floudas CA, Fung HK. Mathematical modeling and optimization methods for de novo protein design. In: Rigoutsos I, Stephanopoulos G, eds. Systems Biology, Volume II: Networks, Models, and Applications. Chapter 2. USA: Oxford University Press, 2006, pp. 42-66. |
R832721 (2007) R832721C005 (2006) |
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| Book Chapter | Isukapalli SS, Roy A. General principles of programming (computer and statistical). In: Ette EI, Williams PJ, eds. Pharmacometrics: The Science of Quantitative Pharmacology. Chapter 2. Wiley, 2007, pp. 25-52. |
R832721 (2007) R832721C001 (2006) |
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| Book Chapter | Isukapalli SS, Roy A, Georgopoulos PG. Physiologically based pharmacokinetic modeling: inhalation, ingestion, and dermal absorption. In: Ette EI, Williams PJ, eds. Pharmacometrics: The Science of Quantitative Pharmacology. Chapter 43. Wiley, 2007, pp. 1069-1106. |
R832721 (2007) R832721C001 (2006) |
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| Book Chapter | Welsh WJ, Tong W, Georgopoulos PG. Toxicoinformatics: an introduction. In: Ekins S, ed. Computational Toxicology: Risk Assessment for Pharmaceutical and Environmental Chemicals. Chapter 6. Wiley, 2007, pp. 151-181. |
R832721 (2007) R832721C001 (2006) R832721C004 (2006) |
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| Journal Article | Androulakis IP, Yang E, Almon RR. Analysis of time-series gene expression data: methods, challenges, and opportunities. Annual Review of Biomedical Engineering 2007;9:205-228. |
R832721 (2007) |
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| Journal Article | Davis E, Ierapetritou M. A kriging method for the solution of nonlinear programs with black-box functions. AIChE Journal 2007;53(8):2001-2012. |
R832721 (2007) |
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| Journal Article | DiMaggio Jr PA, Floudas CA. A mixed-integer optimization framework for de novo peptide identification. AIChE Journal 2007;53(1):160-173. |
R832721 (2007) R832721C005 (2006) |
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| Journal Article | DiMaggio Jr PA, Floudas CA. De novo peptide identification via tandem mass spectrometry and integer linear optimization. Analytical Chemistry 2007;79(4):1433-1446. |
R832721 (2007) |
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| Journal Article | Ekins S, Chang C, Mani S, Krasowski MD, Reschly EJ, Iyer M, Kholodovych V, Ai N, Welsh WJ, Sinz M, Swaan PW, Patel R, Bachmann K. Human pregnane X receptor antagonists and agonists define molecular requirements for different binding sites. Molecular Pharmacology 2007;72(3):592-603. |
R832721 (2007) |
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| Journal Article | Floudas CA. Computational methods in protein structure prediction. Biotechnology and Bioengineering 2007;97(2):207-213. |
R832721 (2007) |
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| Journal Article | Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. An indirect response model of endotoxin-induced systemic inflammation. Journal of Critical Care 2007;22(4):337-338. |
R832721 (2007) |
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| Journal Article | Fung HK, Welsh WJ, Floudas CA. Computational de novo peptide and protein design: rigid templates versus flexible templates. Industrial & Engineering Chemistry Research 2008;47(4):993-1001. |
R832721 (2007) |
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| Journal Article | Georgopoulos PG. A multiscale approach for assessing the interactions of environmental and biological systems in a holistic health risk assessment framework. Water, Air, & Soil Pollution: Focus 2008;8(1):1567-7230. |
R832721 (2007) |
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| Journal Article | Jiao Y, Su M, Chen M, Jia W, Chou Y, Huang Z, Yang N, Tong W. LC/ESI-MS method for the determination of trimetazidine in human plasma: application to a bioequivalence study on Chinese volunteers. Journal of Pharmaceutical and Biomedical Analysis 2007;43(5):1804-1807. |
R832721 (2007) |
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| Journal Article | Jornsten R, Ouyang M, Wang H-Y. A meta-data based method for DNA microarray imputation. BMC Bioinformatics 2007;8:109. |
R832721 (2007) |
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| Journal Article | McAllister SR, Mickus BE, Klepeis JL, Floudas CA. Novel approach for α-helical topology prediction in globular proteins: generation of interhelical restraints. Proteins: Structure, Function, and Bioinformatics 2006;65(4):930-952. |
R832721 (2007) |
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| Journal Article | Rajgaria R, McAllister SR, Floudas CA. A novel high resolution Cα—Cα distance dependent force field based on a high quality decoy set. Proteins: Structure, Function, and Bioinformatics 2006;65(3):726-741. |
R832721 (2007) R832721C005 (2006) |
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| Journal Article | Wang CY, Ai N, Arora S, Erenrich E, Nagarajan K, Zauhar R, Young D, Welsh WJ. Identification of previously unrecognized antiestrogenic chemicals using a novel virtual screening approach. Chemical Research in Toxicology 2006;19(12):1595-1601. |
R832721C004 (2006) |
not available |
| Journal Article | Yang E, Foteinou PT, King KR, Yarmush ML, Androulakis IP. A novel non-overlapping bi-clustering algorithm for network generation using living cell array data. Bioinformatics 2007;23(17):2306-2313. |
R832721 (2007) |
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| Journal Article | Yang E, Maguire T, Yarmush ML, Berthiaume F, Androulakis IP. Bioinformatics analysis of the early inflammatory response in a rat thermal injury model. BMC Bioinformatics 2007;8:10. |
R832721 (2007) |
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| Journal Article | Yang E, Simcha D, Almon RR, Dubois DC, Jusko WJ, Androulakis IP. Context specific transcription factor prediction. Annals of Biomedical Engineering 2007;35(6):1053-1067. |
R832721 (2007) |
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| Journal Article | Yang E, Almon RR, DuBois DC, Jusko WJ, Androulakis IP. Extracting global system dynamics of corticosteroid genomic effects in rat liver. Journal of Pharmacology and Experimental Therapeutics 2008;324(3):1243-1254. |
R832721 (2007) |
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| Journal Article | Yang E, Maguire TJ, Yarmush ML, Berthiaume F, Androulakis IP. Identification of regulatory mechanisms of the hepatic response to thermal injury. Computers & Chemical Engineering 2008;32(1-2):356-369. |
R832721 (2007) |
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| Journal Article | Yang E, Maguire T, Yarmush ML, Androulakis IP. Informative gene selection and design of regulatory networks using integer optimization. Computers & Chemical Engineering 2008;32(4-5):633-649. |
R832721 (2007) |
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| Presentation | Ai N, Yu S-J, Delisle RK, Welsh WJ. Computational models for predicting the binding affinities of ligands for the androgen receptor. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Ai N, Chekmarev D, Zhang P, Kholodovych V, Welsh WJ. Shape signatures database of PDB-extracted ligands for computational toxicology. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Androulakis IP. Analysis of interaction networks from clusters of co-expressed genes: a case study in inflammation. Presented at the DIMACS Workshop on Clustering Problems in Biological Networks, New Brunswick, NJ, May 9, 2006. |
R832721C002 (2006) |
not available |
| Presentation | Chekmarev D, Ai N, Kholodovych V, Kortagere S, Welsh WJ. Shape signatures: a novel tool for computational toxicology. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Chekmarev D, Ai N, Kholodovych V, Kortagere S, Welsh WJ. Progress in development of the shape signatures tool for computational toxicology. Systems Toxicology: Presented at the Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Chen M, Tong W, Welsh W, Georgopoulos PG. Gene expression profiles of rodent pulmonary tissue following sulfur mustard exposure using ArrayTrack. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
not available |
| Presentation | DiMaggio PA, Floudas CA. De novo peptide identification via tandem mass spectrometry and mixed-integer linear optimization. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
not available |
| Presentation | DiMaggio PA, Tan MP, Floudas CA. Optimization tools for the identification of (I) peptides and proteins, and (II) gene clusters. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
not available |
| Presentation | DiMaggio PA, Floudas CA. Optimization tools for in silico proteomics. Info on Informatics Seminar Series. Presented at the USEPA National Center for Computational Toxicology, Research Triangle Park, NC, March 14, 2007. |
R832721 (2007) |
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| Presentation | Euling SY, Makris S, Sen B, Kim AS, Benson B, Gaido KW, Wilson VS, Keshava C, Keshava N, White L, Foster PM, Androulakis IP, Ovacik M, Ierapetritou MG, Gray LE, Thompson C, Barone S, Chiu W, Welsh W, Georgopoulos PG. Use of toxicogenomics data in risk assessment: a case study on dibutyl phthalate and male reproductive developmental effects. Presented at the Society of Toxicology Annual Meeting and ToxExpo, Charlotte, NC, March 25-29, 2007. |
R832721 (2007) |
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| Presentation | Euling S, Sen B, Welsh W, Georgopoulos PG, Ovacik M, Ierapetritou MG, Androulakis I. Expression profiling to assess developmental effects of exposure to DBP. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Euling S, Sen B, Welsh W, Georgopoulos PG, Ovacik M, Ierapetritou MG, Androulakis I. Temporal expression profiling to assess dynamics of exposure to DBP. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Euling S, Makris S, Sen B, White L, Benson B, Gaido KW, Kim AS, Hester S, Wilson V, Keshava C, Keshava N, Foster PM, Androulakis IP, Ovacik M, Ierapetritou MG, Gray Jr LE, Thompson C, Chiu W, Welsh WJ, Georgopoulos PG. Use of toxicogenomics data in risk assessment: a case study on dibutyl phthalate and male reproductive developmental effects. Presented at the 2007 International Science Forum on Computational Toxicology, Research Triangle Park, NC, May 21-23, 2007. |
R832721 (2007) |
not available |
| Presentation | Feng XJ, Rabitz H. Development of computational tools for optimal identification of biological networks. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
not available |
| Presentation | Feng X-J, Li G, Rabitz H. A closed-loop identification protocol (CLIP) for nonlinear biological networks. Presented at the Info on Informatics Seminar Series, USEPA National Center for Computational Toxicology, Research Triangle Park, NC, October 11, 2006. |
R832721 (2007) R832721C003 (2006) |
not available |
| Presentation | Floudas CA. De novo protein design. Invited lecture presented at the INFORMS International Conference, Hong Kong, China, June 25, 2006. |
R832721C005 (2006) |
not available |
| Presentation | Floudas CA. Structure prediction of alpha helical proteins. Invited lecture presented at the INFORMS International Conference, Hong Kong, China, June 25, 2006. |
R832721C005 (2006) |
not available |
| Presentation | Floudas CA. De novo protein design. Invited lecture presented to the Thomas Jefferson University Medical School, Philadelphia, PA, March 1, 2006. |
R832721C005 (2006) |
not available |
| Presentation | Floudas CA. De novo protein design. Invited lecture presented to the Department of Chemical and Biological Engineering, Koç University, Istanbul, Turkey, May 22, 2006. |
R832721C005 (2006) |
not available |
| Presentation | Floudas CA. Dynamics of macromolecules: optimization methods and tools for in silico proteomics. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
not available |
| Presentation | Foteinou PT, Yang E, Calvano SE, Lowry SF, Androulakis IP. Transcriptional analysis of the genome-wide response of leukocytes in an in vivo human model of systemic inflammation. Presented at the First International Conference on Biomolecular Engineering, Coronado, CA, January 14-18, 2007. |
R832721 (2007) |
not available |
| Presentation | Foteinou PT, Ierapetritou MG, Androulakis IP. A mixed-integer optimization model for the design of gene regulatory networks. Presented at the 4th International Conference on Advances in Global Optimization, Mykonos, Greece, June 12-17, 2007. |
R832721 (2007) |
not available |
| Presentation | Fung HK, Floudas CA. A novel computational framework for de novo protein design. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
not available |
| Presentation | Fung HK, McAllister SR, Rajgaria R, Floudas CA. Protein structure prediction and de novo protein design. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Georgopoulos PG. A holistic multiscale approach for assessing the interactions of environmental and biological systems (keynote presentation). Presented at the Protection and Restoration of the Environment VIII (PRE8) Conference, Chania, Greece, July 3-7, 2006. |
R832721C001 (2006) |
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| Presentation | Georgopoulos PG. Environment, genetics, human behavior and health: a systematic bioinformatic approach. (in Greek: Περιβάλλον, γονιδίωμα, ανθρώπινη συμπεριφορά και υγεία: Μια συστηματική βιοπληροφορική προσέγγιση). Presented to the Demokritos National Centre for Scientific Research, Athens, Greece, July 11-12, 2006. |
R832721C001 (2006) |
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| Presentation | Georgopoulos PG. Computational tools for the source to outcome paradigm. Presented at the Info on Informatics Teleseminar Series, U.S. EPA National Center for Computational Toxicology, Research Triangle Park, NC, June 14, 2006. |
R832721C001 (2006) |
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| Presentation | Georgopoulos PG, Isukapalli S, Wang SW, Sasso A. An overview of MENTOR and DORIAN. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Georgopoulos PG. An integrative framework for systems toxicology. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Georgopoulos PG, Welsh WJ, Isukapalli S, Ierapetritou M, Androulakis I, Roth CM, Tong W. Infrastructure for a virtual liver I: essential concepts and modules systems toxicology. Presented at the Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Georgopoulos PG, Isukapalli S, Wang SW. Overview of an integrated modeling system for supporting multiscale source-to-effect studies of human health risks. Presented at the USEPA Integrated Modeling Workshop, Research Triangle Park, NC, January 30, 2007. |
R832721 (2007) |
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| Presentation | Georgopoulos PG, Lioy PJ, Welsh WJ, Isukapalli S, Wang SW. Integrating enviroinformatic and bioinformatic approaches for the systematic analysis of environmentally related human health risks. Presented at the Meadowlands Symposium II, Lyndhurst, NJ, May 15-17, 2007. |
R832721 (2007) |
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| Presentation | Georgopoulos PG, Isukapalli S, Wang SW, Sasso A, Chen M, Tong W. Environmental systems biology framework for human health risk analysis. Presented at the 2007 International Science Forum on Computational Toxicology, Research Triangle Park, NC, May 21-23, 2007. |
R832721 (2007) |
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| Presentation | Gerecke DR, Chen M, Isukapalli S, Tong W, Ovacik MA, Foteinou PT, Androulakis IP, Welsh W, Georgopoulos PG. Differential gene expression profiling of mouse skin after sulfur mustard exposure: extended time response and inhibitor effect. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Guzikowski SA, Roth CM, Ierapetritou MG, Isukapalli S, Georgopoulos PG. Infrastructure for a virtual liver III: methods for metabolic analysis of xenobiotic interactions. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Guzikowski S, Ierapetritou MG, Roth CM. Modeling metabolic relationships in acetaminophen-induced hepatotoxicity. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Ierapetritou MG. A systems approach for analyzing complex processes. Invited talk presented to the University of Massachusetts, Amherst, MA, March 16, 2006. |
R832721C002 (2006) |
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| Presentation | Ierapetritou MG. Frameworks for analyzing complex networks from combustion to metabolism: effects of uncertainty. Invited talk presented to MIT, Cambridge, MA, March 24, 2006. |
R832721C002 (2006) |
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| Presentation | Isukapalli S, Sasso A, Wang SW, Ierapetritou MG, Georgopoulos PG. Optimized Bayesian inversion of biological data using mechanistic models. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Jornsten R. Flexible mixture modeling, with applications to gene clustering and the selection of differentially expressed genes. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Kholodovych V, Tabb MM, Blumberg B, Welsh WJ. Regulation of the clearance mechanism of environmental pollutants and xenobiotic chemicals by the Pregnane X Receptor (PXR): structural requirements and species to species extrapolation. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Kholodovych V, Tabb MM, Blumberg B, Welsh WJ. Structural characteristics of the pregnane X receptor in regulation of the clearance mechanism of environmental pollutants and xenobiotic chemicals. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Kortagere S, Welsh WJ. Structural analysis of toxicophore interactions with biomolecules. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Kortagere S, Welsh WJ. Structural analysis of toxicophore interactions with biomolecules. Presented at the 2007 International Science Forum on Computational Toxicology, Research Triangle Park, NC, May 21-23, 2007. |
R832721 (2007) |
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| Presentation | Li G, Feng X. Dynamics of bionetworks: tools for network identification and high-dimensional data analysis. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | McAllister SR, Mickus BE, Klepeis JL, Floudas CA. A novel approach for α-helical topology prediction in globular proteins. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Ovacik MA, Ierapetritou MG, Nesnow IPS, Hester S, Welsh W, Georgopoulos PG. Classification of triazole conazole fungicides: pathway analysis. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Ovacik MA, Androulakis IP, Ierapetritou MG, Euling S, Sen B, Gaido KW, Welsh WJ, Georgopoulos PG. Transcriptional analysis following in utero exposure to dibutyl phthalate (DBP) esters. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Ovacik M, Ierapetritou MG, Androulakis IP, Sen B, Euling S, Gaido K, Georgopoulos PG, Welsh W. Incorporating toxicogenomic data and approaches in risk assessment: case study-phthalate esters. Presented at the Info on Informatics Seminar Series, USEPA National Center for Computational Toxicology, Research Triangle Park, NC, April 11, 2007. |
R832721 (2007) |
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| Presentation | Ovacik M, Ierapetritou MG, Androulakis IP, Sen B, Euling S, Gaido K, Welsh W, Georgopoulos PG. Gene expression profiling following exposure to phthalate esters: an integrative toxicogenomics approach. Presented at the 2007 International Science Forum on Computational Toxicology, Research Triangle Park, NC, May 21-23, 2007. |
R832721 (2007) |
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| Presentation | Rabitz H, Feng X, Miller M, Li G. Reverse engineering of quantitative bionetwork architecture. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Rajgaria R, McAllister SR, Floudas CA. High resolution Cα—Cα and side chain centroid based distance dependent force fields. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Sasso A, Georgopoulos PG. Physiologically-based toxicokinetic models for toxic metal mixtures: development and demonstration of a mechanistically consistent framework. Presented at the SRA 2006 Annual Meeting-Risk Analysis in a Dynamic World: Making a Difference, Baltimore, MD, December 3-6, 2006. |
R832721 (2007) |
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| Presentation | Sasso A, Shade P, Isukapalli SS, Georgopoulos PG. Age and gender considerations in physiologically based population toxicokinetics. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Sasso A, Isukapalli SS, Georgopoulos PG. Physiologically-based population toxicokinetic models for mixtures of metals. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Sasso A, Isukapalli S, Georgopoulos PG. Biologically based Bayesian reconstruction of human exposures from biomarker data: application to chlorpyrifos. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Sasso A, Isukapalli S, Georgopoulos PG. Mechanistically consistent PBTK modeling framework for mixtures: application to toxic metals. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Sasso A, Isukapalli SS, Georgopoulos PG. Assessing exposure and dose of VOCs using physiologically-based toxicokinetic models. Presented at the ACC-LRI Workshop on VOC Exposure Modeling, Piscataway, NJ, June 20, 2007. |
R832721 (2007) |
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| Presentation | Sasso A, Isukapalli S, Georgopoulos PG. Mechanistically consistent PBTK modeling framework for mixtures of toxic metals. Presented at the 2007 International Science Forum on Computational Toxicology, Research Triangle Park, NC, May 21-23, 2007. |
R832721 (2007) |
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| Presentation | Tan MP, Broach JR, Floudas CA. A novel optimization-based iterative clustering approach to uncover biologically coherent structures. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Welsh WJ. New Jersey Center for Computational Toxicology Research. Invited talk presented at the New Jersey Homeland Security Conference, Monmouth University, West Long Branch, NJ, August 23, 2006. |
R832721C004 (2006) |
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| Presentation | Welsh WJ. ebCTC: Environmental Bioinformatics & Computational Toxicology Center. Invited talk presented at the Molecular Modeling Workshop, European Centre for the Validation of Alternative Methods (ECVAM), Ispra, Italy, February 20, 2006. |
R832721C004 (2006) |
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| Presentation | Welsh WJ. Environmental Bioinformatics & Computational Toxicology Center (ebCTC): introduction & overview. Invited talk presented to the Board of Scientific Counselors (BOSC) Computational Toxicology Subcommittee Meeting at the U.S. EPA National Center for Computational Toxicology (NCCT), Research Triangle Park, NC, June 19, 2006. |
R832721C004 (2006) |
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| Presentation | Welsh WJ. Novel approaches to QSAR and VFAR modeling. Invited talk presented at the Workshop on Quantitative Structure Activity Relationship (QSAR)/Virulence-Factor Activity Relationship (VFAR) [sponsored by the U.S. EPA in collaboration with Homeland Security Research Center], Cincinnati, OH, June 20, 2006. |
R832721C004 (2006) |
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| Presentation | Welsh WJ. What’s ahead in the information series. Presented at the Info on Informatics Teleseminar Series, U.S. Environmental Protection Agency National Center for Computational Toxicology, Research Triangle Park, NC, May 10, 2006 |
R832721C004 (2006) |
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| Presentation | Welsh WJ. ebCTC, introduction & overview. Invited talk presented at the Integrated Advanced Information Systems (IAIMS) Consortium Meeting, Phoenix, AZ, May 18, 2006. |
R832721C004 (2006) |
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| Presentation | Welsh WJ. Dynamics of small molecules: Cheminformatics tools for predictive toxicology. Presented at the Systems Toxicology: Multiscale Modeling of Environmental Impacts on Bionetworks-an ebCTC Workshop, EOHSI and DIMACS, Piscataway, NJ, April 26-27, 2007. |
R832721 (2007) |
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| Presentation | Welsh WJ, Kholodovych V, Chekmarev D, Georgopoulos PG. Shape signatures: a powerful new technology for risk assessment. Presented at the 2007 International Science Forum on Computational Toxicology, Research Triangle Park, NC, May 21-23, 2007. |
R832721 (2007) |
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| Presentation | Welsh W. Cheminformatics tools for toxicant identification and characterization. Presented at the Info on Informatics Seminar Series, USEPA National Center for Computational Toxicology, Research Triangle Park, NC, December 13, 2006. |
R832721 (2007) |
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| Presentation | Yang E, Androulakis IP. Assessing the information content of microarray data. Presented at the 28th Annual IEEE Engineering in Medicine Conference, New York, NY, August 30-September 3, 2006. |
R832721C002 (2006) |
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| Presentation | Yang E, Berthiaume F, Yarmush ML, Androulakis IP. An integrative systems biology approach for analyzing liver hypermetabolism. Presented at the 16th European Symposium on Computer-Aided Process Engineering and 9th International Symposium on Process Systems Engineering, Garmish-Partenkirchen, Germany, July 9-13, 2006. |
R832721C002 (2006) |
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| Presentation | Yang E, Androulakis IP. A non-independent model for transcription factor binding. Presented at the Biomedical Engineering Society (BMES) Fall Meeting, Los Angeles, September 2007. |
R832721 (2007) |
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| Presentation | Yang E, Foteinou PT, King KR, Yarmush ML, Androulakis IP. Extraction of transcriptional signaling networks via globally optimal biclustering. Presented at the Biomedical Engineering Society (BMES) Fall Meeting, Los Angeles, CA, September 2007. |
R832721 (2007) |
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| Presentation | Yang H, Yarmush ML, Roth C, Ierapetritou MG. Minimal reaction sets and metabolic pathways for cultured hepatocytes. Presented at the 16th European Symposium on Computer-Aided Process Engineering and 9th International Symposium on Process Systems Engineering, Garmisch-Partenkirchen, Germany, July 9-13, 2006. |
R832721C002 (2006) |
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| Presentation | Yang H, Roth CM, Ierapetritou MG. Reaction and pathway analysis of hepatic metabolism. Presented at the ebCTC Overview Workshop, Piscataway, NJ, November 17, 2006. |
R832721 (2007) |
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| Presentation | Yang YC, Xu X, Georgopoulos PG. Improving assessments of residential human exposures to chloroform via Bayesian PBTK modeling. Presented at the ACC-LRI Workshop on VOC Exposure Modeling, Piscataway, NJ, June 20, 2007. |
R832721 (2007) |
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| Proceedings | Georgopoulos PG. A holistic multiscale approach for assessing the interactions of environmental and biological systems. In: Proceedings of the Protection and Restoration of the Environment VIII (PRE8) Conference, Chania, Greece, July 3-7, 2006. |
R832721 (2007) R832721C001 (2006) |
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| Proceedings | Yang E, Berthiaume F, Yarmush ML, Androulakis IP. An integrative systems biology approach for analyzing liver hypermetabolism. In: Proceedings of the 16th European Symposium on Computer Aided Process Engineering and 9th International Symposium on Process Systems Engineering, Garmish-Partenkirchen, Germany, July 9-13, 2006, pp. 1655-1660. |
R832721 (2007) R832721C002 (2006) |
not available |
| Proceedings | Yang H, Yarmush ML, Roth C, Ierapetritou MG. Minimal reaction sets and metabolic pathways for cultured hepatocytes. In: Proceedings of the 16th European Symposium on Computer Aided Process Engineering and 9th International Symposium on Process Systems Engineering, Garmisch-Partenkirchen, Germany, July 9-13, 2006, pp. 1711-1716. |
R832721 (2007) R832721C002 (2006) |
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