CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Mm. Smarca4, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Sequence ID:NM_011417

Database Links

UniGeneEntrez GeneSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A3|9 6.0

Chromosomal Position (from UCSC)

Chromosomal Position:9: 21420824 - 21447015

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30533489Full LengthBC079560SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
4218517IncompleteBC014760SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
4945540IncompleteBC023186SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
5025538IncompleteBC026672SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
5257181IncompleteBC054056SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
5345334IncompleteBC023830SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
6840009IncompleteBC060229SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
30253731IncompleteBC061214SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035547  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_011417 NP_035547 Q6AXG8 SNF2_N
Helicase_C
HSA
TCH

Related Sequences

 
mRNAGenPeptSwissProt
U53563 AAB64343 O35845
S68108 AAC60670  
BC014760 AAH14760  
BC023186 AAH23186  
BC023830 AAH23830  
BC026672 AAH26672  
BC054056 AAH54056  
BC061214 AAH61214 Q6P8K2
BC079560 AAH79560 Q6AXG8
AK051530 BAC34664  
AK141517 BAE24713 Q3URH5
AK147047 BAE27633 Q3UI73
AK147285 BAE27821 Q6AXG8
AK160825 BAE36034 Q3TUD7
AK166837 BAE39059 Q3TKT4

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smarca4 NP_035547 R.norvegicus Smarca4 171379   XP_343359 100
H.sapiens SMARCA4 6597 Gene Info NP_003063 99
A.gambiae AgaP_AGAP010462 1272575   XP_311484 62
D.melanogaster brm 39744   NP_536746 60
C.elegans psa-4 178015   NP_502082 56
A.thaliana AT5G19310 832051   NP_197432 45
S.pombe snf22 2538881   NP_588472 45
S.cerevisiae SNF2 854465   NP_014933 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.