CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. -, Coiled-coil-helix-coiled-coil-helix domain containing 2
Sequence ID:NM_016139

Database Links

UniGeneEntrez GeneSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 56136763 - 56141661

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2988156Full LengthBC003079coiled-coil-helix-coiled-coil-helix domain containing 2
4637353Full LengthBC015639coiled-coil-helix-coiled-coil-helix domain containing 2
4792941Full LengthBC066331coiled-coil-helix-coiled-coil-helix domain containing 2
6192342Full LengthBC100275coiled-coil-helix-coiled-coil-helix domain containing 2
6426679Full LengthBC071985coiled-coil-helix-coiled-coil-helix domain containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057223  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_016139 NP_057223 Q9Y6H1 CHCH

Related Sequences

 
mRNAGenPeptSwissProt
AF078845 AAD44477 Q9Y6H1
BC003079 AAH03079 Q9Y6H1
BC015639 AAH15639 Q9Y6H1
BC066331 AAH66331 Q9Y6H1
BC071985 AAH71985 Q9Y6H1
BC100275 AAI00276 Q9Y6H1
AY605046 AAT35813 Q9Y6H1
AY633613 AAV33306 Q9Y6H1
EU832729 ACE87061  
EU832651 ACE87742  

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene		 Gene Info Protein
H.sapiens CHCHD2 NP_057223 R.norvegicus Chchd2 316643   NP_001015019 89
M.musculus Chchd2 14004 Gene Info NP_077128 87
M.musculus OTTMUSG00000006350 665367   XP_981505 85
M.musculus OTTMUSG00000010939 433806 Gene Info XP_485502 85
A.gambiae AgaP_AGAP000897 1277414   XP_316875 57
D.melanogaster CG5010 32701   NP_573196 56
C.elegans C16C10.11 175529   NP_497826 54
M.grisea MGG_02735 2682717   XP_366659 51
S.cerevisiae MIC17 855014   NP_013715 44
N.crassa NCU02154.1 2711010   XP_329344 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.