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Toxic Substances Hydrology Program

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Bibliography
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Surface-Water Contaminant Transport

Research on the transport and fate of contaminants in surface water

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A

Aga, D.S., 1995,
Analytical applications of immunoassays in environmental and agricultural chemistry--study of the fate and transport of herbicides: Lawrence, University of Kansas, Department of Chemistry, Ph.D. thesis, 220 p.
Alpers, C.N., Antweiler, R.C., Taylor, H.E., Dileanis, P.D., and Domagalski, J.J., 2000,
Metals transport in the Sacramento River, California, 1996-97--Volume 2. Interpretation of metal loads: U.S. Geological Survey Water-Resources Investigations Report 00-4002, 106 p.
Alpers, C.N., Stewart, A.R., Saiki, M.K., Marvin-DiPasquale, M., Topping, B.R., Rider, K.M., Gallanthine, S.K., Kester, C.A., Rye, R.O., Antweiler, R.C., and DeWild, J.F., 2007,
Environmental factors affecting mercury in Camp Far West Reservoir, 2001--03: U.S. Geological Survey Scientific Investigations Report 2006-5008.
Alpers, C.N., Taylor, H.E., and Domagalski, J.J., 2000,
Metals transport in the Sacramento River, California, 1996-97--Volume 1. Methods and data: U.S. Geological Survey Water-Resources Investigations Report 99-4286, 428 p.
Alpers, C.N., Taylor, H.E., and Domagalski, J.J., 2000,
Summary and conclusions, in Alpers, C.N., Taylor, H.E., and Domagalski, J.J., eds., Metals transport in the Sacramento River, California, 1996-97--Volume 1. Methods and data: U.S. Geological Survey Water-Resources Investigations Report 99-4286, p. 98-99.
Alpers, C.N., Taylor, H.E., Roth, D.A., Cain, D.J., Ball, J.W., Unruh, D.M., and Deleanis, P.D., 2000,
Study design--Field and laboratory methods, in Alpers, C.N., Taylor, H.E., and Domagalski, J.J., eds., Metals transport in the Sacramento River, California, 1996-97--Volume 1. Methods and data: U.S. Geological Survey Water-Resources Investigations Report 99-4286, p. 19-37.
Antweiler, R.C., Dileanis, P.D., Alpers, C.N., and Taylor, H.E., 2000,
Results, in Alpers, C.N., Taylor, H.E., and Domagalski, J.J., eds., Metals transport in the Sacramento River, California, 1996-97--Volume 1. Methods and data: U.S. Geological Survey Water-Resources Investigations Report 99-4286, p. 62-97.
Antweiler, R.C., Smith, R.L., Voytek, M.A., Böhlke, J.-K., and Dupre, D.H., 2005,
Water-quality data from two agricultural drainage basins in northwestern Indiana and northeastern Illinois--III. Biweekly data, 2000-2002: U.S. Geological Survey Open-File Report 2005-1197, 66 p.
Antweiler, R.C., Smith, R.L., Voytek, M.A., and Böhlke, J.K., 2005,
Water-quality data from two agricultural drainage basins in northwestern Indiana and northeastern Illinois--II. Diel data, 1999-2001: U.S. Geological Survey Open-File Report 2005-1053, 114 p.
Antweiler, R.C., Smith, R.L., Voytek, M.A., Böhlke, J.K., and Richards, K.D., 2005,
Water-quality data from two agricultural drainage basins in northwestern Indiana and northeastern Illinois--I. Lagrangian and synoptic data, 1999-2002: U.S. Geological Survey Open-File Report 2004-1317, 206 p.
Aulenbach, B.T., Buxton, H.T., Battaglin, W.A., and Coupe, R.H., 2007,
Streamflow and nutrient fluxes of the Mississippi-Atchafalaya River Basin and subbasins for the period of record through 2005: U.S. Geological Survey Open-File Report 2007-1080 (Available On Line Only).
Avanzino, R.J., and Kennedy, V.C., 1993,
Long-term frozen storage of streamwater samples for dissolved orthophosphate, nitrate plus nitrate, and ammonia analysis: Water Resources Research, v. 29, no. 10, p. 3357-3362.

B

Baker, N.T., Stone, W.W., Wilson, J.T., and Meyer, M.T., 2006,
Occurrence and transport of agricultural chemicals in Leary Weber Ditch Basin, Hancock County, Indiana, 2003-04: U.S. Geological Survey Scientific Investigations Report 2006-5251, 44 p.
Ball, J.W., Nordstrom, D.K., and Runkel, R.L., 2000,
Reactive and non-reactive transport modeling for Wightman Fork, Summitville Mine, Colorado--Application of the OTIS/OTEQ model to a low-flow synoptic study, in Proceedings from the Fifth International Conference on Acid Rock Drainage, Denver, Colorado, May 21-24, 2000: Littleton, Colo., Society for Mining, Metallurgy, and Exploration, v. 1 of 2, p. 125-134.
Ball, J.W., Runkel, R.L., and Nordstrom, D.K., 2005,
Questa baseline and pre-mining ground-water quality investigation. 12. Geochemical and reactive-transport modeling based on tracer injection-synoptic sampling studies for the Red river, New Mexico, 2001-2002: U.S. Geological Survey Scientific Investigations Report 2005-5149, 78 p.
Ball, J.W., Runkel, R.L., and Nordstrom, D.K., 2004,
Evaluating remedial alternatives for the Alamosa River and Wightman Fork, near Summitville Mine, Colorado--Application of a reactive transport model to low- and high-flow simulations, in Zannetti, P., ed., Environmental Sciences and Environmental Computing: The EnviroComp Institute, v. II, p. 1-54.
Ball, J.W., Runkel, R.L., and Nordstrom, D.K., 2001,
Reactive transport modeling at high-flow - Wightman Fork/Alamosa River, USA, in Cidu, R., ed., Proceedings of the Tenth International Symposium on Water - Rock Interaction, Villasimius, Italy, July 10-15, 2001: A.A. Balkema Publishers, v. 2, p. 1181-1184.
Ball, J.W., Runkel, R.L., and Nordstrom, D.K., 1999,
Transport modeling of reactive and non-reactive constituents from Summitville, Colorado--Preliminary results from the application of the OTIS/OTEQ model to the Wightman Fork/Alamosa River System, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 305-311.
Barber, L.B., II, Leenheer, J.A., Pereira, W.E., Noyes, T.I., Brown, G.K., Tabor, C.F., and Writer, J.H., 1995,
Organic contamination of the Mississippi River from municipal and industrial wastewater, in Meade, R.H., ed., Contaminants in the Mississippi River, 1987-1992: U.S. Geological Survey Circular 1133, p. 115-135.
Barber, L.B., II, Leenheer, J.A., Tabor, C.F., Brown, G.K., Noyes, T.I., and Noriega, M.C., 1995,
Organic compounds and sewage-derived compounds, in Moody, J.A., ed., Chemical data for water samples collected during four upriver cruises on the Mississippi River between New Orleans, Louisiana, and Minneapolis, Minnesota, May 1990-April 1992: U.S. Geological Survey Open-File Report 94-523, p. 211-297.
Barber, L.B., Keefe, S.H., Antweiler, R.C., Taylor, H.E., and Wass, R.D., 2006,
Accumulation of contaminants in fish from wastewater treatment wetlands: Environmental Science and Technology, v. 40, no. 2, p. 603-611, doi:10.1021/es0514287.
Barber, L.B., Murphy, S.F., Verplanck, P.L., Sandstrom, M.W., Taylor, H.E., and Furlong, E.T., 2006,
Chemical loading into surface water along a hydrological, biogeochemical, and land use gradient--A holistic watershed approach: Environmental Science and Technology, v. 40, no. 2, p. 475-486, doi:10.1021/es051270q.
Barber, L.B., and Writer, J.H., 1998,
Impact of the 1993 flood on the distribution of organic contaminants in bed sediments of the Upper Mississippi River: Environmental Science and Technology, v. 32, no. 14, p. 2077-2083, doi:10.1021/es970795i.
Battaglin, W.A., and Goolsby, D.A., 1994,
Relations between herbicide use and annual transport of herbicides in midwestern rivers, 1991-92, in Weigmann, D.L., ed., New Directions in Pesticide Research Development, Management, and Policy--Proceedings of the Fourth National Conference, on Pesticides, Richmond, Va., November 1-3, 1993: p. 711-723.
Battaglin, W.A., Goolsby, D.A., and Coupe, R., 1993,
Annual use and transport of agricultural chemicals in the Mississippi River, 1991-92, in Goolsby, D.A., Boyer, L.L., and Mallard, G.E., eds., Selected papers on agricultural chemicals in water resources of the Midcontinental United States: U.S. Geological Survey Open-File Report 93-418, p. 26-40.
Battaglin, W.A., Goolsby, D.A., and Coupe, R.H., 1996,
Annual use and transport of agricultural chemicals in the Mississippi River, 1991-92, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 429-440.
Battaglin, W.A., Goolsby, D.A., and Mueller, D.K., 1994,
Relations between use, concentration, and transport of agricultural chemicals in the Mississippi River basin, in Marston, R.A., and Hasfurther, V.R., eds., Effects of Human-induced Changes on Hydrologic System--Proceedings of the American Water Resources Association summer symposium, Jackson Hole, Wyoming, June 26-29, 1994: p. 1073-1086.
Battaglin, W.A., Kuivila, K., Winton, K., and Meyer, M., 2008,
Occurrence of chlorothalonil, its transformation products, and selected other pesticides in Texas and Oklahoma streams, 2003-2004: U.S. Geological Survey Scientific Investigations Report 2008–5016, 9 p.
Bencala, K.E., 2005,
Hyporheic exchange flows, in Anderson, M.G., and McDonnell, J.J., eds., Encyclopedia of Hydrological Sciences: New Jersey, John Wiley and Sons, v. 3, Chapter 113, p. 1733-1740.
Bencala, K.E., 2000,
Invited Commentary--Hyporheic zone hydrological processes: Hydrological Processes, v. 14, no. 15, p. 2797-2798, doi:10.1002/1099-1085(20001030)14:15<2797::AID-HYP402>3.0.CO;2-6.
Bencala, K.E., 1985,
Performance of sodium as a transport tracer experimental and simulation analysis, in Subitzky, S., ed., Selected Papers in the Hydrologic Sciences, 1985: U.S. Geological Survey Water-Supply Paper 2270, p. 83-89.
Bencala, K.E., 1984,
Interactions of solutes and streambed sediment--2. A dynamic analysis of coupled hydrologic and chemical processes that determine solute transport: Water Resources Research, v. 20, no. 12, p. 1804-1814, 4W1201, doi:10.1029/WR020i012p01804.
Bencala, K.E., 1983,
Simulation of solute transport in a mountain pool and-riffle stream with a kinetic mass transfer model for sorption: Water Resources Research, v. 19, no. 3, p. 732-738, doi:10.1029/WR019i003p00732.
Bencala, K.E., Duff, J.H., Harvey, J.W., Jackman, A.P., and Triska, F.J., 1993,
Modelling within the stream-catchment continuum, in Jakeman, A.J., Beck, M.B., and McAleer, J.J., eds., Modelling Change in Environmental Systems: Wiley, p. 163-187.
Bencala, K.E., Duff, J.H., Harvey, J.W., Jackman, J.P., and Triska, F.J., 1993,
Physical transport influencing biogeochemistry within the stream catchment continuum, in Jakeman, A.J., Beck, M.B., and McAleer, M.J., eds., Modelling change in environmental systems: New York, J. Wiley and Sons.
Bencala, K.E., Jackman, A.P., Kennedy, V.C., Avanzino, R.J., and Zellweger, G.W., 1983,
Kinetic analysis of strontium and potassium sorption onto sands and gravels in a natural channel: Water Resources Research, v. 19, no. 3, p. 725-731, doi:10.1029/WR019i003p00725.
Bencala, K.E., Kennedy, V.C., Zellweger, G.W., Jackman, A.P., and Avanzino, R.J., 1984,
Interactions of solutes and streambed sediments--1. An experimental analysis of cation and anion transport in a mountain stream: Water Resources Research, v. 20, no. 12, p. 1797-1803, 4W1200, doi:10.1029/WR020i012p01797.
Bencala, K.E., Kimball, B.A., and McKnight, D.M., 1991,
Use of variation in solute concentration to identify interactions of the substream zone with instream transport, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 377-379.
Bencala, K.E., McKnight, D.M., Zellweger, G.W., and Goad, J., 1986,
The stability of Rhodamine WT dye in trial studies of solute transport in an acidic and metal-rich stream, in Subitzky, S., ed., Selected papers in the hydrologic sciences, 1986: U.S. Geological Survey Water-Supply Paper 2310, p. 87-95.
Bencala, K.E., McKnight, D.M., Zellweger, G.W., and Kimball, B.A., 1988,
Monitoring acidic streams for transport studies, in Mallard, G.E., ed., U.S. Geological Survey Toxic Substances Hydrology Program--Surface-Water Contamination--Proceedings of the technical meeting, Denver, Colorado, February 2-4, 1987: U.S. Geological Survey Open-File Report 87-764, p. 119-124.
Bencala, K.E., and Ortiz, R.F., 1999,
Theory and(or) reality--Analysis of sulfate mass-balance at Summitville, Colorado, poses process questions about the estimation of metal loadings, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 119-122.
Bencala, K.E., Rathbun, R.E., Jackman, A.P., Kennedy, V.C., Zellweger, G.W., and Avanzino, R.J., 1983,
Rhodamine-WT dye losses in a mountain stream environment: Water Resources Bulletin, v. 19, p. 943-950.
Bencala, K.E., Triska, F.J., Kennedy, V.C., Zellweger, G.W., Duff, J.H., and Avanzino, R.J., 1989,
Exchange between stream and substream flows--Implications for pollutant transport and nutrient cycling through a forested watershed, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 610.
Bencala, K.E., and Walters, R.A., 1983,
Simulation of solute transport in a mountain pool-and-riffle stream--A transient storage model: Water Resources Research, v. 19, no. 3, p. 718-724, doi:10.1029/WR019i003p00718.
Bergamaschi, B.A., Kuivila, K.M., and Fram, M.S., 2001,
Pesticides associated with suspended sediments entering San Francisco Bay following the first major storm of water year 1996: Estuaries, v. 24, no. 3, p. 368-380.
Böhlke, J.K., O'Connell, M.E., and Prestegaard, K.L., 2007,
Ground water stratification and delivery of nitrate to an incised stream under varying flow conditions: Journal of Environmental Quality, v. 36, no. 3, p. 664-680, doi:10.2134/jeq2006.0084.
Borrok, D.M., Nimick, D.A., Wanty, R.B., and Ridley, W.I., 2008,
Isotopic variation of dissolved copper and zinc in stream waters affected by historical mining: Geochimica et Cosmochimica Acta, v. 72, no. 2, p. 329-344, doi:10.1016/j.gca.2007.11.014.
Boyer, E.W., 1994,
Hydrology and the variation of dissolved organic carbon in soil and stream waters of two headwater catchments--Summit County, Colorado: Charlottesville, University of Virginia, Master of Science Thesis, Environmental Science, 102 p.
Boyer, E.W., Hornberger, G.M., Bencala, K.E., and McKnight, D.M., 2000,
Effects of asynchronous snowmelt on flushing of dissolved organic carbon--A mixing model approach: Hydrological Processes, v. 14, no. 18, p. 3291-3308, doi:10.1002/1099-1085(20001230)14:18<3291::AID-HYP202>3.0.CO;2-2.
Boyer, E.W., Hornberger, G.M., Bencala, K.E., and McKnight, D.M., 1997,
Response characteristics of DOC flushing in an alpine catchment: Hydrological Processes, v. 11, no. 12, p. 1635-1647, doi:10.1002/(SICI)1099-1085(19971015)11:12<1635::AID-HYP494>3.0.CO;2-H.
Boyer, E.W., Hornberger, G.M., Bencala, K.E., and McKnight, D.M., 1996,
Overview of a simple model describing variation of dissolved organic carbon in an upland catchment: Ecological Modeling, v. 86, p. 183-188, doi:10.1016/0304-3800(95)00049-6.
Boyer, E.W., Hornberger, G.W., and Bencala, K.E., 1993,
Hydrological controls on the temporal variation of dissolved organic carbon in Deer Creek near Montezuma, Colorado, in McAleer, M., and Jakeman, A., eds., Proceedings of the 10th Biennial Conference of the Modeling and Simulation Society of Australia, December 6-10, 1993: The University of Western Australia, p. 501-506.
Boyer, E.W., McKnight, D.M., Bencala, K.E., Brooks, P.D., Anthony, M.W., Zellweger, G.W., and Harnish, R.E., 1999,
Streamflow and water quality characteristics for the Upper Snake River and Deer Creek Catchments in Summit County, Colorado--Water years 1980 to 1990: Institute of Arctic and Alpine Research, University of Colorado Occasional Paper 53, 81 p (+ diskett).
Bradley, P.M., Barber, L.B., Kolpin, D.W., McMahon, P.B., and Chapelle, F.H., 2008,
Potential for 4-n-nonylphenol biodegradation in stream sediments: Environmental Toxicology and Chemistry, v. 27, no. 2, p. 260-265, doi:10.1897/07-333.
Bradley, P.M., Barber, L.B., Kolpin, D.W., McMahon, P.B., and Chapelle, F.H., 2007,
Biotransformation of caffeine, cotinine, and nicotine in stream sediments--Implications for use as wastewater indicators: Environmental Toxicology and Chemistry, v. 26, no. 6, p. 1116-1121, doi:10.1897/06-483R.1.
Breault, R.F., Colman, J.A., Aiken, G.R., and McKnight, D.M., 1996,
Copper speciation and binding by organic matter in copper-contaminated streamwater: Environmental Science and Technology, v. 30, no. 12, p. 3477-3486, doi:10.1021/es9601301.
Brinton, T.I., Garbarino, J.R., Peart, D.B., Taylor, H.E., and Antweiler, R.C., 1995,
Concentration and transport data for dissolved inorganic constituents in water collected during seven cruises on the Mississippi River and some of its tributaries, July 1987 - June 1990: U.S. Geological Survey Open-File Report 94-524, 102 p.
Brooks, P.D., McKnight, D.M., and Bencala, K.E., 2001,
Annual maxima in zinc concentrations during spring snowmelt in streams impacted by mine drainage: Environmental Geology, v. 40, no. 11-12, p. 1447-1454, doi:10.1007/s002540100338.
Brooks, P.D., McKnight, D.M., and Bencala, K.E., 1999,
The relationship between soil heterotrophic activity, soil dissolved organic carbon (DOC) leachate, and catchment-scale DOC export in headwater catchments: Water Resources Research, v. 35, no. 6, p. 1895-1902, 1998WR900125, doi:10.1029/1998WR900125.
Broshears, R.E., 1996,
Reactive solute transport in acidic streams: Water, Air, and Soil Pollution, v. 90, no. 1-2, p. 195-204.
Broshears, R.E., Bencala, K.E., Kimball, B.A., and McKnight, D.M., 1992,
Tracer-dilution experiments and solute-transport simulations for a mountain streams, Saint Kevin Gulch, Colorado: U.S. Geological Survey Water-Resources Investigations Report 92-4081, 18 p.
Broshears, R.E., Kimball, B.A., and Runkel, R.L., 1996,
Simulation of reactive transport during a pH modification experiment in a mountain stream affected by acid mine drainage, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 781-788.
Broshears, R.E., Kimball, B.A., and Runkel, R.L., 1995,
Interpreting spatial profiles of concentration in acid mine drainage streams, in Hotchkiss, W.R., Downey, J.S., Gutentag, E.D., and Moore, J.E., eds., Water resources at risk, Denver, Colo.: Minneapolis, Minnesota, American Institute of Hydrology, p. LL-10-21.
Broshears, R.E., Runkel, R.L., and Kimball, B.A., 1994,
Development and application of a reactive solute transport model for trace metals in mountain streams, in Dutton, A.R., ed., Toxic Substances and the Hydrologic Sciences--Proceedings of the conference, Austin, Texas, April 10-13, 1994: Minneapolis, Minn., American Institute of Hydrology, p. 19-34.
Broshears, R.E., Runkel, R.L., Kimball, B.A., Bencala, K.E., and McKnight, D.M., 1996,
Reactive solute transport in an acidic stream--Experimental pH increase and simulation of controls on pH, aluminum, and iron: Environmental Science and Technology, v. 30, no. 10, p. 3016-24, doi:10.1021/es960055u.
Brown, D.W., and Hem, J.D., 1984,
Development of a model to predict the adsorption of lead from solution on a natural streambed sediment: U.S. Geological Survey Water-Supply Paper 2187, 35 p.
Buszka, P.M., Barber, L.B., II, Schroeder, M.P., and Becker, L.D., 1994,
Determination of organic compounds downstream from a treated-wastewater discharge near Dallas, Texas, March 1987: U.S. Geological Survey Water-Resources Investigations Report 93-4194, 19 p.

C

Cain, D.J., Buchwalter, D.B., and Luoma, S.N., 2006,
Influence of metal exposure history on the bioaccumulation and subcellular distribution of aqueous cadmium in the insect Hydropsyche californica: Environmental Toxicology and Chemistry, v. 25, no. 4, p. 1042-1049, doi:10.1897/05-255R.1.
Cain, D.J., Carter, J.L., Fend, S.V., Luoma, S.N., Alpers, C.N., and Taylor, H.E., 2000,
Metal exposure to a benthic invertebrate, Hydropsyche californica, in the Sacramento River downstream of Keswick Reservoir, California: Canadian Journal of Fisheries, v. 57, p. 380-390.
Callender, E., and Robbins, J.A., 1993,
Transport and accumulation of radionuclides and stable elements in a Missouri River reservoir: Water Resources Research, v. 29, no. 6, p. 1787-1804, 93WR00387, doi:10.1029/93WR00387.
Chapin, T.P., Nimick, D.A., Gammons, C.H., and Wanty, R.B., 2007,
Diel cycling of zinc in a stream impacted by acid rock drainage--Initial results from a new in situ Zn analyzer: Environmental Monitoring and Assessment, v. 133, no. 1-3, p. 161-167, doi:10.1007/s10661-006-9569-y.
Chapra, S.C., and Runkel, R.L., 1999,
Modeling impact of storage zones on stream dissolved oxygen: Journal of Environmental Engineering, v. 125, no. 5, p. 415-419.
Cheng, R.T., Gartner, J.W., Cacchione, D.A., and Tate, G.B., 1998,
Flow and suspended particulate transport in a tidal boundary layer, South San Francisco Bay, California, in Dronkers, J., and Scheffers, M., eds., Physics of Estuaries and Coastal Seas: Rotterdam, Balkema, p. 3-12.
Choi, J., Harvey, J.W., and Conklin, M.H., 2000,
Characterizing multiple timescales of stream and storage zone interaction that affect solute fate and transport in streams: Water Resources Research, v. 36, no. 6, p. 1511-1518, 2000WR900051, doi:10.1029/2000WR900051.
Church, S.E., Kimball, B.A., Fey, D.L., Ferderer, D.A., Yager, T.J., and Vaughn, R.B., 1997,
Source, transport, and partitioning of metals between water, colloids, and bed sediments of the Animas River, Colorado: U.S. Geological Survey Open-File Report 97-151, 1-135 p.
Church, S.E., Owen, J.R., von Guerard, P., Verplanck, P.L., Kimball, B.A., and Yager, D.B., 2007,
The effects of acidic mine drainage from historical mines in the Animas River watershed, San Juan County, Colorado--What is being done and what can be done to improve water quality?, in DeGraff, J.V., ed., Understanding and responding to hazardous substances at mine sites in the western United States: Boulder, Colo., Geological Society of America, p. 47-83, ISBN:9780813741178.
Clark, G.M., and Goolsby, D.A., 1999,
Occurrence and transport of acetochlor in streams of the Mississippi River Basin: Journal of Environmental Quality, v. 28, no. 6, p. 1787-1795.
Constantz, J., Cox, M.H., Sarma, L., and Mendez, G., 2003,
The Santa Clara River--The last natural river of Los Angeles, in Stonestrom, D.A., and Constantz, J., eds., Heat as a tool for studying the movement of ground water near streams: U.S. Geological Survey Circular 1260, p. 21-27.
Constantz, J., Cox, M.H., and Su, G.W., 2003,
Comparison of heat and bromide as ground-water tracers near streams: Ground Water, v. 41, no. 5, p. 647-656, doi:10.1111/j.1745-6584.2003.tb02403.x.
Constantz, J., Jasperse, J., Seymour, D., and Su, G.W., 2003,
Heat tracing in the streambed along the Russian River of northern California, in Stonestrom, D.A., and Constantz, J., eds., Heat as a tool for studying the movement of ground water near streams: U.S. Geological Survey Circular 1260, p. 17-20.
Constantz, J., and Stonestrom, D.A., 2003,
Heat as a tracer of water movement near streams, in Stonestrom, D.A., and Constantz, J., eds., Heat as a tool for studying the movement of ground water near streams: U.S. Geological Survey Circular 1260, p. 1-6.
Cox, M.H., and Hatch, C., 2003,
Water temperature, streamflow, and ground-water elevation in and adjacent to the Russian River between Hopland and Guerneville, CA from 1998-2002: U.S. Geological Survey Open-File Report 2003-454, 39 p.
Cox, M.H., Mendez, G.O., Kratzer, C.R., and Reichard, E.G., 2003,
Evaluation of tracer tests completed in 1999 and 2000 on the upper Santa Clara River, Los Angeles and Ventura Counties, California: U.S. Geological Survey Water-Resources Investigations Report 2003-4277, 99 p.
Cromwell, A.E., and Thurman, E.M., 1996,
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Occurrence of alachlor and its sulfonated metabolite in rivers and reservoirs of the midwestern U.S.--The importance of sulfonation in the transport of chloroacetanilide herbicides: Environmental Science and Technology, v. 30, no. 2, p. 569-574, doi:10.1021/es950341q.
Thurman, E.M., Meyer, M.T., Mills, M.S., Zimmerman, L.R., Perry, C.A., and Goolsby, D.A., 1994,
Formation and transport of deethylatrazine and deisopropylatrazine in surface water: Environmental Science and Technology, v. 28, no. 13, p. 2267-2277, doi:10.1021/es00062a010.
Thurman, E.M., Mills, M.S., and Meyer, M.T., 1996,
Chemistry, degradation, and transport of triazine herbicide metabolites in surface water, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 455-462.
Triska, F.J., 2006,
Biogeochemical processes in river systems--Part 1--Key biochemical processes in river systems, in Shiklomanov, I.A., ed., Encyclopedia of Water Sciences, Engineering and Technology Resources, in Encyclopedia of Life Support Systems: EOLSS Publishers Ltd.
Triska, F.J., and Duff, J.H., 1997,
Sediment associated nitrification and denitrification potentials at the interface between a bankside ground water seep and the channel of the Shingobee River, in Winter, T.C., ed., Interdisciplinary research initiative--Hydrological and biogeochemical research in the Shingobee River headwaters area, north-central Minnesota: U.S. Geological Survey Water-Resources Investigations Report 96-4215, p. 155-160.
Triska, F.J., Duff, J.H., and Avanzino, R.J., 1993,
Patterns of hydrological exchange and nutrient transformation in the hyporheic zone of a gravel bottom stream--Examining terrestrial aquatic linkages: Freshwater Biology, v. 29, p. 259-274.
Triska, F.J., Duff, J.H., and Avanzino, R.J., 1993,
The role of water exchange between a stream channel and its hyporheic zone in nitrogen cycling at the terrestrial-aquatic interface: Hydrobiologia, v. 251, p. 167-184.
Triska, F.J., Duff, J.H., Avanzino, R.J., and Jackman, A.P., 1997,
Physical and chemical properties at the interface between a bank-side ground water seep and the channel of the Shingobee River, in Winter, T.C., ed., Interdisciplinary Research Initiative--Hydrological and biogeochemical research in the Shingobee River headquarters area, north-central Minnesota: U.S. Geological Survey Water-Resources Investigations Report 96-4215, p. 149-154.
Triska, F.J., Duff, J.H., Warren, E., Godsy, E.M., Jackman, A.P., and Avanzino, R.J., 2006,
High and low flow nitrate distribution and its implications for nitrate retention in Navigation Pool 8, Upper Mississippi River (UMR), and in a high nitrate tributary, the Root River, USA, in Jones, J., ed., XXIX Congress of the International Association of Theoretical and Applied Limnology, Lahti, Finland, August 8-14, 2004: Verhandlungen Internationale Vereinigung für Theoretische und Angewandte Limnologie, v. 29, no. 4, p. 1,729-1,735, ISBN:978-3-510-54068-6.
Triska, F.J., Jackman, A.P., Duff, J.H., and Avanzino, R.J., 2000,
Subchannel dispersion and velocity beneath a relict beaver dam, Shingobee River, Minnesota, USA--Implications for nutrient cycling: Internationale Vereinigung fur Theoretische und Angewandte Limnologie, v. 27, p. 463-467.
Triska, F.J., Jackman, A.P., Duff, J.H., and Avanzino, R.J., 1994,
Ammonium sorption to channel and riparian sediments--A transient storage pool for dissolved inorganic nitrogen: Biogeochemistry, v. 26, p. 67-83.
Triska, F.J., Kennedy, V.C., Avanzino, R.J., and Stanley, K.C., 1995,
Long-term effects of clearcutting and short-term impacts of storms on inorganic nitrogen uptake and regeneration in a small stream at summer base flow, in Nolan, K.M., Kelsey, H.M., and Marron, D.C., eds., Geomorphic processes and aquatic habitat in the Redwood Creek Basin, northwestern California: U.S. Geological Survey Professional Paper 1454, p. V1-V13.
Triska, F.J., Pringle, C.M., Zellweger, G.W., Duff, J.H., and Avanzino, R.J., 1993,
Dissolved inorganic nitrogen composition, transformation, retention, and transport in naturally phosphate-rich and phosphate-poor tropical streams: Canadian Journal of Fisheries and Aquatic Sciences, v. 50, p. 665-675.

V

Van Metre, P.C., Callender, E., and Fuller, C.C., 1997,
Historical trends in organochloride compounds in river basins identified using sediment cores from reservoirs: Environmental Science and Technology, v. 31, no. 8, p. 2339-2344, doi:10.1021/es960943p.
Van Metre, P.C., Horowitz, A.J., Mahler, B.J., Foreman, W.T., Fuller, C.C., Burkhardt, M.R., Elrick, K.A., Furlong, E.T., Skrobialowski, S.C., Smith, J.J., Wilson, J.T., and Zaugg, S.D., 2006,
Effects of Hurricanes Katrina and Rita on the chemistry of bottom sediments in Lake Pontchartrain, Louisiana, USA: Environmental Science and Technology, v. 40, no. 22, p. 6894-6902, doi:10.1021/es060933g.
Van Metre, P.C., Wilson, J.T., Callender, E., and Fuller, C., 1998,
Similar rates of decrease of persistent, hydrophobic contaminants in riverine systems: Environmental Science and Technology, v. 32, p. 3312-3317, doi:10.1021/es9801902.
Van Metre, P.C., Wilson, J.T., Horowitz, A.J., Skrobialowski, S.C., Foreman, W.T., Fuller, C.C., Burkhardt, M.R., Elrick, K.A., Mahler, B.J., Smith, J.J., and Zaugg, S.D., 2007,
Chemical constituents in sediment in Lake Pontchartrain and in street mud and canal sediment in New Orleans, Louisiana, following Hurricanes Katrina and Rita, 2005: U.S. Geological Survey Data Series 206, 159 p.
Verplanck, P.L., Nordstrom, D.K., and McCleskey, R.B., 2005,
Questa baseline and pre-mining ground-water quality investigation. 20. Water chemistry trends of the Red River, Taos County, New Mexico, with data from selected seeps, tributaries, and snow, 2000-2004: U.S. Geological Survey Scientific Investigations Report 2006-5028.
Verplanck, P.L., Taylor, H.E., Nordstrom, D.K., and Barber, L.B., 2005,
Aqueous stability of gadolinium in surface waters receiving sewage treatment plant effluent, Boulder Creek, Colorado: Environmental Science and Technology, v. 39, no. 18, p. 6923-6929, doi:10.1021/es048456u.
Verstraeten, I., Meyer, M.T., Skopp, J., Speth, T., Obrist, J.G., and Vogel, J.R., 2003,
Sources, temporal variations, and fate and transport of selected endocrine disruption compounds and pharmaceuticals, Nebraska, USA, in Proceedings of the 3rd International Conference on Pharmaceuticals and Endocrine Disrupting Chemicals in Water, Minneapolis, Minnesota, March 19-21, 2003: National Ground Water Association, p. 292, CD-ROM.

W

Wagner, B.J., and Harvey, J.W., 1999,
Evaluating the ability of tracer tests to quantify reactive solute transport in stream-aquifer systems, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 201-209.
Wagner, B.J., and Harvey, J.W., 1996,
Solute-transport parameter estimation for an injection experiment at Pinal Creek, Arizona, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 1081-1087.
Walton-Day, K., Flynn, J.L., Kimball, B.A., and Runkel, R.L., 2005,
Mass loading of selected major and trace elements in Lake Fork Creek near Leadville, Colorado, September-October 2001: U.S. Geological Survey Scientific Investigations Report 2005-5151, 46 p.
Walton-Day, K., Healy, R.W., and Smith, B., 2006,
Assessment of remediation of fluvial tailings deposits in the upper Arkansas River Basin, Lake County, Colorado: U.S. Geological Survey Administrative Report, 97 p.
Walton-Day, K., Kimball, B.A., and Runkel, R.L., 2002,
The use of mass-loading studies and solute transport modeling to assist in the development of TMDL's for streams affected by mine drainage, in Workshop Notebook, Colorado Department of Health and Environment, 10th National Nonpoint Source Monitoring Workshop, Breckenridge, Colorado, September 8-12, 2002, 5 p.
Walton-Day, K., Ortiz, R.F., and von Guerard, P.B., 1995,
Water-transport--A powerful way to move metals, in King, T.V.V., ed., Environmental considerations of active and abandoned mine lands--Lessons from Summitville: U.S. Geological Survey Bulletin 2220, p. 20-23.
Walton-Day, K., Runkel, R.L., Kimball, B.A., and Bencala, K.E., 2000,
Application of the solute-transport models OTIS and OTEQ and implications for remediation in a watershed affected by acid mine drainage, Cement Creek, Animas River basin, Colorado, in Proceedings from the Fifth International Conference on Acid Rock Drainage, Denver, Colorado, May 21-24, 2000: Littleton, Colo., Society for Mining, Metallurgy, and Exploration, p. 389-399.
Walton-Day, K., Runkel, R.L., Kimball, B.A., and Bencala, K.E., 1999,
Application of the solute-transport models OTIS and OTEQ and implications for remediation in a watershed affected by acid mine drainage, Cement Creek, Animas River Basin, Colorado, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 37-46.
Walvoord, M.A., and Striegl, R.G., 2007,
Increased groundwater to stream discharge from permafrost thawing in the Yukon River basin--Potential impacts on lateral export of carbon and nitrogen: Geophysical Research Letters, v. 34, no. 12, L12402, doi:10.1029/2007GL030216.
Wankel, S.D., Kendall, C., Francis, C.A., and Paytan, A., 2006,
Nitrogen sources and cycling in the San Francisco Bay estuary--A nitrate dual isotopic composition approach: Limnology and Oceanography, v. 51, no. 4, p. 1654-1664 (Abstract).
Wanty, R.B., Verplanck, P.L., Tuttle, M., Runkel, R.L., Berger, B.R., and Kimball, B.A., 2004,
Resolving natural and anthropogenic sources of solutes to a watershed from historic mining, in Wanty, R.B., and Seal III, R.R., eds., Proceedings of the Eleventh International Symposium of Water-Rock Interaction WRI-II, Saratoga Springs, New York, June 27-July 2, 2004: A.A. Balkema, p. 1659-1663.
Warren, E., Godsy, E.M., Duff, J.H., Triska, F.J., and Jackman, A.P., 2006,
Nitrate reduction and microbial numbers in upper Mississippi River sediments, Pool 8, La Crosse, Wisconsin, USA: Verhandlungen Internationale Vereinigung fur Theoretische und Angewandte Limnologie, v. 29, p. 1578-1582.
Webster, J.G., Nordstrom, D.K., and Smith, K.S., 1994,
Transport and natural attenuation of Cu, Zn, As, and Fe in the acid mine drainage of Leviathan and Bryant Creeks, in Alpers, C.N., and Blowes, D.W., eds., Environmental geochemistry of sulfide oxidation: Washington, D.C., American Chemical Society Symposium Series 550, p. 244-260.
Wentz, D.A., Bonn, B.A., Carpenter, K.D., Hinkle, S.R., Janet, M.L., Rinella, F.A., Uhrich, M.A., Waite, L.R., Laenen, A., and Bencala, K.E., 1998,
Water quality in the Willamette Basin, Oregon, 1991-95: U.S. Geological Survey Circular 1161, 34 p.
Witkowski, P.J., Smith, J.A., Fusillo, T.V., and Chiou, C.T., 1987,
A review of surface-water sediment fractions and their interactions with persistent manmade organic compounds: U.S. Geological Survey Circular 993, 39 p.
Wright, W.G., Kimball, B.A., and Runkel, R.L., 2007,
Effects of the May Day Mine site on stream-water quality in the Cement Creek Basin, August 2000, in Church, S.E., von Guerard, P., and Finger, S.E., eds., Integrated Investigations of Environmental Effects of Historical Mining in the Animas River Watershed, San Juan County, Colorado: U.S. Geological Survey Professional Paper 1651, v. 2, p. 943-972.
Writer, J.H., 1992,
Sewage contamination in the Upper Mississippi River as measured by the fecal sterol coprostanol: Boulder, University of Colorado, Master's Thesis, 99 p.
Writer, J.H., Leenheer, J.A., Barber, L.B., Amy, G.L., and Chapra, S.C., 1995,
Sewage contamination in the Upper Mississippi River as measured by the fecal sterol, coprostanol: Water Research, v. 29, no. 6, p. 1427-1436, doi:10.1016/0043-1354(94)00304-P.

Z

Zellweger, G.W., Bencala, K.E., Kimball, B.A., and McKnight, D.M., 1989,
Evaluation of lithium, sodium, chloride, and sulfate as tracers to investigate hydrologic aspects of acidic, metal-rich streams, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 609.
Zellweger, G.W., Bencala, K.E., McKnight, D.M., Hirsch, R.M., and Kimball, B.A., 1988,
Practical aspects of tracer experiments in acidic, metal enriched streams, in Mallard, G.E., ed., U.S. Geological Survey Toxic Substances Hydrology Program--Surface-Water Contamination--Proceedings of the technical meeting, Denver, Colorado, February 2-4, 1987: U.S. Geological Survey Open-File Report 87-764, p. 125-130.

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