NCI_CGAP_Ov32

Library Description

Organism:	Homo sapiens
Sex:	female
Organ:	ovary
Tissue:	papillary serous carcinoma
Vector:	pAMP1
Vector type:	plasmid (ampicillin resistant)
Lab host:	DH10B

mRNA made from ovarian carcinoma, cDNA made by oligo-dT priming. Non-directionally cloned. Size-selected on agarose gel, average insert size 500 bp. Non-amplified library.

Source: Robert Strausberg, Ph.D.

Gene Content Analysis

902 ESTs from this library were grouped into 462 UniGene entries (putative genes) [UniGene build #215, 17-Aug-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs	TPM	UniGene Entry
29	32151	Hs.499484	Similar to ribosomal protein S19.
24	26608	Hs.661894	Similar to S19 ribosomal protein.
17	18847	Hs.666913	Transcribed locus.
17	18847	Hs.593218	Transcribed locus.
17	18847	Hs.494614	BAT2 domain containing 1.
16	17738	Hs.603800	Transcribed locus.
15	16630	Hs.567699	Transcribed locus, strongly similar to NP_003964.3 ribosomal protein L14 [Homo sapiens].
15	16630	Hs.484188	ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1.
15	16630	Hs.446522	Ribosomal protein L14.
14	15521	Hs.158688	Eukaryotic translation initiation factor 5B.
10	11086	Hs.554762	Ribosomal protein L22.
10	11086	Hs.432400	Transcribed locus.
9	9978	Hs.667725	Transcribed locus.
8	8869	Hs.584762	Transcribed locus.
8	8869	Hs.459106	Antizyme inhibitor 1.
8	8869	Hs.387208	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed.
8	8869	Hs.314359	Eukaryotic translation initiation factor 3, subunit K.
7	7761	Hs.714892	Transcribed locus.
7	7761	Hs.667784	Transcribed locus.
7	7761	Hs.667744	Transcribed locus.
7	7761	Hs.667740	Transcribed locus.
7	7761	Hs.592114	Transcribed locus, strongly similar to XP_001724280.1 PREDICTED: hypothetical protein [Homo sapiens].
7	7761	Hs.485158	SAM pointed domain containing ets transcription factor.
7	7761	Hs.217079	Transcribed locus.
6	6652	Hs.667787	Transcribed locus.
6	6652	Hs.667749	Transcribed locus.
6	6652	Hs.667739	Transcribed locus.
6	6652	Hs.666898	Transcribed locus.
6	6652	Hs.659928	Transcribed locus.
6	6652	Hs.6314	Seizure related 6 homolog (mouse)-like 2.
6	6652	Hs.603759	Transcribed locus, weakly similar to XP_859587.1 PREDICTED: similar to oxidation resistance 1 isoform 2 [Canis familiaris].
6	6652	Hs.432394	Transcribed locus.
6	6652	Hs.193832	G patch domain containing 4.
5	5543	Hs.648871	CDNA FLJ41644 fis, clone FEBRA2009362.
5	5543	Hs.546288	Ribosomal protein S9.
5	5543	Hs.521056	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2.
5	5543	Hs.514220	Granulin.
5	5543	Hs.438429	Ribosomal protein S19.
5	5543	Hs.213061	Nuclear casein kinase and cyclin-dependent kinase substrate 1.
5	5543	Hs.149809	Transcribed locus.
5	5543	Hs.111903	Fc fragment of IgG, receptor, transporter, alpha.
4	4435	Hs.711628	Transcribed locus.
4	4435	Hs.695057	Transcribed locus.
4	4435	Hs.667785	Transcribed locus.
4	4435	Hs.667743	Transcribed locus.
4	4435	Hs.666920	Transcribed locus.
4	4435	Hs.660816	Transcribed locus.
4	4435	Hs.624160	Transcribed locus.
4	4435	Hs.624137	Transcribed locus.
4	4435	Hs.611266	Transcribed locus.
4	4435	Hs.591610	Oligonucleotide/oligosaccharide-binding fold containing 2A.
4	4435	Hs.380953	Ribosomal protein L38.
4	4435	Hs.355264	Cytochrome b-561.
3	3326	Hs.666908	Transcribed locus.
3	3326	Hs.666890	Transcribed locus.
3	3326	Hs.655168	Sideroflexin 4.
3	3326	Hs.611147	Transcribed locus.
3	3326	Hs.602955	Transcribed locus.
3	3326	Hs.560297	Transcribed locus.
3	3326	Hs.437277	Sequestosome 1.
3	3326	Hs.424312	PDZ and LIM domain 4.
3	3326	Hs.375217	Ring finger protein 31.
3	3326	Hs.186350	Ribosomal protein L4.
2	2217	Hs.75275	Ubiquitination factor E4A (UFD2 homolog, yeast).
2	2217	Hs.713706	Ferritin, light polypeptide.
2	2217	Hs.709126	Transcribed locus.
2	2217	Hs.708514	CDNA: FLJ23242 fis, clone COL01514.
2	2217	Hs.708179	Transcribed locus.
2	2217	Hs.694083	Transcribed locus.
2	2217	Hs.687824	Transcribed locus.
2	2217	Hs.687819	Transcribed locus.
2	2217	Hs.669724	Transcribed locus, strongly similar to NP_001100759.1 LSM5 homolog, U6 small nuclear RNA associated [Rattus norvegicus].
2	2217	Hs.667751	Transcribed locus.
2	2217	Hs.667737	Transcribed locus.
2	2217	Hs.667300	Transcribed locus.
2	2217	Hs.666919	Transcribed locus.
2	2217	Hs.666899	Transcribed locus.
2	2217	Hs.666892	Transcribed locus.
2	2217	Hs.666891	Transcribed locus.
2	2217	Hs.656346	Transcribed locus.
2	2217	Hs.643483	Calmodulin 2 (phosphorylase kinase, delta).
2	2217	Hs.632267	Syndecan 4.
2	2217	Hs.624359	Transcribed locus.
2	2217	Hs.624357	Transcribed locus.
2	2217	Hs.624197	Transcribed locus.
2	2217	Hs.624144	Transcribed locus.
2	2217	Hs.603776	Transcribed locus.
2	2217	Hs.602979	Transcribed locus.
2	2217	Hs.584921	Ceroid-lipofuscinosis, neuronal 6, late infantile, variant.
2	2217	Hs.559654	Transcribed locus.
2	2217	Hs.559598	Transcribed locus.
2	2217	Hs.549742	Transcribed locus.
2	2217	Hs.546286	Ribosomal protein S3.
2	2217	Hs.520665	Transcribed locus.
2	2217	Hs.519672	Treacher Collins-Franceschetti syndrome 1.
2	2217	Hs.507783	NHL repeat containing 3.
2	2217	Hs.476930	Chromatin modifying protein 2B.
2	2217	Hs.464585	Ankyrin repeat domain 12.
2	2217	Hs.436687	SET nuclear oncogene.
2	2217	Hs.435743	Transcribed locus.