Sequence Structure Analysis Submit Form

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Paste sequence alignment in FASTA format

Or upload a file in FASTA format

Choose output

Display hydrophobic properties---Rose scale
Display hydrophobic properties---Kyte and Doolittle scale
Display hydrophobic properties---Wolfenden scale
Display hydrophobic properties---Janin scale
Display chemical classifications of amino acid side chains

Index of all tools	ADRA
Branchlength	Codon Alignment
Consensus Maker	ELF
ElimDupes	Entropy
Epilign	FindModel
Format converter	Gap strip/squeeze
Gene Cutter	HDent/HDdist
Heatmap	Hepitope
Highlighter	HIV BLAST
HIValign	Hypermutation
jpHMM at GOBICS	Mosaic Vaccine Tool Suite
Motif Scan	N-Glycosite
ODprep/ODfit	PCOORD
PeptGen	PhyloPlace
Primalign	Protein Feature Accent
Protein structure	Recombinant HIV-1 drawing tool
RIP	SeqPublish
Sequence locator	SNAP
SUDI subtyping	SynchAlign
Translate	Treemaker
External tools

Sequence Structure Analysis Tool