Buffington, M.L., Scheffer, S.J. 2008. North American species of Agrostocynips Diaz (Hymenoptera: Figitidae), parasitoids of Agromyzidae (Diptera): bionomics and taxonomy. Zootaxa. 1817:39-48.
Rung, A., Scheffer, S.J., Evans, G., Miller, D. 2008. Molecular identification of two closely related species of mealybugs of the genus Planococcus (Pseudococcidae). Annuals of the Entomological Society of America. 101(3):525-532.
Scheffer, S.J., Winkler, I.S. 2008. The first confirmed record of the leafminer Phytomyza rufipes (Diptera: Agromyzidae) in the United States. Proceedings of the Entomological Society of Washington. 110:674-678.
Scheffer, S.J., Condon, M., Bann, D., Flaherty, K., Gammons, J., Johnson, J., Marsteller, S., Lewis, M.L., Adams, D.C. 2008. Uncovering tropical diversity: six sympatric cryptic species of Blepharoneura (Diptera: Tephritidae) in flowers of Gurania spinulosa (Cucurbitaceae) in eastern Ecuador. Biological Journal of the Linnean Society, London. 93:779-797.
Scheffer, S.J., Fayed, S., Manchester, C., Lambkin, C., La Salle, J., Yeates, D.K. 2008. Plant hosts and parasitoid associations of leaf mining flies (Diptera: Agromyzidae) in the Canberra region of Australia. Australian Journal of Entomology. 47:13-19.
Scheffer, S.J., Winkler, I.S., Wiegmann, B.M. 2007. Phylogenetic relationships within the leaf-mining flies(diptera: agromyzidae)inferred from sequence data from multiple genes. Molecular Phylogenetics and Evolution. 42:756-775.
Scheffer, S.J., Lewis, M.L. 2006. Mitochondrial phylogeography of the vegetable pest liriomyza trifolii (diptera: agromyzidae): diverged clades and invasive populations. Annuals of the Entomological Society of America. 99:991-998.
Scheffer, S.J., Lewis, M.L., Joshi, R.C. 2006. DNA Barcoding Applied to Invasive Leafminers (Diptera: Agromyzidae) in the Philippines. Annals of the Entomological Society of America. 99:204-210.
Scheffer, S.J. Molecular evidence of cryptic species within polyphagous liriomyza leafminers. Meeting Abstract. 1:11/14/2004:Salt Lake City, ESA, Symposium.
Giblin-Davis, R.M., Center, B.J., Davies, K.A., Purcell, M.F., Scheffer, S.J., Taylor, G.S., Goolsby, J., Center, T.D. Histological comparisons of fergusobia/fergusonina-induced galls on different myrtaceous hosts.. Journal of Nematology. 2004:36:249-262.
Scheffer, S.J., Lewis, M.L. 2004. Phylogeography of the liriomyza trifolii - l. sativae leafminer complex (diptera: agromyzidae): cryptic species, host races, and invasive populations. Annals of the Entomological Society of America 98:181-186
Scheffer, S.J., Giblin-Davis, R.M., Davies, K.A., Taylor, G.S., Purcell, M., Lewis, M.L., Goolsby, J., Center, T.D. 2004. Phylogenetic relationships, species limits, and host specificity of gall-forming fergusonina flies (diptera: fergusoninidae) feeding on melaleuca (myrtaceae). Annals of the Entomological Society of America.97:1216-1221
Gaimari, S.D., Adler, L.S., Scheffer, S.J. 2004. Plant host affiliation and redescription of phytomyza subtenella frost (diptera: agromyzidae). Proceedings of the Entomological Society of Washington. 106: 501-507