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Vol. 9, No. 7
July 2003

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Research

Molecular Epidemiology of O139 Vibrio cholerae: Mutation, Lateral Gene Transfer, and Founder Flush

Pallavi Garg,*† Antonia Aydanian,‡ David Smith,‡ J. Glenn Morris, Jr.,‡ G. Balakrish Nair,*† and O. Colin Stine‡
*National Institute of Cholera and Enteric Diseases, Calcutta, India; †International Centre for Diarrheal Diseases Research, Dacca, Bangladesh; and ‡University of Maryland School of Medicine, Baltimore, Maryland, USA

Appendix (online only)

Sample number, year of collection, allele at each of nine loci, and sequence type (ST) for each isolate of Vibrio cholerae O139a

Isolate

Y

dnaE

lap

rstR

gmd

recA

pgm

gyr

chi

ST

SG20

1992

1

1

1

1

1

1

1

1

1

SG18

1992

1

i

1

1

1

1

1

1

1

SG22

1992

1

1

1

1

1

1

1

i

1

SG16

1992

1

1

1

1

1

1

i

i

1

SG25

1992

1

1

1

1

1

1

i

i

1

SG19

1992

1

2

1

1

1

1

1

1

3

SG21

1992

1

2

1

1

1

1

i

i

3

SG17

1992

1

3

1

1

1

1

1

1

8

SG24

1992

1

1

11

i

1

1

1

1

33

CO0006

1993

1

i

1

1

1

1

1

1

1

CO0285

1993

1

1

i

1

1

1

1

1

1

CO0024

1993

1

1

1

1

1

1

1

i

1

CO0005

1993

i

i

1

1

1

1

1

1

13

CO0009

1993

i

1

1

i

1

i

1

1

17

CO0046

1993

1

i

8

1

1

1

1

1

26

CO0054

1993

1

10

1

1

1

1

1

1

32

CO0318

1993

1

1

7

1

1

1

1

5

37

CO0292

1993

1

11

6

1

1

1

1

1

41

CO0480

1994

1

1

1

1

1

1

1

1

1

CO0504

1994

1

1

1

1

1

1

1

1

1

CO0508

1994

1

1

1

1

1

1

1

1

1

CO0700

1994

1

i

1

1

1

1

1

1

1

CO0788

1994

1

1

i

1

1

1

1

1

1

CO0771

1994

1

1

7

1

1

1

1

1

20

CO0444

1994

1

1

7

i

1

1

1

1

20

CO0529

1994

1

1

1

7

1

1

1

1

21

CO0481

1994

1

1

i

10

1

1

1

i

31

CO0575

1994

1

1

9

1

1

1

3

1

35

CO0716

1994

5

1

1

1

1

7

1

1

36

CO0698

1994

6

i

8

1

1

1

1

1

38

CO0904

1995

1

i

1

1

1

1

1

1

1

CO0866

1995

1

1

i

1

1

1

1

1

1

CO1093

1995

1

1

1

1

1

1

1

i

1

CO1072

1995

1

1

2

1

1

1

1

1

2

AM064

1995

1

1

2

1

1

1

1

1

6

AM028

1995

1

1

i

1

1

4

1

1

12

CO0842

1995

1

9

i

9

1

1

1

1

42

CO1003

1995

1

12

7

1

1

1

1

1

44

AM011

1995

1

19

2

1

1

1

1

1

48

AS011

1995

2

16

1

6

1

1

1

1

50

AM228

1996

1

1

1

1

1

1

1

1

1

AM229

1996

1

1

1

1

1

1

1

1

1

AS192

1996

1

1

1

1

1

1

1

1

1

AS199

1996

1

1

1

1

1

1

1

1

1

AS224

1996

i

1

1

i

1

1

1

1

1

AM220

1996

1

1

2

i

1

1

1

1

2

AS212

1996

1

1

3

1

1

1

1

1

4

AM254

1996

4

i

1

1

1

1

1

1

9

AM216

1996

1

1

2

2

1

1

1

2

11

AS239

1996

1

1

1

3

1

1

1

3

14

AM233

1996

1

1

1

1

1

8

1

1

28

AS248

1996

1

18

1

1

1

1

1

1

45

AS238

1996

1

14

1

4

1

1

1

1

46

AM282

1997

1

1

1

1

1

1

1

1

1

AM355

1997

1

1

1

1

1

1

1

1

1

AS440

1997

1

1

1

1

1

1

1

1

1

AS514

1997

i

1

1

1

1

1

1

1

1

AS622

1997

i

1

1

1

1

1

1

1

1

AS365

1997

1

1

2

1

1

1

1

1

2

AS616

1997

1

1

1

6

1

1

2

1

22

AS468

1997

1

13

1

1

1

1

1

1

40

AS377

1997

3

15

1

1

1

1

1

1

43

AS630

1997

1

17

4

1

1

1

1

1

47

AM263

1997

1

20

1

1

1

1

1

1

49

PG138

1998

1

1

1

1

1

1

1

1

1

PG235

1998

1

1

1

1

1

1

1

1

1

PG340

1998

1

1

1

1

1

1

1

1

1

PG352

1998

1

1

1

1

1

1

1

1

1

PL182

1998

1

1

1

1

1

1

1

1

1

PG175

1998

1

1

1

1

1

3

1

1

7

PL003

1998

1

1

1

1

1

4

1

1

12

PG064

1998

1

1

1

6

1

1

1

1

16

PG178

1998

1

1

1

6

1

2

1

1

23

PG030

1998

1

1

1

1

1

1

1

1

24

PG279

1998

9

i

1

1

1

1

1

1

30

PG266

1998

1

1

1

11

1

i

1

1

34

NAC190

1999

1

1

1

1

1

1

1

1

1

NAC203

1999

1

1

1

1

1

1

1

1

1

NAC241

1999

1

1

1

1

1

1

1

1

1

NLC20

1999

1

1

1

1

1

1

1

1

1

NLC33

1999

1

1

1

1

1

1

1

1

1

NLC44

1999

1

1

1

1

1

1

1

1

1

NLC39

1999

1

1

1

i

1

1

1

1

1

NAC11

1999

i

1

1

1

1

1

1

1

1

NAC153

1999

1

1

1

3

1

1

1

1

5

NAC171

1999

i

1

1

6

1

1

1

1

16

NLC21

1999

i

i

1

1

1

6

1

1

18

NLC64

1999

8

4

1

5

1

1

1

1

39

CRC165

2000

1

1

1

1

1

1

1

1

1

CRC018

2000

1

1

2

2

1

2

1

1

10

CRC147

2000

1

1

1

i

1

1

1

5

15

CRC116

2000

1

6

1

1

1

1

i

1

19

CRC106

2000

i

7

1

i

1

1

1

1

25

CRC150

2000

1

1

1

8

1

1

1

1

27

CRC102

2000

1

8

1

1

1

1

1

1

29

CRC005

2000

7

5

10

i

2

5

4

4

51
ai, inferred ancestral allele, 1.
   
     
   
Comments to the Authors

Please use the form below to submit correspondence to the authors or contact them at the following address:

O. Colin Stine, Department of Epidemiology and Preventive Medicine, University of Maryland School of Medicine, Baltimore, MD 21201, USA; fax: 410-706-1644; email: ostin001@umaryland.edu

Return Email address optional:


 

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