Rat Genome Resources
The laboratory rat is an indispensable tool in experimental medicine and drug development due to an extensive knowledge of rat physiology and availability of many disease models. Rat is used extensively as a model organism for studying human normal and disease processes and for testing drug efficacy and toxicity prior to human clinical trials. This site brings together information about rat data available at NCBI and other related resources from the research community, including sequence, mapping, and clone information.
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NCBI Rat Resources
Global Query. Query all NCBI databases.
BLAST. Basic Local Alignment Search Tool.
Clone Registry. Information about specific BAC clones.
dbSNP. SNPs and other genetic variation.
e-PCR. Identify potential sequence tagged sites.
Full-Length cDNAs. Full-length sequencing projects and clones.
Gene. The focal point for genes and associated information.
GEO. A gene expression and molecular abundance repository.
Genome Project. Sequencing, assembly, and annotation projects.
HomoloGene. Eukaryotic homology groups.
Homology Map. Syntenic blocks between rat, mouse, and human.
Map Viewer. Interactive viewer for genome maps, sequence, and genes.
Popset. Sequence data from population studies.
Probe. Nucleic acid reagents for biomedical applications.
RefSeq. The non-redundant Reference Sequence collection.
SAGEmap. A Serial Analysis of Gene Expression data repository.
Splign. A tool for aligning mRNAs to genomic sequence.
Statistics. Numbers of Genes, RefSeqs, and other data types.
Taxonomy. Lineage and organism names.
Trace Archive. Raw sequence data from various sequencing projects.
UniGene. Gene-oriented clusters of transcribed sequences.
UniSTS. Mapping and marker data.
FTP Sites
dbSNP
Gene
Genomes
Map Viewer
RefSeq
UniGene
UniSTS
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Just In...
Statistics. Reports on the number of Genes, RefSeqs, and other data types currently available.
Tips on Finding cDNA Clones: NCBI offers hints on clone searching from the NIH Mammalian Gene Collection (MGC), including clones for rat.
The published rat genome (April 2004)
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Rattus norvegicus
(Photo courtesy of Martin Krzywinski)
Additional Resources
New This Month In:
CoreNucleotide
Gene
Protein
PubMed
PubMed Central
Nomenclature Authority:
RGNC
Genetics, Genomics, & Maps:
Rat Genome Database
Ratmap
VCMAP
Whitehead/MIT Genetic Maps
Sequence Resources:
BAC ends at TIGR
BAC fingerprint database
Genome Project at BCM
MGC clones
Strain and Animal Resources:
Charles River
Harlan
Natl. Bio Resource Project
PhsyGen Strain Profiles
RGD Strain Locator
RRRC
Taconic
Other Resources:
ARB Genetic Database
NIH Rat Genomics and Genetics
OLETF Project
Rat Atlas Viewer
Rat Embyro Development
TIGR Rat Gene Index
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