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Pathogen Functional Genomics Resource Center (PFGRC)

Bioinformatics Support

(All links below are to non-Government web sites.)

The PFGRC makes its resources, technology platforms, and scientific and technical expertise available for studies for the purpose of developing bioinformatics tools of broad interest and value to the scientific community.

Open source soft ware Packages

  • APEX-QPT: A quantitative proteomics tool
  • EASE: Resources for biological role analysis of gene lists
  • F. Tularensis comparative analysis tool
  • Ginkgo: A CGH and expression microarray statistical analysis and normalization platform
  • Magnolia: A microarray data management and export system for PFGRC microarrays
  • Microarray Annotation Pipeline: Annotation files for PFGRC microarrays
  • S. pneumoniae comparative analysis tool
  • TM4: A comprehensive microarray software suite for data management and analysis
    • LEM (Linear Expression Maps): A tool for visualizing gene expression on a chromosomal coordinate map. Implemented in the MeV Application
    • NonpaR: Four nonparametric statistical test for common microarray experimental designs. Implemented in the MeV Application
  • Tutorial and Guide to Microarray Data Analysis available 6/2008


Contact Info

Maria Y. Giovanni
Assistant Director for Microbial Genomics and Advanced Technology
E-mail: mgiovanni@niaid.nih.gov

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DNA Micoarray Request Form

See Also

NIAID Genomics Initiatives (PDF)

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Contact Info

Maria Y. Giovanni
Assistant Director for Microbial Genomics and Advanced Technology
E-mail: mgiovanni@niaid.nih.gov

Highlight

DNA Micoarray Request Form

See Also

NIAID Genomics Initiatives (PDF)